Wall clock time and date at job start Tue Mar 31 2020 16:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00041 * 2 1 4 4 H 1.48498 * 109.47371 * 240.00453 * 3 2 1 5 5 H 1.48503 * 109.46722 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47203 * 119.99820 * 3 2 1 7 7 C 1.38810 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00246 * 197.35376 * 7 2 1 9 9 N 1.36945 * 119.99610 * 17.35758 * 7 2 1 10 10 C 1.46919 * 120.63468 * 27.68228 * 9 7 2 11 11 C 1.53185 * 108.77820 * 126.39383 * 10 9 7 12 12 C 1.53034 * 109.31303 * 54.63285 * 11 10 9 13 13 H 1.09004 * 109.46334 * 178.61262 * 12 11 10 14 14 N 1.46500 * 109.46025 * 58.65863 * 12 11 10 15 15 C 1.34777 * 120.00242 * 84.92772 * 14 12 11 16 16 O 1.21638 * 119.99934 * 0.02562 * 15 14 12 17 17 C 1.47152 * 120.00350 * 180.02562 * 15 14 12 18 18 N 1.30567 * 125.52829 * 179.97438 * 17 15 14 19 19 C 1.30656 * 115.93082 * 180.02562 * 18 17 15 20 20 C 1.34443 * 115.73960 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 125.45986 * 179.97438 * 20 19 18 22 22 S 1.71071 * 109.07363 * 359.72867 * 20 19 18 23 23 C 1.53035 * 109.54135 * 298.63673 * 12 11 10 24 24 H 1.09003 * 109.52640 * 301.39757 * 23 12 11 25 25 O 1.42905 * 109.50019 * 181.31216 * 23 12 11 26 26 C 1.46922 * 120.62614 * 207.68721 * 9 7 2 27 27 H 0.97000 * 120.00650 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.58423 * 6.60284 * 10 9 7 29 29 H 1.09000 * 109.70410 * 246.25734 * 10 9 7 30 30 H 1.09006 * 109.49574 * 294.68406 * 11 10 9 31 31 H 1.09000 * 109.50117 * 174.58685 * 11 10 9 32 32 H 0.97000 * 120.00450 * 264.93039 * 14 12 11 33 33 H 1.07999 * 122.13105 * 180.02562 * 19 18 17 34 34 H 0.96702 * 113.99941 * 180.16283 * 25 23 12 35 35 H 1.09001 * 109.59334 * 113.82024 * 26 9 7 36 36 H 1.09001 * 109.58920 * 353.39074 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2234 0.2784 9 7 1.3723 -2.3609 -0.3549 10 6 0.2279 -2.3340 -1.2758 11 6 0.5010 -3.3033 -2.4301 12 6 0.8191 -4.6887 -1.8632 13 1 0.9897 -5.3863 -2.6833 14 7 -0.3086 -5.1551 -1.0528 15 6 -1.3504 -5.7757 -1.6412 16 8 -1.3540 -5.9489 -2.8452 17 6 -2.4834 -6.2437 -0.8272 18 7 -3.5438 -6.8544 -1.2827 19 6 -4.4383 -7.1879 -0.3908 20 6 -4.1479 -6.8570 0.8795 21 17 -5.1527 -7.1771 2.2586 22 16 -2.6264 -6.0761 0.9199 23 6 2.0747 -4.6093 -0.9919 24 1 2.9089 -4.2391 -1.5879 25 8 2.3885 -5.9091 -0.4878 26 6 1.8194 -3.6547 0.1788 27 1 -0.4851 0.8400 0.0004 28 1 0.0985 -1.3254 -1.6684 29 1 -0.6756 -2.6394 -0.7482 30 1 1.3496 -2.9451 -3.0130 31 1 -0.3797 -3.3652 -3.0694 32 1 -0.3057 -5.0174 -0.0926 33 1 -5.3528 -7.6970 -0.6569 34 1 3.1736 -5.9332 0.0762 35 1 1.0471 -4.0694 0.8266 36 1 2.7401 -3.5176 0.7460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090428553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:15 Heat of formation + Delta-G solvation = -34.754272 kcal Electronic energy + Delta-G solvation = -24090.215337 eV Core-core repulsion = 20341.364429 eV Total energy + Delta-G solvation = -3748.850908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.63097 -40.72238 -39.24308 -38.05225 -36.92284 -35.73277 -33.65973 -32.23462 -31.26020 -30.19018 -27.79680 -26.93346 -24.25896 -23.71398 -23.30457 -21.22498 -20.59456 -20.14917 -18.86956 -18.30587 -17.94065 -17.29560 -16.83605 -16.78215 -16.44101 -15.88798 -15.72840 -15.50345 -15.28330 -15.15038 -14.86988 -14.40107 -13.87412 -13.61701 -13.44215 -13.29861 -13.21826 -13.00464 -12.69102 -12.38726 -12.21636 -12.13080 -12.00483 -11.83118 -11.76952 -11.26223 -11.01653 -10.91548 -10.70005 -10.48614 -10.34787 -10.03907 -8.69502 -7.86944 -5.32533 -1.18384 -0.51226 0.16739 0.81163 1.04838 1.50451 1.53655 1.58926 1.66156 1.95486 2.51865 3.10359 3.28021 3.30003 3.58260 3.65668 3.85619 3.90568 4.05009 4.24731 4.38299 4.52685 4.64525 4.69442 4.84836 4.93587 5.02968 5.13696 5.30685 5.43793 5.65359 5.72040 6.05217 6.35895 6.37751 6.85494 6.92923 7.14445 7.83335 8.33892 9.19161 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014207 B = 0.003618 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.399896 B = 7737.271888 C = 8631.029157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.043 4.043 3 Si 0.962 3.038 4 H -0.280 1.280 5 H -0.300 1.300 6 H -0.274 1.274 7 C -0.264 4.264 8 H 0.074 0.926 9 N -0.600 5.600 10 C 0.181 3.819 11 C -0.143 4.143 12 C 0.168 3.832 13 H 0.086 0.914 14 N -0.687 5.687 15 C 0.594 3.406 16 O -0.542 6.542 17 C -0.028 4.028 18 N -0.416 5.416 19 C 0.042 3.958 20 C -0.202 4.202 21 Cl 0.035 6.965 22 S 0.287 5.713 23 C 0.095 3.905 24 H 0.079 0.921 25 O -0.571 6.571 26 C 0.115 3.885 27 H 0.249 0.751 28 H 0.056 0.944 29 H 0.003 0.997 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.405 0.595 33 H 0.215 0.785 34 H 0.397 0.603 35 H 0.025 0.975 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 -14.488 4.887 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.240 4.240 3 Si 0.791 3.209 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.200 1.200 7 C -0.394 4.394 8 H 0.092 0.908 9 N -0.325 5.325 10 C 0.055 3.945 11 C -0.183 4.183 12 C 0.064 3.936 13 H 0.104 0.896 14 N -0.339 5.339 15 C 0.376 3.624 16 O -0.419 6.419 17 C -0.301 4.301 18 N -0.133 5.133 19 C -0.118 4.118 20 C -0.352 4.352 21 Cl 0.064 6.936 22 S 0.540 5.460 23 C 0.034 3.966 24 H 0.097 0.903 25 O -0.378 6.378 26 C -0.011 4.011 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.022 0.978 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.242 0.758 33 H 0.231 0.769 34 H 0.248 0.752 35 H 0.043 0.957 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.970 -14.317 4.043 15.398 hybrid contribution -0.483 0.901 0.605 1.188 sum -4.453 -13.417 4.648 14.881 Atomic orbital electron populations 1.70153 1.06628 1.25923 1.54938 1.25709 0.95867 1.01305 1.01071 0.85427 0.77596 0.79575 0.78330 1.20567 1.22605 1.20001 1.19475 0.93174 0.85671 1.41051 0.90818 1.44155 1.35689 1.01896 1.50752 1.20515 0.88078 0.97375 0.88495 1.22431 1.01929 0.94739 0.99189 1.20919 0.83878 0.95433 0.93410 0.89609 1.45702 1.18982 1.57438 1.11792 1.16829 0.81139 0.78068 0.86384 1.90805 1.79083 1.57468 1.14584 1.27268 0.99666 1.07863 0.95332 1.66779 1.00511 1.09732 1.36306 1.22307 1.01321 1.02600 0.85556 1.26781 1.01587 1.11022 0.95805 1.98409 1.64995 1.93624 1.36620 1.84098 1.09758 1.47968 1.04154 1.22364 0.95403 0.83422 0.95408 0.90336 1.86454 1.52327 1.28329 1.70706 1.21725 0.99050 0.86157 0.94176 0.94162 0.92571 0.97845 0.90359 0.92157 0.75776 0.76864 0.75220 0.95732 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.08 11.19 21.65 0.24 -51.84 16 2 C -0.04 -2.27 4.91 84.86 0.42 -1.85 16 3 Si 0.96 42.37 29.59 68.60 2.03 44.40 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.26 -13.16 9.58 84.03 0.81 -12.35 16 8 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 9 N -0.60 -26.71 2.99 -699.11 -2.09 -28.80 16 10 C 0.18 8.15 5.05 86.36 0.44 8.59 16 11 C -0.14 -5.32 5.77 30.67 0.18 -5.14 16 12 C 0.17 5.54 2.47 45.01 0.11 5.65 16 13 H 0.09 2.90 7.58 -2.38 -0.02 2.88 16 14 N -0.69 -22.13 4.15 -445.94 -1.85 -23.98 16 15 C 0.59 20.69 7.77 86.58 0.67 21.36 16 16 O -0.54 -22.40 16.73 -4.15 -0.07 -22.47 16 17 C -0.03 -0.83 7.45 87.22 0.65 -0.18 16 18 N -0.42 -12.40 10.59 -190.28 -2.02 -14.42 16 19 C 0.04 0.92 11.21 84.00 0.94 1.86 16 20 C -0.20 -4.09 6.95 66.95 0.47 -3.62 16 21 Cl 0.04 0.57 29.30 -2.72 -0.08 0.49 16 22 S 0.29 6.44 22.30 -56.49 -1.26 5.18 16 23 C 0.10 2.77 3.36 30.67 0.10 2.88 16 24 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 25 O -0.57 -13.88 13.21 -148.98 -1.97 -15.85 16 26 C 0.12 3.94 5.84 86.37 0.50 4.44 16 27 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 28 H 0.06 2.94 6.04 -2.39 -0.01 2.92 16 29 H 0.00 0.17 7.74 -2.39 -0.02 0.15 16 30 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.41 12.15 6.01 -92.71 -0.56 11.59 16 33 H 0.21 3.28 8.06 -2.91 -0.02 3.25 16 34 H 0.40 6.01 9.08 -74.06 -0.67 5.34 16 35 H 0.02 0.84 6.64 -2.39 -0.02 0.82 16 36 H 0.07 2.36 7.93 -2.39 -0.02 2.35 16 Total: -1.00 -65.83 331.43 -1.85 -67.68 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -0.07 Total: 17.97 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 5.28 Total: 21.63 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -5.72 Total: -119.03 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -2.04 Total: -38.32 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 6.44 SS G_CDS: -1.26 Total: 5.18 kcal Atomic # 17 Polarization: 0.57 SS G_CDS: -0.08 Total: 0.49 kcal Total: -65.83 -1.85 -67.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090428553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.924 kcal (2) G-P(sol) polarization free energy of solvation -65.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds