Wall clock time and date at job start Tue Mar 31 2020 16:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99868 * 2 1 4 4 H 1.48506 * 109.47143 * 269.99851 * 3 2 1 5 5 H 1.48494 * 109.47167 * 30.00196 * 3 2 1 6 6 H 1.48508 * 109.46904 * 150.00685 * 3 2 1 7 7 C 1.38813 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00380 * 197.36013 * 7 2 1 9 9 N 1.36940 * 119.99708 * 17.36148 * 7 2 1 10 10 C 1.46927 * 120.62999 * 207.66687 * 9 7 2 11 11 C 1.53191 * 108.77571 * 233.63022 * 10 9 7 12 12 C 1.53039 * 109.30976 * 305.36389 * 11 10 9 13 13 H 1.09005 * 109.46035 * 181.38709 * 12 11 10 14 14 N 1.46500 * 109.44728 * 301.34953 * 12 11 10 15 15 C 1.34776 * 120.00257 * 275.03153 * 14 12 11 16 16 O 1.21636 * 119.99851 * 0.02562 * 15 14 12 17 17 C 1.47148 * 120.00105 * 180.02562 * 15 14 12 18 18 N 1.30570 * 125.52395 * 180.02562 * 17 15 14 19 19 C 1.30669 * 115.92777 * 180.02562 * 18 17 15 20 20 C 1.34444 * 115.73856 * 359.97438 * 19 18 17 21 21 Cl 1.73600 * 125.45860 * 179.97438 * 20 19 18 22 22 S 1.71070 * 109.07036 * 359.72870 * 20 19 18 23 23 C 1.53039 * 109.54244 * 61.36830 * 12 11 10 24 24 H 1.08999 * 109.49835 * 58.61160 * 23 12 11 25 25 O 1.42893 * 109.49951 * 178.68589 * 23 12 11 26 26 C 1.46920 * 120.63164 * 27.68562 * 9 7 2 27 27 H 0.97001 * 119.99901 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.58338 * 353.41447 * 10 9 7 29 29 H 1.08996 * 109.58839 * 113.69972 * 10 9 7 30 30 H 1.08999 * 109.49704 * 185.40972 * 11 10 9 31 31 H 1.09001 * 109.49836 * 65.31435 * 11 10 9 32 32 H 0.97002 * 119.99496 * 95.04137 * 14 12 11 33 33 H 1.07991 * 122.12927 * 179.97438 * 19 18 17 34 34 H 0.96704 * 114.00273 * 180.02562 * 25 23 12 35 35 H 1.09004 * 109.58990 * 6.58452 * 26 9 7 36 36 H 1.09000 * 109.70760 * 246.22690 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2236 0.2785 9 7 1.3724 -2.3609 -0.3549 10 6 1.8195 -3.6549 0.1784 11 6 2.0752 -4.6090 -0.9926 12 6 0.8197 -4.6883 -1.8641 13 1 0.9905 -5.3856 -2.6843 14 7 -0.3079 -5.1551 -1.0536 15 6 -0.5064 -6.4757 -0.8720 16 8 0.2511 -7.2801 -1.3807 17 6 -1.6393 -6.9445 -0.0584 18 7 -1.9314 -8.1931 0.1875 19 6 -2.9836 -8.3971 0.9350 20 6 -3.6263 -7.2925 1.3526 21 17 -5.0462 -7.2703 2.3511 22 16 -2.8163 -5.9124 0.7478 23 6 0.5014 -3.3028 -2.4307 24 1 1.3499 -2.9445 -3.0137 25 8 -0.6531 -3.3839 -3.2688 26 6 0.2280 -2.3338 -1.2760 27 1 -0.4850 0.8401 0.0004 28 1 2.7402 -3.5177 0.7457 29 1 1.0482 -4.0686 0.8279 30 1 2.3147 -5.6005 -0.6083 31 1 2.9090 -4.2381 -1.5887 32 1 -0.9118 -4.5135 -0.6478 33 1 -3.3158 -9.3898 1.2004 34 1 -0.9128 -2.5401 -3.6634 35 1 0.0984 -1.3252 -1.6684 36 1 -0.6756 -2.6396 -0.7487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090428554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:30 Heat of formation + Delta-G solvation = -12.924047 kcal Electronic energy + Delta-G solvation = -24105.778074 eV Core-core repulsion = 20357.873795 eV Total energy + Delta-G solvation = -3747.904279 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.42591 -39.52637 -37.83823 -37.18314 -35.38040 -34.27058 -32.21998 -30.68896 -29.65414 -28.98935 -26.55871 -25.32245 -22.93342 -22.23807 -21.75139 -20.08817 -19.36385 -18.79920 -17.37578 -16.94067 -16.62922 -16.11880 -15.64069 -15.22449 -15.05726 -14.50615 -14.26922 -14.15184 -13.97037 -13.78266 -13.45837 -12.85140 -12.56568 -12.45420 -12.30137 -11.96913 -11.77627 -11.25801 -11.18107 -11.10824 -10.90147 -10.56415 -10.50278 -10.28141 -10.07703 -9.81279 -9.74697 -9.68686 -9.43632 -9.21251 -8.87876 -8.63236 -6.87372 -5.96145 -3.39617 -0.15386 0.46320 1.15554 1.72508 2.08759 2.87278 3.15030 3.28177 3.36601 3.37100 4.27039 4.35390 4.50057 4.64146 4.84072 5.17356 5.30095 5.32807 5.55043 5.59115 5.71851 5.83247 5.92382 6.09719 6.27631 6.34517 6.59700 6.65237 6.77322 6.94931 7.13129 7.30943 7.55726 7.65374 8.00440 8.14682 8.26789 9.02125 9.64659 10.19746 11.12124 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.003589 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.955376 B = 7799.510385 C = 8804.269260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.587 5.587 10 C 0.143 3.857 11 C -0.147 4.147 12 C 0.167 3.833 13 H 0.086 0.914 14 N -0.692 5.692 15 C 0.593 3.407 16 O -0.505 6.505 17 C 0.008 3.992 18 N -0.394 5.394 19 C 0.046 3.954 20 C -0.211 4.211 21 Cl 0.012 6.988 22 S 0.249 5.751 23 C 0.066 3.934 24 H 0.067 0.933 25 O -0.573 6.573 26 C 0.144 3.856 27 H 0.256 0.744 28 H 0.060 0.940 29 H 0.019 0.981 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.403 0.597 33 H 0.187 0.813 34 H 0.378 0.622 35 H 0.095 0.905 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.741 -10.542 0.601 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.311 5.311 10 C 0.017 3.983 11 C -0.187 4.187 12 C 0.063 3.937 13 H 0.104 0.896 14 N -0.345 5.345 15 C 0.373 3.627 16 O -0.380 6.380 17 C -0.268 4.268 18 N -0.110 5.110 19 C -0.114 4.114 20 C -0.361 4.361 21 Cl 0.041 6.959 22 S 0.503 5.497 23 C 0.005 3.995 24 H 0.085 0.915 25 O -0.378 6.378 26 C 0.017 3.983 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.240 0.760 33 H 0.204 0.796 34 H 0.225 0.775 35 H 0.113 0.887 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.156 -10.883 0.339 13.029 hybrid contribution -0.570 0.856 0.552 1.167 sum -7.726 -10.028 0.891 12.690 Atomic orbital electron populations 1.70007 1.05256 1.25789 1.53603 1.25041 0.95319 0.98520 1.00518 0.86266 0.79203 0.83406 0.77761 1.21368 1.21704 1.20339 1.19225 0.92947 0.84597 1.41792 0.91272 1.43968 1.35622 1.01764 1.49778 1.20944 0.98114 0.86380 0.92850 1.22442 0.96343 1.00609 0.99298 1.20971 0.85145 0.94950 0.92640 0.89604 1.45835 1.31191 1.05268 1.52230 1.16568 0.82547 0.83256 0.80322 1.90839 1.44952 1.54122 1.48043 1.27727 1.01951 0.91712 1.05408 1.66808 1.13846 1.18370 1.11928 1.21937 0.91808 1.00075 0.97601 1.26653 1.00711 1.00146 1.08552 1.98393 1.33592 1.98351 1.65609 1.84445 1.18587 1.06216 1.40417 1.22955 0.88085 0.95372 0.93090 0.91491 1.86407 1.48128 1.36845 1.66403 1.21421 0.89459 0.98849 0.88567 0.93451 0.92171 0.96291 0.91404 0.90582 0.75991 0.79611 0.77503 0.88655 0.95897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.87 11.19 55.49 0.62 -23.25 16 2 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 3 Si 0.90 20.27 29.59 -169.99 -5.03 15.24 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.26 -6.44 9.59 -15.06 -0.14 -6.59 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -13.14 2.99 -172.32 -0.52 -13.66 16 10 C 0.14 2.76 6.25 -3.71 -0.02 2.74 16 11 C -0.15 -2.46 5.77 -26.61 -0.15 -2.61 16 12 C 0.17 2.81 2.47 -67.89 -0.17 2.64 16 13 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 14 N -0.69 -11.25 4.15 -54.93 -0.23 -11.48 16 15 C 0.59 10.01 7.77 -12.64 -0.10 9.91 16 16 O -0.50 -9.93 16.73 5.25 0.09 -9.84 16 17 C 0.01 0.12 7.45 -14.47 -0.11 0.01 16 18 N -0.39 -5.82 10.59 -11.50 -0.12 -5.94 16 19 C 0.05 0.53 11.21 -19.39 -0.22 0.31 16 20 C -0.21 -2.32 6.95 29.39 0.20 -2.12 16 21 Cl 0.01 0.11 29.30 -51.86 -1.52 -1.40 16 22 S 0.25 2.99 22.30 -107.50 -2.40 0.59 16 23 C 0.07 1.13 3.36 -26.61 -0.09 1.04 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 25 O -0.57 -9.02 13.21 -35.23 -0.47 -9.48 16 26 C 0.14 2.97 4.64 -3.71 -0.02 2.95 16 27 H 0.26 6.59 8.31 -40.82 -0.34 6.26 16 28 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 29 H 0.02 0.37 7.74 -51.93 -0.40 -0.03 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.40 6.42 6.01 -40.82 -0.25 6.18 16 33 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.38 4.67 9.09 45.56 0.41 5.08 16 35 H 0.10 2.21 6.04 -51.93 -0.31 1.90 16 36 H 0.02 0.49 6.64 -51.93 -0.35 0.15 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -29.48 331.44 -8.41 -37.89 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -2.94 Total: 8.03 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -0.90 Total: 8.32 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.25 Total: -54.33 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.38 Total: -19.33 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -2.40 Total: 0.59 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -1.52 Total: -1.40 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.48 -8.41 -37.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090428554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.963 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds