Wall clock time and date at job start Tue Mar 31 2020 16:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99868 * 2 1 4 4 H 1.48506 * 109.47143 * 269.99851 * 3 2 1 5 5 H 1.48494 * 109.47167 * 30.00196 * 3 2 1 6 6 H 1.48508 * 109.46904 * 150.00685 * 3 2 1 7 7 C 1.38813 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00380 * 197.36013 * 7 2 1 9 9 N 1.36940 * 119.99708 * 17.36148 * 7 2 1 10 10 C 1.46927 * 120.62999 * 207.66687 * 9 7 2 11 11 C 1.53191 * 108.77571 * 233.63022 * 10 9 7 12 12 C 1.53039 * 109.30976 * 305.36389 * 11 10 9 13 13 H 1.09005 * 109.46035 * 181.38709 * 12 11 10 14 14 N 1.46500 * 109.44728 * 301.34953 * 12 11 10 15 15 C 1.34776 * 120.00257 * 275.03153 * 14 12 11 16 16 O 1.21636 * 119.99851 * 0.02562 * 15 14 12 17 17 C 1.47148 * 120.00105 * 180.02562 * 15 14 12 18 18 N 1.30570 * 125.52395 * 180.02562 * 17 15 14 19 19 C 1.30669 * 115.92777 * 180.02562 * 18 17 15 20 20 C 1.34444 * 115.73856 * 359.97438 * 19 18 17 21 21 Cl 1.73600 * 125.45860 * 179.97438 * 20 19 18 22 22 S 1.71070 * 109.07036 * 359.72870 * 20 19 18 23 23 C 1.53039 * 109.54244 * 61.36830 * 12 11 10 24 24 H 1.08999 * 109.49835 * 58.61160 * 23 12 11 25 25 O 1.42893 * 109.49951 * 178.68589 * 23 12 11 26 26 C 1.46920 * 120.63164 * 27.68562 * 9 7 2 27 27 H 0.97001 * 119.99901 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.58338 * 353.41447 * 10 9 7 29 29 H 1.08996 * 109.58839 * 113.69972 * 10 9 7 30 30 H 1.08999 * 109.49704 * 185.40972 * 11 10 9 31 31 H 1.09001 * 109.49836 * 65.31435 * 11 10 9 32 32 H 0.97002 * 119.99496 * 95.04137 * 14 12 11 33 33 H 1.07991 * 122.12927 * 179.97438 * 19 18 17 34 34 H 0.96704 * 114.00273 * 180.02562 * 25 23 12 35 35 H 1.09004 * 109.58990 * 6.58452 * 26 9 7 36 36 H 1.09000 * 109.70760 * 246.22690 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2236 0.2785 9 7 1.3724 -2.3609 -0.3549 10 6 1.8195 -3.6549 0.1784 11 6 2.0752 -4.6090 -0.9926 12 6 0.8197 -4.6883 -1.8641 13 1 0.9905 -5.3856 -2.6843 14 7 -0.3079 -5.1551 -1.0536 15 6 -0.5064 -6.4757 -0.8720 16 8 0.2511 -7.2801 -1.3807 17 6 -1.6393 -6.9445 -0.0584 18 7 -1.9314 -8.1931 0.1875 19 6 -2.9836 -8.3971 0.9350 20 6 -3.6263 -7.2925 1.3526 21 17 -5.0462 -7.2703 2.3511 22 16 -2.8163 -5.9124 0.7478 23 6 0.5014 -3.3028 -2.4307 24 1 1.3499 -2.9445 -3.0137 25 8 -0.6531 -3.3839 -3.2688 26 6 0.2280 -2.3338 -1.2760 27 1 -0.4850 0.8401 0.0004 28 1 2.7402 -3.5177 0.7457 29 1 1.0482 -4.0686 0.8279 30 1 2.3147 -5.6005 -0.6083 31 1 2.9090 -4.2381 -1.5887 32 1 -0.9118 -4.5135 -0.6478 33 1 -3.3158 -9.3898 1.2004 34 1 -0.9128 -2.5401 -3.6634 35 1 0.0984 -1.3252 -1.6684 36 1 -0.6756 -2.6396 -0.7487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090428554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:28 Heat of formation + Delta-G solvation = -34.674103 kcal Electronic energy + Delta-G solvation = -24106.721227 eV Core-core repulsion = 20357.873795 eV Total energy + Delta-G solvation = -3748.847432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 3.94 seconds Orbital eigenvalues (eV) -41.62710 -40.71510 -39.23465 -38.04931 -36.84103 -35.78797 -33.84854 -31.97996 -31.05042 -30.46496 -27.80239 -26.93023 -24.30861 -23.64660 -23.27332 -21.20921 -20.58325 -20.12920 -18.85619 -18.28245 -18.05858 -17.29761 -16.83872 -16.76008 -16.42025 -15.83575 -15.68614 -15.43387 -15.29242 -15.15745 -14.92987 -14.39699 -13.87855 -13.59771 -13.43720 -13.31268 -13.22225 -12.86286 -12.69883 -12.65374 -12.16271 -12.11543 -11.98747 -11.82855 -11.74994 -11.24350 -10.96884 -10.88225 -10.70611 -10.56885 -10.33665 -10.03894 -8.69331 -7.87564 -5.32594 -1.18278 -0.50693 0.17914 0.81535 1.04803 1.50243 1.53623 1.60309 1.66326 1.95020 2.52227 3.09404 3.26629 3.30167 3.58457 3.65886 3.86360 3.93015 4.12839 4.26992 4.37516 4.46484 4.67562 4.69969 4.83875 4.95658 5.08265 5.16894 5.27611 5.39437 5.60942 5.69165 6.05289 6.35303 6.37596 6.83237 6.87735 7.15144 7.82329 8.33587 9.18111 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.003589 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.955376 B = 7799.510385 C = 8804.269260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.039 4.039 3 Si 0.961 3.039 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.273 1.273 7 C -0.264 4.264 8 H 0.068 0.932 9 N -0.601 5.601 10 C 0.144 3.856 11 C -0.134 4.134 12 C 0.167 3.833 13 H 0.086 0.914 14 N -0.689 5.689 15 C 0.595 3.405 16 O -0.540 6.540 17 C -0.026 4.026 18 N -0.414 5.414 19 C 0.042 3.958 20 C -0.201 4.201 21 Cl 0.034 6.966 22 S 0.280 5.720 23 C 0.083 3.917 24 H 0.071 0.929 25 O -0.574 6.574 26 C 0.154 3.846 27 H 0.252 0.748 28 H 0.059 0.941 29 H 0.017 0.983 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.405 0.595 33 H 0.216 0.784 34 H 0.393 0.607 35 H 0.069 0.931 36 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.331 -11.028 0.875 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.235 4.235 3 Si 0.790 3.210 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.198 1.198 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.326 5.326 10 C 0.018 3.982 11 C -0.174 4.174 12 C 0.063 3.937 13 H 0.104 0.896 14 N -0.341 5.341 15 C 0.378 3.622 16 O -0.417 6.417 17 C -0.300 4.300 18 N -0.131 5.131 19 C -0.117 4.117 20 C -0.351 4.351 21 Cl 0.063 6.937 22 S 0.533 5.467 23 C 0.022 3.978 24 H 0.089 0.911 25 O -0.381 6.381 26 C 0.027 3.973 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.242 0.758 33 H 0.232 0.768 34 H 0.243 0.757 35 H 0.087 0.913 36 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -7.745 -11.365 0.605 13.767 hybrid contribution -0.518 0.980 0.557 1.241 sum -8.264 -10.385 1.161 13.322 Atomic orbital electron populations 1.70124 1.06268 1.25951 1.54916 1.25639 0.95972 1.00951 1.00977 0.85372 0.78116 0.80030 0.77508 1.21189 1.22437 1.19823 1.19480 0.93105 0.85757 1.41085 0.91472 1.44158 1.35817 1.02104 1.50499 1.21005 0.97843 0.85576 0.93767 1.22300 0.96631 1.00151 0.98335 1.20936 0.85392 0.94563 0.92776 0.89585 1.45777 1.30999 1.05308 1.52020 1.16783 0.82696 0.82880 0.79889 1.90805 1.46472 1.54794 1.49640 1.27274 1.02869 0.92584 1.07235 1.66797 1.15036 1.18715 1.12539 1.22315 0.90973 1.01448 0.96958 1.26787 1.00887 0.99657 1.07807 1.98411 1.32258 1.98256 1.64820 1.84340 1.17326 1.05695 1.39301 1.22616 0.88623 0.94555 0.91967 0.91143 1.86390 1.47520 1.38177 1.65974 1.21254 0.88621 0.98216 0.89188 0.93929 0.92236 0.96507 0.90723 0.89775 0.75827 0.76801 0.75698 0.91294 0.97008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.42 11.19 21.65 0.24 -49.18 16 2 C -0.04 -1.99 4.91 84.86 0.42 -1.57 16 3 Si 0.96 41.63 29.59 68.60 2.03 43.66 16 4 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.30 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.26 -13.24 9.59 84.03 0.81 -12.43 16 8 H 0.07 3.33 7.89 -2.91 -0.02 3.30 16 9 N -0.60 -26.81 2.99 -699.09 -2.09 -28.90 16 10 C 0.14 5.46 6.25 86.36 0.54 6.00 16 11 C -0.13 -4.37 5.77 30.67 0.18 -4.19 16 12 C 0.17 5.51 2.47 45.02 0.11 5.62 16 13 H 0.09 2.89 7.58 -2.38 -0.02 2.88 16 14 N -0.69 -22.11 4.15 -445.93 -1.85 -23.96 16 15 C 0.60 20.01 7.77 86.58 0.67 20.68 16 16 O -0.54 -21.29 16.73 -4.15 -0.07 -21.36 16 17 C -0.03 -0.75 7.45 87.22 0.65 -0.10 16 18 N -0.41 -11.85 10.59 -190.29 -2.02 -13.87 16 19 C 0.04 0.90 11.21 84.00 0.94 1.84 16 20 C -0.20 -4.01 6.95 66.95 0.47 -3.55 16 21 Cl 0.03 0.55 29.30 -2.72 -0.08 0.47 16 22 S 0.28 6.35 22.30 -56.49 -1.26 5.09 16 23 C 0.08 2.80 3.36 30.67 0.10 2.90 16 24 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 25 O -0.57 -17.37 13.21 -148.98 -1.97 -19.34 16 26 C 0.15 6.34 4.64 86.37 0.40 6.74 16 27 H 0.25 13.11 8.31 -92.71 -0.77 12.34 16 28 H 0.06 2.24 7.93 -2.38 -0.02 2.22 16 29 H 0.02 0.65 7.74 -2.39 -0.02 0.63 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.40 12.76 6.01 -92.71 -0.56 12.20 16 33 H 0.22 3.10 8.06 -2.92 -0.02 3.08 16 34 H 0.39 9.23 9.09 -74.05 -0.67 8.55 16 35 H 0.07 3.23 6.04 -2.38 -0.01 3.21 16 36 H 0.01 0.52 6.64 -2.39 -0.02 0.50 16 Total: -1.00 -62.14 331.44 -1.85 -63.99 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -0.07 Total: 21.48 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: 5.28 Total: 21.93 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -5.72 Total: -115.91 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -2.04 Total: -40.70 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 6.35 SS G_CDS: -1.26 Total: 5.09 kcal Atomic # 17 Polarization: 0.55 SS G_CDS: -0.08 Total: 0.47 kcal Total: -62.14 -1.85 -63.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090428554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.315 kcal (2) G-P(sol) polarization free energy of solvation -62.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.94 seconds