Wall clock time and date at job start Tue Mar 31 2020 16:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99868 * 2 1 4 4 H 1.48505 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47395 * 299.99874 * 3 2 1 6 6 H 1.48493 * 109.47139 * 60.00540 * 3 2 1 7 7 C 1.38813 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00342 * 197.37065 * 7 2 1 9 9 N 1.36940 * 119.99797 * 17.36978 * 7 2 1 10 10 C 1.46922 * 120.63115 * 207.66273 * 9 7 2 11 11 C 1.53195 * 108.77658 * 233.63222 * 10 9 7 12 12 C 1.53043 * 109.31066 * 305.36274 * 11 10 9 13 13 H 1.08997 * 109.46326 * 181.38655 * 12 11 10 14 14 N 1.46502 * 109.44963 * 301.35179 * 12 11 10 15 15 C 1.34778 * 120.00015 * 275.03571 * 14 12 11 16 16 O 1.21621 * 119.99752 * 359.97438 * 15 14 12 17 17 C 1.47227 * 120.00034 * 180.02562 * 15 14 12 18 18 N 1.30605 * 125.53030 * 359.68980 * 17 15 14 19 19 C 1.30740 * 115.89293 * 179.78366 * 18 17 15 20 20 Cl 1.73599 * 122.12096 * 180.24367 * 19 18 17 21 21 C 1.34335 * 115.75682 * 0.51508 * 19 18 17 22 22 S 1.71063 * 109.09491 * 359.72784 * 21 19 18 23 23 C 1.53042 * 109.53653 * 61.36313 * 12 11 10 24 24 H 1.08998 * 109.49736 * 58.62022 * 23 12 11 25 25 O 1.42904 * 109.49654 * 178.68458 * 23 12 11 26 26 C 1.46932 * 120.63018 * 27.68597 * 9 7 2 27 27 H 0.97001 * 119.99901 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.58554 * 353.41526 * 10 9 7 29 29 H 1.08993 * 109.59144 * 113.70201 * 10 9 7 30 30 H 1.08994 * 109.49781 * 185.41594 * 11 10 9 31 31 H 1.09000 * 109.50134 * 65.31133 * 11 10 9 32 32 H 0.97004 * 119.99954 * 95.03404 * 14 12 11 33 33 H 1.08001 * 125.44941 * 179.74735 * 21 19 18 34 34 H 0.96698 * 114.00258 * 180.02562 * 25 23 12 35 35 H 1.09003 * 109.58638 * 6.57688 * 26 9 7 36 36 H 1.09002 * 109.69500 * 246.22725 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0533 -1.2236 0.2787 9 7 1.3724 -2.3609 -0.3551 10 6 1.8196 -3.6548 0.1781 11 6 2.0754 -4.6088 -0.9930 12 6 0.8199 -4.6882 -1.8647 13 1 0.9908 -5.3853 -2.6849 14 7 -0.3078 -5.1550 -1.0544 15 6 -0.5061 -6.4757 -0.8729 16 8 0.2509 -7.2799 -1.3821 17 6 -1.6398 -6.9448 -0.0591 18 7 -2.5128 -6.1795 0.5391 19 6 -3.4485 -6.7977 1.2112 20 17 -4.6944 -5.9391 2.0621 21 6 -3.3813 -8.1394 1.2061 22 16 -2.0342 -8.6287 0.2721 23 6 0.5017 -3.3025 -2.4310 24 1 1.3501 -2.9441 -3.0139 25 8 -0.6528 -3.3835 -3.2693 26 6 0.2281 -2.3337 -1.2764 27 1 -0.4850 0.8401 0.0004 28 1 2.7401 -3.5178 0.7455 29 1 1.0483 -4.0688 0.8274 30 1 2.3147 -5.6004 -0.6088 31 1 2.9092 -4.2379 -1.5890 32 1 -0.9118 -4.5136 -0.6485 33 1 -4.0681 -8.8028 1.7107 34 1 -0.9125 -2.5397 -3.6637 35 1 0.0986 -1.3250 -1.6685 36 1 -0.6754 -2.6396 -0.7490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090519576.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:16 Heat of formation + Delta-G solvation = -15.107251 kcal Electronic energy + Delta-G solvation = -24203.305459 eV Core-core repulsion = 20455.306509 eV Total energy + Delta-G solvation = -3747.998950 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.42594 -39.47784 -37.85306 -36.69434 -35.30750 -34.18739 -32.15144 -30.83548 -29.54786 -28.88471 -26.67575 -25.26068 -22.72320 -22.16259 -21.74085 -20.29220 -18.98582 -18.63469 -17.44441 -16.93847 -16.56823 -15.92032 -15.70255 -15.32239 -14.99187 -14.48220 -14.29979 -13.90692 -13.76553 -13.69460 -13.38916 -12.76693 -12.35237 -12.32159 -11.87773 -11.83601 -11.70073 -11.25780 -11.11372 -11.05746 -10.85764 -10.54234 -10.45029 -10.22373 -10.06317 -10.02359 -9.99813 -9.61666 -9.36031 -9.05809 -8.76993 -8.56208 -6.79074 -5.88672 -3.32254 -0.08175 0.74750 1.01978 1.98035 2.00904 3.13684 3.27459 3.31544 3.40445 3.42261 4.14850 4.40046 4.56530 4.68984 4.79560 5.24092 5.29717 5.37974 5.40463 5.63586 5.78858 5.89820 5.99950 6.18847 6.35000 6.38530 6.66372 6.72144 6.86118 7.00288 7.05335 7.41834 7.67010 7.71587 8.07755 8.22503 8.33897 9.09124 9.72079 10.27664 11.19385 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014296 B = 0.003747 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.057836 B = 7471.174650 C = 8560.504517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.143 3.857 11 C -0.145 4.145 12 C 0.163 3.837 13 H 0.084 0.916 14 N -0.671 5.671 15 C 0.595 3.405 16 O -0.536 6.536 17 C 0.008 3.992 18 N -0.416 5.416 19 C 0.112 3.888 20 Cl -0.005 7.005 21 C -0.279 4.279 22 S 0.284 5.716 23 C 0.067 3.933 24 H 0.065 0.935 25 O -0.573 6.573 26 C 0.144 3.856 27 H 0.255 0.745 28 H 0.058 0.942 29 H 0.021 0.979 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.417 0.583 33 H 0.193 0.807 34 H 0.377 0.623 35 H 0.094 0.906 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.344 -15.593 -0.292 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.311 5.311 10 C 0.017 3.983 11 C -0.185 4.185 12 C 0.059 3.941 13 H 0.102 0.898 14 N -0.322 5.322 15 C 0.376 3.624 16 O -0.414 6.414 17 C -0.268 4.268 18 N -0.135 5.135 19 C -0.052 4.052 20 Cl 0.023 6.977 21 C -0.422 4.422 22 S 0.539 5.461 23 C 0.006 3.994 24 H 0.083 0.917 25 O -0.377 6.377 26 C 0.017 3.983 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.255 0.745 33 H 0.211 0.789 34 H 0.224 0.776 35 H 0.112 0.888 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.453 -16.925 -0.748 17.798 hybrid contribution -0.976 2.469 0.796 2.772 sum -6.429 -14.456 0.048 15.821 Atomic orbital electron populations 1.70035 1.05248 1.25602 1.53573 1.25058 0.95293 0.98512 1.00642 0.86224 0.79426 0.83806 0.77325 1.20184 1.21526 1.21668 1.19239 0.92881 0.84620 1.41768 0.91318 1.43962 1.35640 1.01707 1.49795 1.20938 0.98051 0.86498 0.92837 1.22426 0.96286 1.00496 0.99300 1.21003 0.85445 0.94949 0.92707 0.89777 1.45837 1.30293 1.05782 1.50326 1.16595 0.82123 0.83715 0.80003 1.90836 1.46068 1.54379 1.50115 1.27733 1.00850 0.93498 1.04710 1.66304 1.02159 1.37352 1.07644 1.20424 0.95112 0.88383 1.01322 1.98415 1.47597 1.77822 1.73902 1.26611 1.07183 0.98655 1.09717 1.84047 1.16090 1.07460 1.38500 1.22933 0.87941 0.95437 0.93083 0.91663 1.86409 1.48199 1.36758 1.66378 1.21419 0.89601 0.98705 0.88571 0.93536 0.92330 0.96152 0.91539 0.90700 0.74473 0.78939 0.77573 0.88811 0.95522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.02 11.19 55.49 0.62 -24.40 16 2 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 3 Si 0.90 20.91 29.59 -169.99 -5.03 15.88 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.26 -6.69 9.59 -15.06 -0.14 -6.83 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -13.84 2.99 -172.32 -0.52 -14.35 16 10 C 0.14 2.90 6.25 -3.71 -0.02 2.88 16 11 C -0.14 -2.51 5.77 -26.61 -0.15 -2.67 16 12 C 0.16 2.87 2.47 -67.89 -0.17 2.70 16 13 H 0.08 1.48 7.57 -51.93 -0.39 1.09 16 14 N -0.67 -11.75 4.15 -54.90 -0.23 -11.97 16 15 C 0.59 9.96 7.77 -12.61 -0.10 9.87 16 16 O -0.54 -9.66 16.60 5.26 0.09 -9.57 16 17 C 0.01 0.12 7.46 -14.42 -0.11 0.01 16 18 N -0.42 -6.36 10.25 -8.61 -0.09 -6.45 16 19 C 0.11 1.45 7.22 -19.39 -0.14 1.30 16 20 Cl -0.01 -0.07 29.20 -51.86 -1.51 -1.58 16 21 C -0.28 -2.70 10.93 29.36 0.32 -2.38 16 22 S 0.28 2.93 23.03 -107.50 -2.48 0.46 16 23 C 0.07 1.22 3.36 -26.61 -0.09 1.13 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 25 O -0.57 -9.71 13.21 -35.23 -0.47 -10.18 16 26 C 0.14 3.17 4.64 -3.71 -0.02 3.16 16 27 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 29 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.42 7.76 6.52 -40.82 -0.27 7.50 16 33 H 0.19 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.38 5.13 9.08 45.56 0.41 5.54 16 35 H 0.09 2.31 6.03 -51.93 -0.31 1.99 16 36 H 0.03 0.63 6.64 -51.93 -0.35 0.29 16 LS Contribution 332.11 15.07 5.00 5.00 Total: -1.00 -30.20 332.11 -8.27 -38.46 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -2.96 Total: 9.51 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -0.71 Total: 9.20 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.21 Total: -57.18 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.38 Total: -19.75 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.48 Total: 0.46 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.51 Total: -1.58 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.20 -8.27 -38.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090519576.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.355 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds