Wall clock time and date at job start Tue Mar 31 2020 16:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48500 * 109.47341 * 239.99664 * 3 2 1 5 5 H 1.48496 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46651 * 119.99846 * 3 2 1 7 7 C 1.38816 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99557 * 163.07518 * 7 2 1 9 9 N 1.36935 * 120.00109 * 343.07479 * 7 2 1 10 10 C 1.46917 * 120.63313 * 331.84348 * 9 7 2 11 11 C 1.53188 * 108.77981 * 233.58749 * 10 9 7 12 12 C 1.53038 * 109.31234 * 305.36768 * 11 10 9 13 13 H 1.09003 * 109.45921 * 301.34027 * 12 11 10 14 14 N 1.46501 * 109.46422 * 181.36975 * 12 11 10 15 15 C 1.34775 * 120.00284 * 84.99607 * 14 12 11 16 16 O 1.21629 * 119.99425 * 0.02562 * 15 14 12 17 17 C 1.47225 * 120.00525 * 180.02562 * 15 14 12 18 18 N 1.30595 * 125.53638 * 180.02562 * 17 15 14 19 19 C 1.30741 * 115.90063 * 179.97438 * 18 17 15 20 20 Cl 1.73597 * 122.12277 * 179.97438 * 19 18 17 21 21 C 1.34337 * 115.75288 * 0.02562 * 19 18 17 22 22 S 1.71066 * 109.09675 * 359.76171 * 21 19 18 23 23 C 1.53350 * 109.61172 * 61.36986 * 12 11 10 24 24 H 1.09002 * 109.47268 * 58.54959 * 23 12 11 25 25 O 1.42901 * 109.69120 * 178.74611 * 23 12 11 26 26 C 1.46934 * 120.62776 * 151.82327 * 9 7 2 27 27 H 0.96997 * 119.99488 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58812 * 353.37838 * 10 9 7 29 29 H 1.09004 * 109.58911 * 113.65975 * 10 9 7 30 30 H 1.09007 * 109.49854 * 65.31193 * 11 10 9 31 31 H 1.08995 * 109.50153 * 185.41280 * 11 10 9 32 32 H 0.97005 * 120.00075 * 265.00511 * 14 12 11 33 33 H 1.08003 * 125.45149 * 179.97438 * 21 19 18 34 34 H 0.96693 * 113.99937 * 179.74958 * 25 23 12 35 35 H 1.08993 * 109.58470 * 246.20071 * 26 9 7 36 36 H 1.09001 * 109.58650 * 6.48248 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7463 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3699 -2.3626 0.3442 10 6 0.2260 -2.3410 1.2659 11 6 0.4972 -3.3210 2.4115 12 6 0.8116 -4.7022 1.8323 13 1 -0.0286 -5.0419 1.2267 14 7 1.0395 -5.6499 2.9260 15 6 -0.0051 -6.2735 3.5060 16 8 -1.1370 -6.0497 3.1210 17 6 0.2237 -7.2254 4.6055 18 7 -0.7048 -7.8876 5.2419 19 6 -0.2889 -8.6861 6.1898 20 17 -1.3844 -9.6420 7.1383 21 6 1.0400 -8.7192 6.3840 22 16 1.7946 -7.6609 5.2718 23 6 2.0696 -4.6199 0.9591 24 1 2.9046 -4.2565 1.5581 25 8 2.3815 -5.9146 0.4409 26 6 1.8136 -3.6528 -0.2011 27 1 -0.4849 0.8401 -0.0004 28 1 0.0991 -1.3355 1.6674 29 1 -0.6777 -2.6386 0.7339 30 1 1.3470 -2.9701 2.9971 31 1 -0.3834 -3.3864 3.0506 32 1 1.9422 -5.8286 3.2328 33 1 1.5505 -9.3205 7.1217 34 1 3.1658 -5.9334 -0.1244 35 1 1.0400 -4.0598 -0.8521 36 1 2.7330 -3.5126 -0.7696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090519577.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:19 Heat of formation + Delta-G solvation = -14.382794 kcal Electronic energy + Delta-G solvation = -23553.288043 eV Core-core repulsion = 19805.320508 eV Total energy + Delta-G solvation = -3747.967535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.53876 -39.53275 -37.93878 -36.87431 -35.48156 -34.53291 -32.15152 -31.01403 -30.04122 -28.71025 -26.90067 -25.05981 -22.86823 -22.31256 -21.33186 -20.29426 -19.63519 -19.09447 -17.47510 -17.03963 -16.59620 -16.13535 -15.96342 -15.74423 -14.95477 -14.56468 -14.38438 -13.99124 -13.97777 -13.71558 -13.26965 -12.86361 -12.57930 -12.39026 -12.22418 -11.97209 -11.65359 -11.47580 -11.16725 -10.90456 -10.83998 -10.62404 -10.43017 -10.34679 -10.23662 -10.01749 -9.95123 -9.82320 -9.57001 -9.23219 -8.95092 -8.52077 -6.82269 -5.89039 -3.33977 -0.24792 0.57754 0.77957 1.78237 1.84526 2.78744 3.01932 3.32602 3.39051 3.39731 4.19204 4.31844 4.44126 4.48407 4.64516 5.04175 5.18001 5.27335 5.40404 5.43869 5.67441 5.86769 5.99121 6.10723 6.38998 6.41089 6.58130 6.64382 6.71257 6.88623 7.22248 7.40366 7.56204 7.68671 7.83293 8.04501 8.33373 9.08599 9.70772 10.26383 11.19611 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.002625 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.823575 B =10665.084227 C =11003.252174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.007 3.993 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.262 4.262 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.149 4.149 12 C 0.164 3.836 13 H 0.094 0.906 14 N -0.703 5.703 15 C 0.590 3.410 16 O -0.491 6.491 17 C 0.022 3.978 18 N -0.397 5.397 19 C 0.109 3.891 20 Cl -0.004 7.004 21 C -0.261 4.261 22 S 0.229 5.771 23 C 0.079 3.921 24 H 0.059 0.941 25 O -0.571 6.571 26 C 0.121 3.879 27 H 0.257 0.743 28 H 0.095 0.905 29 H 0.026 0.974 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.395 0.605 33 H 0.195 0.805 34 H 0.376 0.624 35 H 0.031 0.969 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.022 -17.210 12.307 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.045 3.955 11 C -0.189 4.189 12 C 0.062 3.938 13 H 0.113 0.887 14 N -0.354 5.354 15 C 0.370 3.630 16 O -0.364 6.364 17 C -0.256 4.256 18 N -0.114 5.114 19 C -0.056 4.056 20 Cl 0.024 6.976 21 C -0.403 4.403 22 S 0.482 5.518 23 C 0.018 3.982 24 H 0.077 0.923 25 O -0.376 6.376 26 C -0.007 4.007 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.229 0.771 33 H 0.212 0.788 34 H 0.223 0.777 35 H 0.048 0.952 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.903 -16.741 12.026 21.441 hybrid contribution 0.613 0.137 0.647 0.901 sum 6.515 -16.604 12.673 21.880 Atomic orbital electron populations 1.70018 1.05305 1.25974 1.52854 1.25089 0.95305 0.98575 1.00323 0.86339 0.78916 0.83153 0.78150 1.20803 1.21536 1.20927 1.19101 0.92541 0.84538 1.42983 0.91544 1.44036 1.35887 1.01203 1.50017 1.20838 0.88813 0.98266 0.87602 1.22652 1.01332 0.93953 1.00981 1.21252 0.98200 0.88753 0.85641 0.88749 1.45923 1.08177 1.44287 1.36999 1.16586 0.85868 0.79762 0.80746 1.90899 1.21937 1.62175 1.61413 1.27556 0.91000 1.03871 1.03127 1.66074 1.34739 1.05362 1.05259 1.20474 0.88736 0.99406 0.96969 1.98410 1.63609 1.67688 1.67875 1.26468 0.96975 1.08522 1.08380 1.83983 1.10791 1.32791 1.24186 1.22842 0.95723 0.83423 0.96180 0.92327 1.86466 1.51065 1.30378 1.69670 1.21524 0.99005 0.87361 0.92808 0.93295 0.88739 0.95577 0.92030 0.91626 0.77117 0.78784 0.77740 0.95157 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.25 11.20 55.49 0.62 -24.63 16 2 C 0.01 0.18 4.92 -17.43 -0.09 0.09 16 3 Si 0.91 20.77 29.59 -169.99 -5.03 15.74 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.26 -6.77 9.58 -15.06 -0.14 -6.92 16 8 H 0.07 1.66 7.89 -52.48 -0.41 1.24 16 9 N -0.59 -13.77 2.99 -172.32 -0.52 -14.29 16 10 C 0.17 3.93 5.30 -3.72 -0.02 3.91 16 11 C -0.15 -2.76 5.65 -26.61 -0.15 -2.91 16 12 C 0.16 2.78 2.13 -67.73 -0.14 2.63 16 13 H 0.09 1.84 7.57 -51.93 -0.39 1.44 16 14 N -0.70 -9.91 4.92 -54.75 -0.27 -10.18 16 15 C 0.59 9.37 7.77 -12.61 -0.10 9.28 16 16 O -0.49 -9.88 16.73 5.25 0.09 -9.79 16 17 C 0.02 0.29 7.46 -14.43 -0.11 0.19 16 18 N -0.40 -5.77 10.60 -8.61 -0.09 -5.86 16 19 C 0.11 1.24 7.22 -19.39 -0.14 1.10 16 20 Cl 0.00 -0.04 29.20 -51.86 -1.51 -1.55 16 21 C -0.26 -2.13 10.93 29.36 0.32 -1.81 16 22 S 0.23 1.86 22.30 -107.50 -2.40 -0.53 16 23 C 0.08 1.24 3.16 -26.45 -0.08 1.16 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 O -0.57 -7.71 13.18 -35.23 -0.46 -8.18 16 26 C 0.12 2.31 6.13 -3.71 -0.02 2.29 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.39 4.39 7.74 -40.82 -0.32 4.07 16 33 H 0.19 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.38 3.49 9.08 45.56 0.41 3.90 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 335.65 15.07 5.06 5.06 Total: -1.00 -32.27 335.65 -8.30 -40.57 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.11 Total: 4.65 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -0.68 Total: 9.00 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.26 Total: -54.97 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.38 Total: -17.97 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.40 Total: -0.53 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.51 Total: -1.55 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.27 -8.30 -40.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090519577.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.190 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds