Wall clock time and date at job start Tue Mar 31 2020 16:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48500 * 109.47341 * 239.99664 * 3 2 1 5 5 H 1.48496 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46651 * 119.99846 * 3 2 1 7 7 C 1.38816 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99557 * 163.07518 * 7 2 1 9 9 N 1.36935 * 120.00109 * 343.07479 * 7 2 1 10 10 C 1.46917 * 120.63313 * 331.84348 * 9 7 2 11 11 C 1.53188 * 108.77981 * 233.58749 * 10 9 7 12 12 C 1.53038 * 109.31234 * 305.36768 * 11 10 9 13 13 H 1.09003 * 109.45921 * 301.34027 * 12 11 10 14 14 N 1.46501 * 109.46422 * 181.36975 * 12 11 10 15 15 C 1.34775 * 120.00284 * 84.99607 * 14 12 11 16 16 O 1.21629 * 119.99425 * 0.02562 * 15 14 12 17 17 C 1.47225 * 120.00525 * 180.02562 * 15 14 12 18 18 N 1.30595 * 125.53638 * 180.02562 * 17 15 14 19 19 C 1.30741 * 115.90063 * 179.97438 * 18 17 15 20 20 Cl 1.73597 * 122.12277 * 179.97438 * 19 18 17 21 21 C 1.34337 * 115.75288 * 0.02562 * 19 18 17 22 22 S 1.71066 * 109.09675 * 359.76171 * 21 19 18 23 23 C 1.53350 * 109.61172 * 61.36986 * 12 11 10 24 24 H 1.09002 * 109.47268 * 58.54959 * 23 12 11 25 25 O 1.42901 * 109.69120 * 178.74611 * 23 12 11 26 26 C 1.46934 * 120.62776 * 151.82327 * 9 7 2 27 27 H 0.96997 * 119.99488 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58812 * 353.37838 * 10 9 7 29 29 H 1.09004 * 109.58911 * 113.65975 * 10 9 7 30 30 H 1.09007 * 109.49854 * 65.31193 * 11 10 9 31 31 H 1.08995 * 109.50153 * 185.41280 * 11 10 9 32 32 H 0.97005 * 120.00075 * 265.00511 * 14 12 11 33 33 H 1.08003 * 125.45149 * 179.97438 * 21 19 18 34 34 H 0.96693 * 113.99937 * 179.74958 * 25 23 12 35 35 H 1.08993 * 109.58470 * 246.20071 * 26 9 7 36 36 H 1.09001 * 109.58650 * 6.48248 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7463 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3699 -2.3626 0.3442 10 6 0.2260 -2.3410 1.2659 11 6 0.4972 -3.3210 2.4115 12 6 0.8116 -4.7022 1.8323 13 1 -0.0286 -5.0419 1.2267 14 7 1.0395 -5.6499 2.9260 15 6 -0.0051 -6.2735 3.5060 16 8 -1.1370 -6.0497 3.1210 17 6 0.2237 -7.2254 4.6055 18 7 -0.7048 -7.8876 5.2419 19 6 -0.2889 -8.6861 6.1898 20 17 -1.3844 -9.6420 7.1383 21 6 1.0400 -8.7192 6.3840 22 16 1.7946 -7.6609 5.2718 23 6 2.0696 -4.6199 0.9591 24 1 2.9046 -4.2565 1.5581 25 8 2.3815 -5.9146 0.4409 26 6 1.8136 -3.6528 -0.2011 27 1 -0.4849 0.8401 -0.0004 28 1 0.0991 -1.3355 1.6674 29 1 -0.6777 -2.6386 0.7339 30 1 1.3470 -2.9701 2.9971 31 1 -0.3834 -3.3864 3.0506 32 1 1.9422 -5.8286 3.2328 33 1 1.5505 -9.3205 7.1217 34 1 3.1658 -5.9334 -0.1244 35 1 1.0400 -4.0598 -0.8521 36 1 2.7330 -3.5126 -0.7696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090519577.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:18 Heat of formation + Delta-G solvation = -40.886020 kcal Electronic energy + Delta-G solvation = -23554.437309 eV Core-core repulsion = 19805.320508 eV Total energy + Delta-G solvation = -3749.116801 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.57704 -40.66016 -39.31087 -37.64316 -36.95514 -35.92229 -33.87735 -32.21526 -31.38548 -30.21724 -28.06263 -26.65716 -24.30220 -23.77552 -22.67497 -21.56144 -20.80275 -20.13087 -18.90921 -18.21975 -17.98514 -17.39956 -16.97889 -16.76381 -16.66989 -15.83857 -15.65403 -15.55218 -15.23123 -14.92147 -14.70093 -14.46936 -13.89211 -13.64798 -13.30732 -13.25346 -12.98127 -12.81548 -12.66363 -12.40608 -12.23163 -12.14044 -12.07695 -11.90433 -11.80148 -11.31233 -11.05960 -10.99443 -10.91127 -10.57200 -10.28095 -9.91006 -8.74528 -7.88278 -5.35959 -1.06515 -0.14741 -0.02401 0.93917 1.02244 1.50859 1.53144 1.59929 1.67992 1.91678 2.51454 3.09173 3.26564 3.34843 3.62562 3.65193 3.85395 3.95065 4.04476 4.22571 4.32769 4.40618 4.52881 4.62187 4.83074 4.91877 5.02428 5.15102 5.26366 5.38995 5.62867 5.68249 6.00176 6.35516 6.36598 6.89511 6.94029 7.11818 7.80293 8.32750 9.19034 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.002625 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.823575 B =10665.084227 C =11003.252174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.300 1.300 6 H -0.274 1.274 7 C -0.264 4.264 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.180 3.820 11 C -0.132 4.132 12 C 0.171 3.829 13 H 0.062 0.938 14 N -0.687 5.687 15 C 0.591 3.409 16 O -0.550 6.550 17 C -0.035 4.035 18 N -0.437 5.437 19 C 0.078 3.922 20 Cl -0.005 7.005 21 C -0.237 4.237 22 S 0.344 5.656 23 C 0.103 3.897 24 H 0.083 0.917 25 O -0.570 6.570 26 C 0.117 3.883 27 H 0.250 0.750 28 H 0.063 0.937 29 H -0.009 1.009 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.413 0.587 33 H 0.236 0.764 34 H 0.399 0.601 35 H 0.011 0.989 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.078 -18.896 13.929 25.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.199 1.199 5 H -0.227 1.227 6 H -0.199 1.199 7 C -0.394 4.394 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.053 3.947 11 C -0.172 4.172 12 C 0.066 3.934 13 H 0.080 0.920 14 N -0.338 5.338 15 C 0.374 3.626 16 O -0.427 6.427 17 C -0.310 4.310 18 N -0.155 5.155 19 C -0.087 4.087 20 Cl 0.023 6.977 21 C -0.379 4.379 22 S 0.597 5.403 23 C 0.042 3.958 24 H 0.100 0.900 25 O -0.378 6.378 26 C -0.010 4.010 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.009 0.991 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.251 0.749 33 H 0.252 0.748 34 H 0.249 0.751 35 H 0.029 0.971 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.046 -18.465 13.637 25.057 hybrid contribution -0.537 0.509 0.165 0.759 sum 9.508 -17.956 13.802 24.562 Atomic orbital electron populations 1.70199 1.06969 1.26093 1.55048 1.25895 0.95947 1.01873 1.00957 0.85300 0.77446 0.78870 0.78559 1.19893 1.22704 1.19925 1.19538 0.93140 0.85351 1.41359 0.90305 1.44250 1.35611 1.02331 1.50560 1.20539 0.87901 0.97633 0.88624 1.22360 1.01644 0.94078 0.99109 1.20885 0.98124 0.88033 0.86333 0.91985 1.45559 1.08924 1.43334 1.36022 1.16981 0.85120 0.79612 0.80916 1.90858 1.24121 1.64232 1.63468 1.26848 0.94395 1.05484 1.04236 1.65956 1.37090 1.06191 1.06301 1.20602 0.90045 1.00420 0.97593 1.98402 1.64017 1.67586 1.67688 1.27107 0.95995 1.07041 1.07781 1.83535 1.05585 1.29932 1.21215 1.22361 0.95458 0.83475 0.94520 0.89955 1.86443 1.52678 1.28455 1.70218 1.21708 0.98904 0.86179 0.94218 0.94092 0.91826 0.99084 0.90375 0.92387 0.74930 0.74790 0.75072 0.97052 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.88 11.20 21.65 0.24 -54.64 16 2 C -0.05 -2.75 4.92 84.86 0.42 -2.34 16 3 Si 0.97 42.98 29.59 68.60 2.03 45.01 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.26 -13.57 9.58 84.03 0.81 -12.76 16 8 H 0.08 3.79 7.89 -2.91 -0.02 3.77 16 9 N -0.60 -28.54 2.99 -699.10 -2.09 -30.63 16 10 C 0.18 8.64 5.30 86.36 0.46 9.10 16 11 C -0.13 -4.98 5.65 30.67 0.17 -4.81 16 12 C 0.17 5.73 2.13 45.12 0.10 5.83 16 13 H 0.06 2.53 7.57 -2.39 -0.02 2.51 16 14 N -0.69 -18.49 4.92 -445.37 -2.19 -20.68 16 15 C 0.59 18.90 7.77 86.61 0.67 19.57 16 16 O -0.55 -23.39 16.73 -4.12 -0.07 -23.46 16 17 C -0.04 -0.90 7.46 87.24 0.65 -0.25 16 18 N -0.44 -12.54 10.60 -181.16 -1.92 -14.46 16 19 C 0.08 1.64 7.22 83.96 0.61 2.25 16 20 Cl 0.00 -0.10 29.20 -2.72 -0.08 -0.17 16 21 C -0.24 -2.88 10.93 66.93 0.73 -2.14 16 22 S 0.34 4.14 22.30 -56.49 -1.26 2.88 16 23 C 0.10 2.99 3.16 30.78 0.10 3.09 16 24 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 25 O -0.57 -13.60 13.18 -148.98 -1.96 -15.57 16 26 C 0.12 4.36 6.13 86.36 0.53 4.89 16 27 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 28 H 0.06 3.44 6.06 -2.39 -0.01 3.43 16 29 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 30 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.41 7.84 7.74 -92.70 -0.72 7.12 16 33 H 0.24 0.83 8.06 -2.91 -0.02 0.81 16 34 H 0.40 5.75 9.08 -74.06 -0.67 5.08 16 35 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 2.67 7.93 -2.39 -0.02 2.65 16 Total: -1.00 -75.92 335.65 -2.30 -78.22 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -0.24 Total: 11.07 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 5.24 Total: 22.44 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -5.96 Total: -120.41 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -2.03 Total: -39.03 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.26 Total: 2.88 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -0.08 Total: -0.17 kcal Total: -75.92 -2.30 -78.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090519577.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.338 kcal (2) G-P(sol) polarization free energy of solvation -75.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds