Wall clock time and date at job start Tue Mar 31 2020 16:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99707 * 2 1 4 4 H 1.48504 * 109.47268 * 270.00042 * 3 2 1 5 5 H 1.48502 * 109.47416 * 30.00370 * 3 2 1 6 6 H 1.48507 * 109.47127 * 150.00096 * 3 2 1 7 7 C 1.38805 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99878 * 163.12335 * 7 2 1 9 9 N 1.36942 * 120.00309 * 343.11515 * 7 2 1 10 10 C 1.46922 * 120.62727 * 151.60725 * 9 7 2 11 11 C 1.53194 * 108.77648 * 126.66883 * 10 9 7 12 12 C 1.53042 * 109.30998 * 54.63102 * 11 10 9 13 13 H 1.08996 * 109.46243 * 58.65537 * 12 11 10 14 14 N 1.46507 * 109.44494 * 178.62321 * 12 11 10 15 15 C 1.34775 * 119.99867 * 275.05679 * 14 12 11 16 16 O 1.21633 * 120.00246 * 0.02562 * 15 14 12 17 17 C 1.47241 * 119.99743 * 180.02562 * 15 14 12 18 18 C 1.35153 * 123.13448 * 179.73661 * 17 15 14 19 19 S 1.70939 * 108.86011 * 179.90246 * 18 17 15 20 20 C 1.70769 * 91.14652 * 0.29915 * 19 18 17 21 21 Cl 1.73602 * 124.72158 * 179.82649 * 20 19 18 22 22 N 1.28764 * 110.54861 * 359.81922 * 20 19 18 23 23 C 1.53037 * 109.53830 * 298.63304 * 12 11 10 24 24 H 1.09001 * 109.50277 * 301.41944 * 23 12 11 25 25 O 1.42898 * 109.49963 * 181.31908 * 23 12 11 26 26 C 1.46921 * 120.62733 * 331.88271 * 9 7 2 27 27 H 0.96995 * 120.00418 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.58165 * 246.45378 * 10 9 7 29 29 H 1.08999 * 109.59419 * 6.87345 * 10 9 7 30 30 H 1.08993 * 109.49591 * 294.68031 * 11 10 9 31 31 H 1.09003 * 109.52255 * 174.59456 * 11 10 9 32 32 H 0.97003 * 119.99529 * 95.05948 * 14 12 11 33 33 H 1.07999 * 125.57241 * 0.02562 * 18 17 15 34 34 H 0.96708 * 114.00395 * 180.16387 * 25 23 12 35 35 H 1.09002 * 109.58788 * 353.12197 * 26 9 7 36 36 H 1.09011 * 109.58401 * 113.54526 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0554 -1.2221 -0.2721 9 7 1.3699 -2.3627 0.3434 10 6 1.8111 -3.6520 -0.2057 11 6 2.0606 -4.6221 0.9534 12 6 0.8038 -4.7060 1.8226 13 1 -0.0364 -5.0414 1.2148 14 7 1.0279 -5.6581 2.9134 15 6 0.8214 -6.9746 2.7119 16 8 0.4494 -7.3724 1.6243 17 6 1.0461 -7.9313 3.8083 18 6 0.8540 -9.2627 3.6780 19 16 1.2229 -10.0224 5.1643 20 6 1.6042 -8.5184 5.8776 21 17 2.1226 -8.3064 7.5208 22 7 1.4539 -7.5636 5.0269 23 6 0.4922 -3.3261 2.4063 24 1 1.3420 -2.9792 2.9941 25 8 -0.6636 -3.4118 3.2423 26 6 0.2248 -2.3413 1.2637 27 1 -0.4850 0.8400 0.0004 28 1 1.0372 -4.0548 -0.8592 29 1 2.7328 -3.5126 -0.7705 30 1 2.8957 -4.2631 1.5548 31 1 2.2957 -5.6101 0.5573 32 1 1.3249 -5.3408 3.7807 33 1 0.5234 -9.7649 2.7809 34 1 -0.9211 -2.5710 3.6449 35 1 0.1001 -1.3370 1.6686 36 1 -0.6785 -2.6373 0.7301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090709739.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:22 Heat of formation + Delta-G solvation = -19.864237 kcal Electronic energy + Delta-G solvation = -23685.157732 eV Core-core repulsion = 19936.952504 eV Total energy + Delta-G solvation = -3748.205228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.73014 -39.14064 -37.76957 -37.26545 -35.25407 -34.39071 -32.18054 -30.87458 -29.55857 -28.86824 -26.43076 -24.95390 -23.13534 -22.23686 -21.48318 -20.14478 -19.67163 -18.97435 -17.20432 -16.79000 -16.51941 -16.34247 -15.76953 -15.64196 -14.83649 -14.41902 -14.33554 -14.12514 -13.79723 -13.55812 -13.29374 -12.74845 -12.37869 -12.27872 -12.18513 -11.94902 -11.88333 -11.67372 -11.22174 -10.84019 -10.78353 -10.43681 -10.41266 -10.22719 -10.14631 -10.13610 -9.99599 -9.57558 -9.35480 -9.32277 -8.76071 -8.53232 -6.77549 -5.87036 -3.30980 0.01494 0.26137 1.03734 1.40288 1.60421 3.27507 3.31043 3.34158 3.40622 3.42739 4.01343 4.41477 4.59870 4.80939 4.85784 5.28434 5.33723 5.40719 5.46647 5.60257 5.91960 5.99935 6.10125 6.21477 6.42599 6.44949 6.69794 6.73292 6.85943 6.91296 7.12252 7.45558 7.69440 7.73220 8.11602 8.28747 8.36731 9.11316 9.74051 10.30432 11.21401 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.022775 B = 0.002703 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.141420 B =10354.522230 C =10891.470306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.140 4.140 12 C 0.161 3.839 13 H 0.090 0.910 14 N -0.692 5.692 15 C 0.590 3.410 16 O -0.535 6.535 17 C 0.029 3.971 18 C -0.223 4.223 19 S 0.275 5.725 20 C 0.045 3.955 21 Cl 0.032 6.968 22 N -0.427 5.427 23 C 0.072 3.928 24 H 0.053 0.947 25 O -0.572 6.572 26 C 0.149 3.851 27 H 0.255 0.745 28 H 0.024 0.976 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.407 0.593 33 H 0.200 0.800 34 H 0.376 0.624 35 H 0.094 0.906 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.657 -19.665 13.987 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.019 3.981 11 C -0.180 4.180 12 C 0.057 3.943 13 H 0.108 0.892 14 N -0.340 5.340 15 C 0.372 3.628 16 O -0.412 6.412 17 C -0.106 4.106 18 C -0.365 4.365 19 S 0.527 5.473 20 C -0.260 4.260 21 Cl 0.059 6.941 22 N -0.146 5.146 23 C 0.011 3.989 24 H 0.071 0.929 25 O -0.377 6.377 26 C 0.022 3.978 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.242 0.758 33 H 0.217 0.783 34 H 0.223 0.777 35 H 0.112 0.888 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.475 -20.800 13.706 25.033 hybrid contribution 0.433 2.397 0.122 2.439 sum 2.909 -18.403 13.828 23.202 Atomic orbital electron populations 1.70024 1.05271 1.25712 1.53576 1.25088 0.95321 0.98563 1.00609 0.86287 0.79159 0.83438 0.77836 1.21272 1.21513 1.20410 1.19191 0.92672 0.84555 1.42133 0.91392 1.44014 1.35668 1.02006 1.49610 1.20939 0.98320 0.86282 0.92597 1.22432 0.96586 1.00310 0.98674 1.21101 0.98889 0.86808 0.87492 0.89169 1.45967 1.66298 1.05552 1.16231 1.16934 0.78109 0.82146 0.85563 1.90829 1.47479 1.78600 1.24307 1.20404 1.05530 0.93074 0.91624 1.26827 1.06532 0.97867 1.05299 1.82935 1.57122 1.07408 0.99832 1.27159 1.08712 0.94946 0.95160 1.98446 1.88287 1.97221 1.10127 1.66688 1.13337 1.33945 1.00605 1.22973 0.87191 0.95256 0.93439 0.92930 1.86419 1.48147 1.36919 1.66209 1.21415 0.89830 0.98002 0.88528 0.93476 0.95782 0.92034 0.91881 0.91750 0.75796 0.78332 0.77690 0.88812 0.95170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.52 11.20 55.49 0.62 -24.89 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.26 -6.85 9.58 -15.06 -0.14 -7.00 16 8 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 9 N -0.59 -14.46 2.99 -172.32 -0.52 -14.98 16 10 C 0.15 3.07 6.51 -3.71 -0.02 3.05 16 11 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 12 C 0.16 2.99 2.12 -67.89 -0.14 2.85 16 13 H 0.09 1.89 7.58 -51.93 -0.39 1.49 16 14 N -0.69 -11.42 4.91 -54.90 -0.27 -11.69 16 15 C 0.59 9.70 7.76 -12.60 -0.10 9.60 16 16 O -0.53 -10.09 16.37 5.25 0.09 -10.01 16 17 C 0.03 0.38 6.70 -84.52 -0.57 -0.19 16 18 C -0.22 -2.23 10.61 29.63 0.31 -1.92 16 19 S 0.28 1.95 22.96 -107.50 -2.47 -0.52 16 20 C 0.04 0.45 7.98 51.48 0.41 0.86 16 21 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.25 16 22 N -0.43 -5.44 10.13 -9.45 -0.10 -5.54 16 23 C 0.07 1.38 3.14 -26.61 -0.08 1.30 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 O -0.57 -10.14 13.16 -35.23 -0.46 -10.60 16 26 C 0.15 3.47 4.92 -3.71 -0.02 3.45 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.41 6.29 8.12 -40.82 -0.33 5.96 16 33 H 0.20 1.71 8.03 -52.49 -0.42 1.29 16 34 H 0.38 5.35 9.08 45.56 0.41 5.77 16 35 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 36 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 LS Contribution 335.59 15.07 5.06 5.06 Total: -1.00 -31.58 335.59 -8.31 -39.89 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -3.12 Total: 9.14 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -0.59 Total: 9.28 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.26 Total: -57.11 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.38 Total: -20.61 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.47 Total: -0.52 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.58 -8.31 -39.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090709739.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.021 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds