Wall clock time and date at job start Tue Mar 31 2020 16:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99707 * 2 1 4 4 H 1.48504 * 109.47268 * 270.00042 * 3 2 1 5 5 H 1.48502 * 109.47416 * 30.00370 * 3 2 1 6 6 H 1.48507 * 109.47127 * 150.00096 * 3 2 1 7 7 C 1.38805 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99878 * 163.12335 * 7 2 1 9 9 N 1.36942 * 120.00309 * 343.11515 * 7 2 1 10 10 C 1.46922 * 120.62727 * 151.60725 * 9 7 2 11 11 C 1.53194 * 108.77648 * 126.66883 * 10 9 7 12 12 C 1.53042 * 109.30998 * 54.63102 * 11 10 9 13 13 H 1.08996 * 109.46243 * 58.65537 * 12 11 10 14 14 N 1.46507 * 109.44494 * 178.62321 * 12 11 10 15 15 C 1.34775 * 119.99867 * 275.05679 * 14 12 11 16 16 O 1.21633 * 120.00246 * 0.02562 * 15 14 12 17 17 C 1.47241 * 119.99743 * 180.02562 * 15 14 12 18 18 C 1.35153 * 123.13448 * 179.73661 * 17 15 14 19 19 S 1.70939 * 108.86011 * 179.90246 * 18 17 15 20 20 C 1.70769 * 91.14652 * 0.29915 * 19 18 17 21 21 Cl 1.73602 * 124.72158 * 179.82649 * 20 19 18 22 22 N 1.28764 * 110.54861 * 359.81922 * 20 19 18 23 23 C 1.53037 * 109.53830 * 298.63304 * 12 11 10 24 24 H 1.09001 * 109.50277 * 301.41944 * 23 12 11 25 25 O 1.42898 * 109.49963 * 181.31908 * 23 12 11 26 26 C 1.46921 * 120.62733 * 331.88271 * 9 7 2 27 27 H 0.96995 * 120.00418 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.58165 * 246.45378 * 10 9 7 29 29 H 1.08999 * 109.59419 * 6.87345 * 10 9 7 30 30 H 1.08993 * 109.49591 * 294.68031 * 11 10 9 31 31 H 1.09003 * 109.52255 * 174.59456 * 11 10 9 32 32 H 0.97003 * 119.99529 * 95.05948 * 14 12 11 33 33 H 1.07999 * 125.57241 * 0.02562 * 18 17 15 34 34 H 0.96708 * 114.00395 * 180.16387 * 25 23 12 35 35 H 1.09002 * 109.58788 * 353.12197 * 26 9 7 36 36 H 1.09011 * 109.58401 * 113.54526 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0554 -1.2221 -0.2721 9 7 1.3699 -2.3627 0.3434 10 6 1.8111 -3.6520 -0.2057 11 6 2.0606 -4.6221 0.9534 12 6 0.8038 -4.7060 1.8226 13 1 -0.0364 -5.0414 1.2148 14 7 1.0279 -5.6581 2.9134 15 6 0.8214 -6.9746 2.7119 16 8 0.4494 -7.3724 1.6243 17 6 1.0461 -7.9313 3.8083 18 6 0.8540 -9.2627 3.6780 19 16 1.2229 -10.0224 5.1643 20 6 1.6042 -8.5184 5.8776 21 17 2.1226 -8.3064 7.5208 22 7 1.4539 -7.5636 5.0269 23 6 0.4922 -3.3261 2.4063 24 1 1.3420 -2.9792 2.9941 25 8 -0.6636 -3.4118 3.2423 26 6 0.2248 -2.3413 1.2637 27 1 -0.4850 0.8400 0.0004 28 1 1.0372 -4.0548 -0.8592 29 1 2.7328 -3.5126 -0.7705 30 1 2.8957 -4.2631 1.5548 31 1 2.2957 -5.6101 0.5573 32 1 1.3249 -5.3408 3.7807 33 1 0.5234 -9.7649 2.7809 34 1 -0.9211 -2.5710 3.6449 35 1 0.1001 -1.3370 1.6686 36 1 -0.6785 -2.6373 0.7301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090709739.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:21 Heat of formation + Delta-G solvation = -44.732369 kcal Electronic energy + Delta-G solvation = -23686.236095 eV Core-core repulsion = 19936.952504 eV Total energy + Delta-G solvation = -3749.283591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.76684 -40.40798 -39.19145 -37.98295 -36.91869 -35.90806 -33.98089 -31.84331 -31.19889 -30.54829 -27.69886 -26.45104 -24.50874 -23.79354 -23.01511 -21.38075 -20.94404 -20.14318 -18.88787 -18.16305 -17.90027 -17.42411 -17.02393 -16.74192 -16.54722 -15.74173 -15.59902 -15.53676 -15.11407 -15.01387 -14.90871 -14.44496 -13.88978 -13.59360 -13.38822 -13.18563 -13.03808 -12.94676 -12.66397 -12.57021 -12.56057 -12.12079 -12.04925 -11.90456 -11.57110 -11.26688 -11.09079 -10.96333 -10.85061 -10.61377 -10.25188 -9.94315 -8.77079 -7.91590 -5.39196 -0.75114 -0.40728 0.29052 0.63922 0.69576 1.47933 1.49654 1.59473 2.07381 2.15432 2.49149 3.03508 3.12098 3.27144 3.61095 3.83914 3.95625 4.00867 4.02688 4.27764 4.38331 4.42254 4.46385 4.66519 4.84959 4.89579 5.02335 5.13713 5.30480 5.35701 5.54010 5.62997 5.96906 6.32615 6.46210 6.78815 7.03545 7.08988 7.76280 8.29619 9.15232 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.022775 B = 0.002703 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.141420 B =10354.522230 C =10891.470306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.047 4.047 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.267 4.267 8 H 0.073 0.927 9 N -0.605 5.605 10 C 0.143 3.857 11 C -0.123 4.123 12 C 0.168 3.832 13 H 0.063 0.937 14 N -0.689 5.689 15 C 0.589 3.411 16 O -0.568 6.568 17 C -0.003 4.003 18 C -0.224 4.224 19 S 0.392 5.608 20 C 0.020 3.980 21 Cl 0.040 6.960 22 N -0.455 5.455 23 C 0.092 3.908 24 H 0.062 0.938 25 O -0.574 6.574 26 C 0.159 3.841 27 H 0.252 0.748 28 H 0.013 0.987 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.413 0.587 33 H 0.211 0.789 34 H 0.392 0.608 35 H 0.071 0.929 36 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 -21.515 15.709 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.798 3.202 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.397 4.397 8 H 0.090 0.910 9 N -0.329 5.329 10 C 0.017 3.983 11 C -0.163 4.163 12 C 0.064 3.936 13 H 0.082 0.918 14 N -0.338 5.338 15 C 0.374 3.626 16 O -0.447 6.447 17 C -0.138 4.138 18 C -0.367 4.367 19 S 0.645 5.355 20 C -0.284 4.284 21 Cl 0.067 6.933 22 N -0.174 5.174 23 C 0.031 3.969 24 H 0.080 0.920 25 O -0.381 6.381 26 C 0.032 3.968 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.250 0.750 33 H 0.228 0.772 34 H 0.241 0.759 35 H 0.089 0.911 36 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 3.736 -22.678 15.477 27.709 hybrid contribution 0.007 2.800 -0.375 2.825 sum 3.742 -19.878 15.102 25.243 Atomic orbital electron populations 1.70180 1.06706 1.26128 1.54940 1.25850 0.96051 1.01635 1.00769 0.85248 0.78146 0.79274 0.77568 1.21282 1.21767 1.19292 1.19540 0.93063 0.85528 1.41593 0.90979 1.44259 1.35689 1.02659 1.50328 1.21037 0.98101 0.85532 0.93634 1.22226 0.96638 0.99889 0.97579 1.20790 0.98027 0.86916 0.87903 0.91832 1.45786 1.66613 1.05576 1.15777 1.17357 0.76948 0.82232 0.86108 1.90799 1.48927 1.79097 1.25914 1.19901 1.09075 0.93364 0.91431 1.27189 1.04587 0.97342 1.07632 1.82593 1.53545 1.03450 0.95917 1.27485 1.08909 0.96523 0.95460 1.98449 1.88204 1.97356 1.09264 1.66590 1.14437 1.35677 1.00738 1.22567 0.87842 0.94505 0.92019 0.92017 1.86400 1.47649 1.38260 1.65774 1.21196 0.88479 0.97797 0.89284 0.93887 0.96915 0.91279 0.91020 0.90728 0.75046 0.77200 0.75855 0.91077 0.98371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.19 11.20 21.65 0.24 -53.95 16 2 C -0.05 -2.59 4.92 84.86 0.42 -2.17 16 3 Si 0.97 43.75 29.59 68.60 2.03 45.78 16 4 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.27 -14.42 9.58 84.03 0.81 -13.61 16 8 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 9 N -0.60 -30.26 2.99 -699.09 -2.09 -32.35 16 10 C 0.14 6.11 6.51 86.36 0.56 6.68 16 11 C -0.12 -4.49 5.65 30.67 0.17 -4.32 16 12 C 0.17 6.32 2.12 45.02 0.10 6.42 16 13 H 0.06 2.75 7.58 -2.39 -0.02 2.73 16 14 N -0.69 -22.59 4.91 -445.83 -2.19 -24.78 16 15 C 0.59 19.23 7.76 86.61 0.67 19.90 16 16 O -0.57 -21.57 16.37 -4.14 -0.07 -21.64 16 17 C 0.00 -0.07 6.70 40.52 0.27 0.20 16 18 C -0.22 -3.98 10.61 67.11 0.71 -3.26 16 19 S 0.39 4.17 22.96 -56.49 -1.30 2.87 16 20 C 0.02 0.35 7.98 130.69 1.04 1.39 16 21 Cl 0.04 0.59 29.33 -2.72 -0.08 0.51 16 22 N -0.46 -10.95 10.13 -183.80 -1.86 -12.81 16 23 C 0.09 3.54 3.14 30.67 0.10 3.63 16 24 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 25 O -0.57 -20.30 13.16 -148.98 -1.96 -22.27 16 26 C 0.16 7.65 4.92 86.36 0.42 8.08 16 27 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.01 0.57 8.14 -2.39 -0.02 0.56 16 29 H 0.07 2.80 7.93 -2.39 -0.02 2.79 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.41 12.54 8.12 -92.71 -0.75 11.79 16 33 H 0.21 3.12 8.03 -2.91 -0.02 3.10 16 34 H 0.39 11.04 9.08 -74.05 -0.67 10.37 16 35 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 36 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 Total: -1.00 -69.44 335.59 -2.28 -71.72 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -0.27 Total: 23.98 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 5.27 Total: 22.94 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -5.90 Total: -123.89 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -2.03 Total: -43.91 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -1.30 Total: 2.87 kcal Atomic # 17 Polarization: 0.59 SS G_CDS: -0.08 Total: 0.51 kcal Total: -69.44 -2.28 -71.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090709739.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.987 kcal (2) G-P(sol) polarization free energy of solvation -69.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds