Wall clock time and date at job start Tue Mar 31 2020 17:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 120.00308 * 2 1 4 4 H 1.48498 * 109.46636 * 90.00341 * 3 2 1 5 5 H 1.48495 * 109.47280 * 210.00238 * 3 2 1 6 6 H 1.48498 * 109.46761 * 330.00705 * 3 2 1 7 7 C 1.38811 * 119.99784 * 179.72815 * 2 1 3 8 8 H 1.07999 * 119.99839 * 18.76432 * 7 2 1 9 9 N 1.36939 * 119.99908 * 198.76094 * 7 2 1 10 10 C 1.46916 * 120.63088 * 31.07285 * 9 7 2 11 11 C 1.53632 * 108.54296 * 126.36886 * 10 9 7 12 12 C 1.53034 * 109.24108 * 54.85690 * 11 10 9 13 13 H 1.09003 * 109.46243 * 58.53264 * 12 11 10 14 14 N 1.46505 * 109.44864 * 178.49716 * 12 11 10 15 15 C 1.34775 * 120.00172 * 275.06045 * 14 12 11 16 16 O 1.21706 * 119.99808 * 359.97438 * 15 14 12 17 17 C 1.46514 * 120.00014 * 179.97438 * 15 14 12 18 18 S 1.76211 * 126.17857 * 0.02710 * 17 15 14 19 19 C 1.70918 * 90.38974 * 179.97438 * 18 17 15 20 20 N 1.29353 * 110.62208 * 359.97438 * 19 18 17 21 21 C 1.31042 * 117.45266 * 359.74968 * 20 19 18 22 22 Cl 1.73607 * 123.05495 * 180.27074 * 21 20 19 23 23 C 1.53038 * 109.53710 * 298.51244 * 12 11 10 24 24 H 1.08996 * 109.49748 * 301.41177 * 23 12 11 25 25 O 1.42904 * 109.49871 * 181.31951 * 23 12 11 26 26 C 1.46927 * 120.63019 * 211.35372 * 9 7 2 27 27 H 0.96996 * 120.00554 * 174.95015 * 1 2 3 28 28 H 1.09002 * 109.58866 * 246.20235 * 10 9 7 29 29 H 1.08999 * 109.58814 * 6.62556 * 10 9 7 30 30 H 1.09003 * 109.62932 * 294.86445 * 11 10 9 31 31 H 1.09005 * 109.45672 * 174.73891 * 11 10 9 32 32 H 0.97000 * 119.99284 * 95.06029 * 14 12 11 33 33 H 1.08004 * 124.68890 * 180.02562 * 19 18 17 34 34 H 0.96702 * 114.00522 * 180.16176 * 25 23 12 35 35 H 1.09010 * 109.58538 * 353.37539 * 26 9 7 36 36 H 1.08995 * 109.58850 * 113.65164 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4402 -0.7001 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 0.0057 8 1 1.5132 -2.1140 -0.2908 9 7 3.3250 -1.2319 0.3873 10 6 3.8371 -0.2809 1.3832 11 6 4.5270 -1.0723 2.5048 12 6 5.5970 -1.9813 1.8960 13 1 6.3196 -1.3758 1.3489 14 7 6.2824 -2.7117 2.9652 15 6 7.3174 -2.1424 3.6141 16 8 7.6829 -1.0216 3.3116 17 6 8.0025 -2.8727 4.6837 18 16 7.6120 -4.4945 5.2513 19 6 8.8769 -4.4105 6.3977 20 7 9.4888 -3.2736 6.3185 21 6 9.0653 -2.4210 5.4179 22 17 9.7835 -0.8583 5.1816 23 6 4.9382 -2.9775 0.9391 24 1 4.1979 -3.5666 1.4803 25 8 5.9341 -3.8458 0.3946 26 6 4.2518 -2.2114 -0.1961 27 1 -0.4851 -0.8367 -0.0739 28 1 4.5543 0.3911 0.9118 29 1 3.0099 0.2961 1.7966 30 1 3.7904 -1.6793 3.0312 31 1 4.9938 -0.3787 3.2043 32 1 5.9912 -3.6051 3.2060 33 1 9.1308 -5.1981 7.0918 34 1 5.5872 -4.5032 -0.2240 35 1 3.6982 -2.9087 -0.8251 36 1 5.0006 -1.6940 -0.7957 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090813840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:12 Heat of formation + Delta-G solvation = -13.647429 kcal Electronic energy + Delta-G solvation = -23943.367378 eV Core-core repulsion = 20195.431731 eV Total energy + Delta-G solvation = -3747.935647 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.48875 -39.62111 -38.09134 -36.76678 -35.68881 -34.56604 -32.32482 -31.17786 -29.99726 -29.13776 -26.61979 -24.91071 -22.81923 -22.51888 -21.27561 -20.50536 -19.95557 -19.13744 -17.64303 -17.22084 -16.90585 -16.31971 -15.73670 -15.62978 -15.03292 -14.62232 -14.48167 -14.46364 -13.99227 -13.82987 -13.65281 -12.97104 -12.56962 -12.52966 -12.31160 -12.06268 -11.99319 -11.47534 -11.25917 -11.22041 -11.01799 -10.50094 -10.26577 -10.10213 -10.06481 -9.97633 -9.81372 -9.75337 -9.28890 -9.23052 -8.92647 -8.59122 -7.17778 -6.32685 -3.47486 -0.29143 0.51299 0.90370 1.83272 1.92667 2.95277 2.97695 3.38000 3.51697 3.66321 3.95008 4.20638 4.44325 4.51501 4.67798 4.90679 5.04994 5.09415 5.29065 5.35904 5.50560 5.68121 5.73469 5.92214 6.14285 6.23518 6.34694 6.47478 6.51390 6.57284 6.73713 6.86906 7.37967 7.71222 7.93016 8.06310 8.34691 8.94760 9.47254 10.07876 11.05007 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.003359 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.654435 B = 8332.673904 C = 9047.351840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 1.064 2.936 4 H -0.291 1.291 5 H -0.283 1.283 6 H -0.298 1.298 7 C -0.350 4.350 8 H 0.065 0.935 9 N -0.601 5.601 10 C 0.125 3.875 11 C -0.142 4.142 12 C 0.164 3.836 13 H 0.094 0.906 14 N -0.707 5.707 15 C 0.590 3.410 16 O -0.506 6.506 17 C -0.275 4.275 18 S 0.213 5.787 19 C 0.038 3.962 20 N -0.469 5.469 21 C 0.175 3.825 22 Cl 0.031 6.969 23 C 0.080 3.920 24 H 0.059 0.941 25 O -0.570 6.570 26 C 0.122 3.878 27 H 0.264 0.736 28 H 0.033 0.967 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.395 0.605 33 H 0.214 0.786 34 H 0.376 0.624 35 H 0.066 0.934 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.470 -12.350 11.388 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.213 4.213 3 Si 0.895 3.105 4 H -0.219 1.219 5 H -0.209 1.209 6 H -0.225 1.225 7 C -0.479 4.479 8 H 0.083 0.917 9 N -0.326 5.326 10 C -0.001 4.001 11 C -0.182 4.182 12 C 0.060 3.940 13 H 0.112 0.888 14 N -0.357 5.357 15 C 0.373 3.627 16 O -0.382 6.382 17 C -0.401 4.401 18 S 0.466 5.534 19 C -0.257 4.257 20 N -0.183 5.183 21 C 0.010 3.990 22 Cl 0.060 6.940 23 C 0.019 3.981 24 H 0.077 0.923 25 O -0.374 6.374 26 C -0.006 4.006 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.228 0.772 33 H 0.231 0.769 34 H 0.223 0.777 35 H 0.084 0.916 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 16.672 -10.110 11.684 22.731 hybrid contribution 0.184 -1.697 -0.240 1.723 sum 16.856 -11.806 11.445 23.548 Atomic orbital electron populations 1.70910 1.06066 1.30077 1.48584 1.26275 0.96580 1.01375 0.97057 0.83788 0.74795 0.75660 0.76292 1.21890 1.20918 1.22546 1.20195 0.85321 0.95035 1.47348 0.91685 1.44318 1.06992 1.37368 1.43922 1.21517 0.97316 0.92255 0.88974 1.22529 0.97109 0.98851 0.99714 1.21041 0.94314 0.92572 0.86043 0.88759 1.45938 1.32828 1.19574 1.37393 1.16502 0.80012 0.85615 0.80549 1.90905 1.64813 1.17668 1.64839 1.25848 1.05528 1.00559 1.08199 1.84077 1.31398 1.09592 1.28339 1.28571 0.96440 0.98047 1.02637 1.65666 1.29885 1.02240 1.20549 1.21147 0.92809 0.91936 0.93084 1.98456 1.81938 1.18570 1.95035 1.22746 0.89008 0.90929 0.95460 0.92285 1.86475 1.37020 1.49219 1.64733 1.21571 0.93041 0.92967 0.93002 0.92616 0.94876 0.90112 0.91389 0.91212 0.77153 0.76913 0.77680 0.91563 0.94852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.75 13.70 55.49 0.76 -26.99 16 2 C -0.01 -0.30 5.24 -17.43 -0.09 -0.39 16 3 Si 1.06 26.04 24.73 -169.99 -4.20 21.84 16 4 H -0.29 -6.72 6.56 56.52 0.37 -6.35 16 5 H -0.28 -6.68 6.81 56.52 0.38 -6.29 16 6 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 7 C -0.35 -9.45 9.88 -15.06 -0.15 -9.59 16 8 H 0.07 1.86 8.06 -52.49 -0.42 1.43 16 9 N -0.60 -13.74 2.71 -172.06 -0.47 -14.21 16 10 C 0.13 2.67 4.23 -3.49 -0.01 2.66 16 11 C -0.14 -2.52 5.67 -26.39 -0.15 -2.67 16 12 C 0.16 2.67 2.12 -67.89 -0.14 2.53 16 13 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 14 N -0.71 -9.80 4.91 -55.12 -0.27 -10.07 16 15 C 0.59 8.81 7.74 -12.93 -0.10 8.71 16 16 O -0.51 -9.13 14.83 5.18 0.08 -9.05 16 17 C -0.28 -3.38 6.52 -36.76 -0.24 -3.62 16 18 S 0.21 1.58 22.35 -107.50 -2.40 -0.82 16 19 C 0.04 0.27 12.20 51.72 0.63 0.90 16 20 N -0.47 -5.15 10.50 -12.22 -0.13 -5.28 16 21 C 0.18 2.25 7.41 -18.39 -0.14 2.11 16 22 Cl 0.03 0.43 27.38 -51.86 -1.42 -0.99 16 23 C 0.08 1.24 3.14 -26.61 -0.08 1.15 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 25 O -0.57 -7.67 13.16 -35.23 -0.46 -8.13 16 26 C 0.12 2.29 6.14 -3.71 -0.02 2.26 16 27 H 0.26 7.87 8.73 -40.82 -0.36 7.51 16 28 H 0.03 0.71 7.10 -51.93 -0.37 0.34 16 29 H 0.08 1.86 4.77 -51.93 -0.25 1.61 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.39 4.50 7.79 -40.82 -0.32 4.19 16 33 H 0.21 0.55 8.06 -52.48 -0.42 0.12 16 34 H 0.38 3.53 9.08 45.56 0.41 3.95 16 35 H 0.07 1.21 7.93 -51.92 -0.41 0.79 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 326.70 15.07 4.92 4.92 Total: -1.00 -33.67 326.70 -7.16 -40.83 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -3.06 Total: 3.89 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -0.50 Total: 4.06 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.11 Total: -56.55 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.39 Total: -17.18 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -4.20 Total: 21.84 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.40 Total: -0.82 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -1.42 Total: -0.99 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.67 -7.16 -40.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090813840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.182 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds