Wall clock time and date at job start Tue Mar 31 2020 17:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 120.00308 * 2 1 4 4 H 1.48498 * 109.46636 * 90.00341 * 3 2 1 5 5 H 1.48495 * 109.47280 * 210.00238 * 3 2 1 6 6 H 1.48498 * 109.46761 * 330.00705 * 3 2 1 7 7 C 1.38811 * 119.99784 * 179.72815 * 2 1 3 8 8 H 1.07999 * 119.99839 * 18.76432 * 7 2 1 9 9 N 1.36939 * 119.99908 * 198.76094 * 7 2 1 10 10 C 1.46916 * 120.63088 * 31.07285 * 9 7 2 11 11 C 1.53632 * 108.54296 * 126.36886 * 10 9 7 12 12 C 1.53034 * 109.24108 * 54.85690 * 11 10 9 13 13 H 1.09003 * 109.46243 * 58.53264 * 12 11 10 14 14 N 1.46505 * 109.44864 * 178.49716 * 12 11 10 15 15 C 1.34775 * 120.00172 * 275.06045 * 14 12 11 16 16 O 1.21706 * 119.99808 * 359.97438 * 15 14 12 17 17 C 1.46514 * 120.00014 * 179.97438 * 15 14 12 18 18 S 1.76211 * 126.17857 * 0.02710 * 17 15 14 19 19 C 1.70918 * 90.38974 * 179.97438 * 18 17 15 20 20 N 1.29353 * 110.62208 * 359.97438 * 19 18 17 21 21 C 1.31042 * 117.45266 * 359.74968 * 20 19 18 22 22 Cl 1.73607 * 123.05495 * 180.27074 * 21 20 19 23 23 C 1.53038 * 109.53710 * 298.51244 * 12 11 10 24 24 H 1.08996 * 109.49748 * 301.41177 * 23 12 11 25 25 O 1.42904 * 109.49871 * 181.31951 * 23 12 11 26 26 C 1.46927 * 120.63019 * 211.35372 * 9 7 2 27 27 H 0.96996 * 120.00554 * 174.95015 * 1 2 3 28 28 H 1.09002 * 109.58866 * 246.20235 * 10 9 7 29 29 H 1.08999 * 109.58814 * 6.62556 * 10 9 7 30 30 H 1.09003 * 109.62932 * 294.86445 * 11 10 9 31 31 H 1.09005 * 109.45672 * 174.73891 * 11 10 9 32 32 H 0.97000 * 119.99284 * 95.06029 * 14 12 11 33 33 H 1.08004 * 124.68890 * 180.02562 * 19 18 17 34 34 H 0.96702 * 114.00522 * 180.16176 * 25 23 12 35 35 H 1.09010 * 109.58538 * 353.37539 * 26 9 7 36 36 H 1.08995 * 109.58850 * 113.65164 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4402 -0.7001 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 0.0057 8 1 1.5132 -2.1140 -0.2908 9 7 3.3250 -1.2319 0.3873 10 6 3.8371 -0.2809 1.3832 11 6 4.5270 -1.0723 2.5048 12 6 5.5970 -1.9813 1.8960 13 1 6.3196 -1.3758 1.3489 14 7 6.2824 -2.7117 2.9652 15 6 7.3174 -2.1424 3.6141 16 8 7.6829 -1.0216 3.3116 17 6 8.0025 -2.8727 4.6837 18 16 7.6120 -4.4945 5.2513 19 6 8.8769 -4.4105 6.3977 20 7 9.4888 -3.2736 6.3185 21 6 9.0653 -2.4210 5.4179 22 17 9.7835 -0.8583 5.1816 23 6 4.9382 -2.9775 0.9391 24 1 4.1979 -3.5666 1.4803 25 8 5.9341 -3.8458 0.3946 26 6 4.2518 -2.2114 -0.1961 27 1 -0.4851 -0.8367 -0.0739 28 1 4.5543 0.3911 0.9118 29 1 3.0099 0.2961 1.7966 30 1 3.7904 -1.6793 3.0312 31 1 4.9938 -0.3787 3.2043 32 1 5.9912 -3.6051 3.2060 33 1 9.1308 -5.1981 7.0918 34 1 5.5872 -4.5032 -0.2240 35 1 3.6982 -2.9087 -0.8251 36 1 5.0006 -1.6940 -0.7957 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090813840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:10 Heat of formation + Delta-G solvation = -42.110959 kcal Electronic energy + Delta-G solvation = -23944.601649 eV Core-core repulsion = 20195.431731 eV Total energy + Delta-G solvation = -3749.169918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.47621 -40.66752 -39.40664 -37.69121 -37.13959 -35.88914 -34.17120 -32.44946 -31.31519 -30.56254 -27.53650 -26.44143 -24.31847 -23.94125 -22.62362 -21.68430 -21.09100 -20.13709 -19.46137 -18.28197 -18.16619 -17.49023 -16.86373 -16.65911 -16.27192 -15.96464 -15.76310 -15.64992 -15.41873 -15.25301 -14.93828 -14.61150 -14.04846 -13.77538 -13.68589 -13.30004 -13.21824 -12.90383 -12.80305 -12.60947 -12.17930 -11.90135 -11.71109 -11.60953 -11.36135 -11.27791 -11.18228 -10.93598 -10.83115 -10.60309 -10.22359 -9.97145 -9.16593 -8.48369 -5.61674 -1.04880 -0.22765 0.25826 0.99747 1.14191 1.42096 1.54160 1.71221 1.85155 1.91276 2.49581 2.93460 3.12262 3.29612 3.35742 3.65466 3.70073 3.83612 3.96153 4.06939 4.21698 4.29766 4.48587 4.51111 4.66903 4.79323 4.83638 4.89351 5.00504 5.20309 5.28787 5.77004 6.15204 6.24008 6.32757 6.79371 6.88218 6.98676 7.48680 8.02161 8.85151 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.003359 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.654435 B = 8332.673904 C = 9047.351840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.062 4.062 3 Si 1.097 2.903 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.306 1.306 7 C -0.330 4.330 8 H 0.042 0.958 9 N -0.614 5.614 10 C 0.120 3.880 11 C -0.129 4.129 12 C 0.170 3.830 13 H 0.074 0.926 14 N -0.697 5.697 15 C 0.589 3.411 16 O -0.546 6.546 17 C -0.316 4.316 18 S 0.290 5.710 19 C 0.057 3.943 20 N -0.500 5.500 21 C 0.170 3.830 22 Cl 0.007 6.993 23 C 0.101 3.899 24 H 0.069 0.931 25 O -0.568 6.568 26 C 0.118 3.882 27 H 0.252 0.748 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.409 0.591 33 H 0.262 0.738 34 H 0.397 0.603 35 H 0.070 0.930 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.177 -14.878 12.883 26.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.924 3.076 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.234 1.234 7 C -0.460 4.460 8 H 0.060 0.940 9 N -0.340 5.340 10 C -0.005 4.005 11 C -0.170 4.170 12 C 0.065 3.935 13 H 0.092 0.908 14 N -0.348 5.348 15 C 0.374 3.626 16 O -0.425 6.425 17 C -0.443 4.443 18 S 0.545 5.455 19 C -0.236 4.236 20 N -0.215 5.215 21 C 0.003 3.997 22 Cl 0.035 6.965 23 C 0.039 3.961 24 H 0.087 0.913 25 O -0.375 6.375 26 C -0.009 4.009 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.245 0.755 33 H 0.278 0.722 34 H 0.247 0.753 35 H 0.088 0.912 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 18.405 -12.729 13.190 25.976 hybrid contribution -0.293 -1.159 -0.680 1.375 sum 18.112 -13.887 12.511 26.027 Atomic orbital electron populations 1.71004 1.07231 1.29410 1.52072 1.27251 0.96551 1.04391 0.97580 0.83336 0.74150 0.72736 0.77397 1.19834 1.19593 1.23425 1.20114 0.87069 0.93830 1.44992 0.94033 1.44376 1.06294 1.38458 1.44891 1.21513 0.96848 0.92436 0.89708 1.22334 0.97351 0.98890 0.98386 1.20744 0.93430 0.92654 0.86687 0.90755 1.45681 1.32493 1.19949 1.36664 1.16827 0.79736 0.85302 0.80719 1.90878 1.65883 1.19526 1.66168 1.25668 1.06278 1.03742 1.08572 1.83802 1.30003 1.05040 1.26641 1.29463 0.94802 0.97406 1.01953 1.65712 1.31355 1.03433 1.21033 1.21252 0.93027 0.91617 0.93828 1.98438 1.82347 1.20467 1.95205 1.22288 0.89123 0.90687 0.93962 0.91322 1.86454 1.36351 1.49361 1.65354 1.21736 0.92430 0.92371 0.94327 0.93894 0.94702 0.92029 0.90960 0.90882 0.75503 0.72227 0.75265 0.91195 0.94912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.26 13.70 21.65 0.30 -58.97 16 2 C -0.06 -3.54 5.24 84.86 0.44 -3.10 16 3 Si 1.10 52.98 24.73 68.60 1.70 54.68 16 4 H -0.27 -12.17 6.56 99.48 0.65 -11.51 16 5 H -0.27 -12.36 6.81 99.48 0.68 -11.68 16 6 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 7 C -0.33 -17.94 9.88 84.03 0.83 -17.11 16 8 H 0.04 2.43 8.06 -2.91 -0.02 2.40 16 9 N -0.61 -27.66 2.71 -698.26 -1.89 -29.56 16 10 C 0.12 5.04 4.23 86.51 0.37 5.41 16 11 C -0.13 -4.43 5.67 30.82 0.17 -4.25 16 12 C 0.17 5.25 2.12 45.01 0.10 5.34 16 13 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 14 N -0.70 -17.80 4.91 -446.53 -2.19 -20.00 16 15 C 0.59 16.86 7.74 86.40 0.67 17.53 16 16 O -0.55 -19.67 14.83 -4.37 -0.06 -19.74 16 17 C -0.32 -7.15 6.52 24.10 0.16 -7.00 16 18 S 0.29 3.12 22.35 -56.49 -1.26 1.86 16 19 C 0.06 0.56 12.20 130.61 1.59 2.15 16 20 N -0.50 -9.73 10.50 -192.57 -2.02 -11.76 16 21 C 0.17 4.13 7.41 84.48 0.63 4.76 16 22 Cl 0.01 0.19 27.38 -2.72 -0.07 0.12 16 23 C 0.10 2.88 3.14 30.67 0.10 2.97 16 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 25 O -0.57 -13.42 13.16 -148.98 -1.96 -15.38 16 26 C 0.12 4.24 6.14 86.36 0.53 4.77 16 27 H 0.25 15.59 8.73 -92.71 -0.81 14.78 16 28 H 0.04 1.45 7.10 -2.39 -0.02 1.44 16 29 H 0.06 2.81 4.77 -2.39 -0.01 2.80 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 32 H 0.41 8.00 7.79 -92.71 -0.72 7.27 16 33 H 0.26 -0.25 8.06 -2.91 -0.02 -0.27 16 34 H 0.40 5.98 9.08 -74.06 -0.67 5.31 16 35 H 0.07 2.44 7.93 -2.38 -0.02 2.42 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -75.90 326.70 -2.25 -78.15 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -0.36 Total: 9.11 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 5.58 Total: 11.48 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -5.81 Total: -120.28 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -2.03 Total: -35.12 kcal Atomic # 14 Polarization: 52.98 SS G_CDS: 1.70 Total: 54.68 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.26 Total: 1.86 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -0.07 Total: 0.12 kcal Total: -75.90 -2.25 -78.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090813840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.041 kcal (2) G-P(sol) polarization free energy of solvation -75.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds