Wall clock time and date at job start Tue Mar 31 2020 17:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99953 * 2 1 4 4 H 1.48503 * 109.47110 * 240.00222 * 3 2 1 5 5 H 1.48499 * 109.47407 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47053 * 120.00229 * 3 2 1 7 7 C 1.38815 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00078 * 162.88704 * 7 2 1 9 9 N 1.36932 * 119.99520 * 343.16792 * 7 2 1 10 10 C 1.46921 * 120.63174 * 331.89167 * 9 7 2 11 11 C 1.52760 * 109.01057 * 233.58791 * 10 9 7 12 12 C 1.53042 * 109.38363 * 305.58794 * 11 10 9 13 13 H 1.08990 * 109.46139 * 301.21911 * 12 11 10 14 14 N 1.46501 * 109.45037 * 181.24937 * 12 11 10 15 15 C 1.34778 * 119.99637 * 84.93741 * 14 12 11 16 16 O 1.21710 * 120.00061 * 0.02562 * 15 14 12 17 17 C 1.46526 * 119.99760 * 180.02562 * 15 14 12 18 18 S 1.76203 * 126.18013 * 359.69240 * 17 15 14 19 19 C 1.70914 * 90.39043 * 179.97438 * 18 17 15 20 20 N 1.29362 * 110.62135 * 0.35233 * 19 18 17 21 21 C 1.31041 * 117.45227 * 359.72330 * 20 19 18 22 22 Cl 1.73598 * 123.05223 * 180.02562 * 21 20 19 23 23 C 1.53042 * 109.53704 * 61.24152 * 12 11 10 24 24 H 1.08993 * 109.49818 * 178.68428 * 23 12 11 25 25 O 1.42897 * 109.49820 * 58.58174 * 23 12 11 26 26 C 1.46925 * 120.62947 * 152.17927 * 9 7 2 27 27 H 0.97002 * 119.99648 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.59072 * 353.42541 * 10 9 7 29 29 H 1.09005 * 109.58908 * 113.84948 * 10 9 7 30 30 H 1.09005 * 109.56663 * 185.55611 * 11 10 9 31 31 H 1.09001 * 109.36328 * 65.50204 * 11 10 9 32 32 H 0.96996 * 120.00178 * 264.93959 * 14 12 11 33 33 H 1.08004 * 124.69040 * 180.02562 * 19 18 17 34 34 H 0.96705 * 114.00012 * 180.16053 * 25 23 12 35 35 H 1.09000 * 109.58924 * 246.15132 * 26 9 7 36 36 H 1.09000 * 109.58889 * 6.57469 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0545 -1.2230 -0.2747 9 7 1.3696 -2.3624 0.3445 10 6 0.2237 -2.3406 1.2637 11 6 0.4865 -3.3159 2.4098 12 6 0.8069 -4.6984 1.8369 13 1 -0.0290 -5.0415 1.2275 14 7 1.0299 -5.6418 2.9352 15 6 -0.0172 -6.2643 3.5119 16 8 -1.1480 -6.0430 3.1198 17 6 0.2058 -7.2076 4.6108 18 16 1.7655 -7.6529 5.2990 19 6 0.9915 -8.7024 6.4039 20 7 -0.2897 -8.6868 6.2259 21 6 -0.7592 -7.9071 5.2831 22 17 -2.4517 -7.7733 4.9206 23 6 2.0674 -4.6148 0.9729 24 1 2.3083 -5.6041 0.5842 25 8 3.1564 -4.1339 1.7633 26 6 1.8189 -3.6535 -0.1939 27 1 -0.4850 0.8401 0.0004 28 1 0.0952 -1.3349 1.6638 29 1 -0.6782 -2.6420 0.7308 30 1 -0.3978 -3.3809 3.0438 31 1 1.3321 -2.9614 2.9992 32 1 1.9311 -5.8185 3.2474 33 1 1.5020 -9.3002 7.1444 34 1 3.9890 -4.0533 1.2781 35 1 1.0499 -4.0642 -0.8482 36 1 2.7427 -3.5138 -0.7552 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090813841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:25 Heat of formation + Delta-G solvation = -11.252923 kcal Electronic energy + Delta-G solvation = -23958.577076 eV Core-core repulsion = 20210.745262 eV Total energy + Delta-G solvation = -3747.831813 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 7.02 seconds Orbital eigenvalues (eV) -40.40999 -39.49799 -37.94593 -36.71071 -34.97278 -34.40195 -32.04098 -30.97967 -29.83175 -28.77029 -26.55671 -25.08081 -22.78514 -22.26522 -21.22011 -20.36833 -19.65428 -18.97854 -17.39994 -16.99996 -16.20660 -15.90968 -15.64905 -15.33586 -14.96134 -14.61652 -14.41005 -14.19522 -14.01462 -13.72793 -13.23531 -12.85574 -12.50956 -12.13474 -12.05805 -11.94156 -11.29134 -11.20115 -11.04112 -10.85456 -10.74078 -10.43211 -10.35144 -10.27613 -10.06688 -10.00699 -9.93492 -9.67200 -9.38287 -9.21383 -8.78037 -8.43088 -6.69546 -5.79884 -3.22673 -0.23491 0.57048 0.96056 1.88901 1.98124 3.02754 3.10236 3.37705 3.44257 3.44987 4.00732 4.45694 4.50022 4.60527 4.79916 5.10829 5.21157 5.30652 5.38806 5.55685 5.70291 5.90010 6.16041 6.29649 6.43629 6.54159 6.59087 6.79177 6.84373 6.92390 7.37569 7.52149 7.66625 7.76938 8.03021 8.17322 8.42650 9.18156 9.80881 10.36854 11.28561 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.022113 B = 0.003092 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.938504 B = 9052.331763 C = 9670.257571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.581 5.581 10 C 0.174 3.826 11 C -0.144 4.144 12 C 0.163 3.837 13 H 0.095 0.905 14 N -0.710 5.710 15 C 0.585 3.415 16 O -0.506 6.506 17 C -0.274 4.274 18 S 0.214 5.786 19 C 0.036 3.964 20 N -0.469 5.469 21 C 0.174 3.826 22 Cl 0.031 6.969 23 C 0.081 3.919 24 H 0.047 0.953 25 O -0.555 6.555 26 C 0.119 3.881 27 H 0.255 0.745 28 H 0.091 0.909 29 H 0.020 0.980 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.398 0.602 33 H 0.214 0.786 34 H 0.373 0.627 35 H 0.028 0.972 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.597 -18.310 10.800 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.303 5.303 10 C 0.048 3.952 11 C -0.184 4.184 12 C 0.060 3.940 13 H 0.113 0.887 14 N -0.361 5.361 15 C 0.368 3.632 16 O -0.382 6.382 17 C -0.401 4.401 18 S 0.467 5.533 19 C -0.259 4.259 20 N -0.184 5.184 21 C 0.009 3.991 22 Cl 0.060 6.940 23 C 0.020 3.980 24 H 0.064 0.936 25 O -0.360 6.360 26 C -0.009 4.009 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.232 0.768 33 H 0.230 0.770 34 H 0.220 0.780 35 H 0.046 0.954 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.782 -18.043 11.089 21.711 hybrid contribution 0.261 0.692 -0.306 0.800 sum 5.044 -17.351 10.784 21.042 Atomic orbital electron populations 1.70022 1.05261 1.25719 1.53481 1.25039 0.95273 0.98432 1.00792 0.86361 0.78901 0.83359 0.78059 1.20954 1.21647 1.21011 1.19069 0.92420 0.84730 1.41984 0.91817 1.43883 1.35470 1.00967 1.50019 1.20690 0.88434 0.98358 0.87723 1.22443 1.00848 0.94338 1.00813 1.21123 0.96711 0.89511 0.86670 0.88696 1.46105 1.08616 1.44335 1.37041 1.16568 0.85772 0.79796 0.81021 1.90914 1.21814 1.63288 1.62181 1.25904 0.96136 1.10002 1.08020 1.84112 1.06893 1.35761 1.26523 1.28566 0.91768 1.02256 1.03328 1.65670 1.13258 1.21042 1.18401 1.21151 0.90243 0.94631 0.93105 1.98455 1.06920 1.96217 1.92415 1.22642 0.86667 0.95891 0.92842 0.93568 1.86438 1.20359 1.89298 1.39948 1.21533 0.98771 0.88035 0.92547 0.93496 0.89095 0.96181 0.92817 0.91491 0.76784 0.76971 0.78004 0.95424 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.01 11.18 55.49 0.62 -25.39 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -6.72 9.58 -15.06 -0.14 -6.86 16 8 H 0.06 1.64 7.88 -52.49 -0.41 1.23 16 9 N -0.58 -14.02 2.94 -172.58 -0.51 -14.52 16 10 C 0.17 4.19 5.28 -3.94 -0.02 4.17 16 11 C -0.14 -2.91 5.49 -26.83 -0.15 -3.05 16 12 C 0.16 2.80 2.20 -67.89 -0.15 2.65 16 13 H 0.10 1.76 7.57 -51.93 -0.39 1.36 16 14 N -0.71 -10.34 5.05 -55.12 -0.28 -10.61 16 15 C 0.59 9.06 7.74 -12.92 -0.10 8.96 16 16 O -0.51 -9.45 14.83 5.18 0.08 -9.37 16 17 C -0.27 -3.49 6.52 -36.75 -0.24 -3.72 16 18 S 0.21 1.68 22.35 -107.50 -2.40 -0.73 16 19 C 0.04 0.27 12.20 51.72 0.63 0.90 16 20 N -0.47 -5.31 10.50 -12.22 -0.13 -5.44 16 21 C 0.17 2.30 7.41 -18.39 -0.14 2.16 16 22 Cl 0.03 0.44 27.38 -51.86 -1.42 -0.98 16 23 C 0.08 1.28 3.38 -26.61 -0.09 1.19 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 O -0.56 -8.52 12.09 -35.23 -0.43 -8.95 16 26 C 0.12 2.29 6.16 -3.71 -0.02 2.27 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.09 2.47 6.05 -51.93 -0.31 2.15 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.41 7.61 -51.93 -0.40 1.02 16 32 H 0.40 4.94 7.44 -40.82 -0.30 4.64 16 33 H 0.21 0.61 8.06 -52.48 -0.42 0.19 16 34 H 0.37 4.45 9.08 45.56 0.41 4.86 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 LS Contribution 330.63 15.07 4.98 4.98 Total: -1.00 -32.86 330.63 -8.08 -40.95 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -3.07 Total: 4.97 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -0.51 Total: 8.66 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.29 Total: -55.97 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.35 Total: -18.32 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.40 Total: -0.73 kcal Atomic # 17 Polarization: 0.44 SS G_CDS: -1.42 Total: -0.98 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.86 -8.08 -40.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090813841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.695 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.02 seconds