Wall clock time and date at job start Tue Mar 31 2020 17:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99953 * 2 1 4 4 H 1.48503 * 109.47110 * 240.00222 * 3 2 1 5 5 H 1.48499 * 109.47407 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47053 * 120.00229 * 3 2 1 7 7 C 1.38815 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00078 * 162.88704 * 7 2 1 9 9 N 1.36932 * 119.99520 * 343.16792 * 7 2 1 10 10 C 1.46921 * 120.63174 * 331.89167 * 9 7 2 11 11 C 1.52760 * 109.01057 * 233.58791 * 10 9 7 12 12 C 1.53042 * 109.38363 * 305.58794 * 11 10 9 13 13 H 1.08990 * 109.46139 * 301.21911 * 12 11 10 14 14 N 1.46501 * 109.45037 * 181.24937 * 12 11 10 15 15 C 1.34778 * 119.99637 * 84.93741 * 14 12 11 16 16 O 1.21710 * 120.00061 * 0.02562 * 15 14 12 17 17 C 1.46526 * 119.99760 * 180.02562 * 15 14 12 18 18 S 1.76203 * 126.18013 * 359.69240 * 17 15 14 19 19 C 1.70914 * 90.39043 * 179.97438 * 18 17 15 20 20 N 1.29362 * 110.62135 * 0.35233 * 19 18 17 21 21 C 1.31041 * 117.45227 * 359.72330 * 20 19 18 22 22 Cl 1.73598 * 123.05223 * 180.02562 * 21 20 19 23 23 C 1.53042 * 109.53704 * 61.24152 * 12 11 10 24 24 H 1.08993 * 109.49818 * 178.68428 * 23 12 11 25 25 O 1.42897 * 109.49820 * 58.58174 * 23 12 11 26 26 C 1.46925 * 120.62947 * 152.17927 * 9 7 2 27 27 H 0.97002 * 119.99648 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.59072 * 353.42541 * 10 9 7 29 29 H 1.09005 * 109.58908 * 113.84948 * 10 9 7 30 30 H 1.09005 * 109.56663 * 185.55611 * 11 10 9 31 31 H 1.09001 * 109.36328 * 65.50204 * 11 10 9 32 32 H 0.96996 * 120.00178 * 264.93959 * 14 12 11 33 33 H 1.08004 * 124.69040 * 180.02562 * 19 18 17 34 34 H 0.96705 * 114.00012 * 180.16053 * 25 23 12 35 35 H 1.09000 * 109.58924 * 246.15132 * 26 9 7 36 36 H 1.09000 * 109.58889 * 6.57469 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0545 -1.2230 -0.2747 9 7 1.3696 -2.3624 0.3445 10 6 0.2237 -2.3406 1.2637 11 6 0.4865 -3.3159 2.4098 12 6 0.8069 -4.6984 1.8369 13 1 -0.0290 -5.0415 1.2275 14 7 1.0299 -5.6418 2.9352 15 6 -0.0172 -6.2643 3.5119 16 8 -1.1480 -6.0430 3.1198 17 6 0.2058 -7.2076 4.6108 18 16 1.7655 -7.6529 5.2990 19 6 0.9915 -8.7024 6.4039 20 7 -0.2897 -8.6868 6.2259 21 6 -0.7592 -7.9071 5.2831 22 17 -2.4517 -7.7733 4.9206 23 6 2.0674 -4.6148 0.9729 24 1 2.3083 -5.6041 0.5842 25 8 3.1564 -4.1339 1.7633 26 6 1.8189 -3.6535 -0.1939 27 1 -0.4850 0.8401 0.0004 28 1 0.0952 -1.3349 1.6638 29 1 -0.6782 -2.6420 0.7308 30 1 -0.3978 -3.3809 3.0438 31 1 1.3321 -2.9614 2.9992 32 1 1.9311 -5.8185 3.2474 33 1 1.5020 -9.3002 7.1444 34 1 3.9890 -4.0533 1.2781 35 1 1.0499 -4.0642 -0.8482 36 1 2.7427 -3.5138 -0.7552 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090813841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:22 Heat of formation + Delta-G solvation = -37.876234 kcal Electronic energy + Delta-G solvation = -23959.731549 eV Core-core repulsion = 20210.745262 eV Total energy + Delta-G solvation = -3748.986287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.43687 -40.61205 -39.32795 -37.68182 -36.58523 -35.74624 -33.76728 -32.28347 -31.28883 -30.28205 -27.57621 -26.67137 -24.28518 -23.82479 -22.56134 -21.45013 -20.92995 -20.04063 -19.00090 -18.15321 -17.52529 -17.30022 -16.75693 -16.60057 -16.28711 -15.80049 -15.64920 -15.52598 -15.34752 -15.17858 -14.84205 -14.50488 -13.78701 -13.67003 -13.29265 -12.98899 -12.89514 -12.76331 -12.64973 -12.44507 -12.17927 -12.09545 -12.06451 -11.90600 -11.49499 -11.27876 -10.93281 -10.84227 -10.80998 -10.49383 -10.13028 -9.94596 -8.66296 -7.84980 -5.30013 -1.03521 -0.21359 0.27690 1.00996 1.15467 1.48254 1.51702 1.57752 1.87778 1.95794 2.52802 3.28218 3.32428 3.38870 3.63482 3.66666 3.79439 3.88612 4.04285 4.27095 4.37344 4.50128 4.70087 4.73673 4.88041 4.94509 5.00816 5.12715 5.37809 5.47523 5.64807 5.70288 6.17127 6.38242 6.39503 6.98761 7.04412 7.15789 7.85547 8.37781 9.21769 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.022113 B = 0.003092 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.938504 B = 9052.331763 C = 9670.257571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.056 4.056 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.300 1.300 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.075 0.925 9 N -0.598 5.598 10 C 0.184 3.816 11 C -0.126 4.126 12 C 0.169 3.831 13 H 0.079 0.921 14 N -0.698 5.698 15 C 0.585 3.415 16 O -0.548 6.548 17 C -0.317 4.317 18 S 0.294 5.706 19 C 0.057 3.943 20 N -0.500 5.500 21 C 0.169 3.831 22 Cl 0.006 6.994 23 C 0.100 3.900 24 H 0.089 0.911 25 O -0.563 6.563 26 C 0.111 3.889 27 H 0.248 0.752 28 H 0.053 0.947 29 H -0.008 1.008 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.411 0.589 33 H 0.263 0.737 34 H 0.392 0.608 35 H 0.023 0.977 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.171 -20.368 12.032 25.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.251 4.251 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.227 1.227 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.093 0.907 9 N -0.320 5.320 10 C 0.057 3.943 11 C -0.166 4.166 12 C 0.065 3.935 13 H 0.097 0.903 14 N -0.350 5.350 15 C 0.370 3.630 16 O -0.427 6.427 17 C -0.443 4.443 18 S 0.548 5.452 19 C -0.237 4.237 20 N -0.215 5.215 21 C 0.002 3.998 22 Cl 0.034 6.966 23 C 0.039 3.961 24 H 0.106 0.894 25 O -0.371 6.371 26 C -0.015 4.015 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.010 0.990 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.248 0.752 33 H 0.278 0.722 34 H 0.241 0.759 35 H 0.041 0.959 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.454 -20.145 12.328 25.086 hybrid contribution -0.731 1.222 -0.626 1.555 sum 7.723 -18.923 11.702 23.552 Atomic orbital electron populations 1.70198 1.06860 1.25780 1.55674 1.25829 0.95947 1.01699 1.01582 0.85338 0.77464 0.79227 0.78376 1.19761 1.22665 1.20502 1.19496 0.92977 0.85693 1.40260 0.90717 1.44078 1.35140 1.02313 1.50515 1.20360 0.87950 0.97253 0.88711 1.22136 1.00050 0.95538 0.98910 1.20813 0.97376 0.88043 0.87318 0.90254 1.45803 1.09271 1.43544 1.36354 1.16918 0.85120 0.79727 0.81225 1.90890 1.23423 1.64743 1.63632 1.25682 0.99375 1.10775 1.08457 1.83819 1.02671 1.34042 1.24620 1.29479 0.90679 1.00789 1.02742 1.65719 1.15154 1.21903 1.18755 1.21255 0.89416 0.95271 0.93855 1.98438 1.09128 1.96351 1.92660 1.22357 0.86224 0.96686 0.90868 0.89358 1.86402 1.21042 1.89370 1.40247 1.21810 0.99089 0.86501 0.94142 0.94333 0.92829 0.99010 0.93832 0.92046 0.75168 0.72160 0.75860 0.95864 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.41 11.18 21.65 0.24 -56.17 16 2 C -0.06 -3.09 4.92 84.86 0.42 -2.68 16 3 Si 0.97 44.65 29.59 68.60 2.03 46.67 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.25 -13.50 9.58 84.03 0.81 -12.69 16 8 H 0.08 3.74 7.88 -2.91 -0.02 3.71 16 9 N -0.60 -29.01 2.94 -699.93 -2.06 -31.07 16 10 C 0.18 9.25 5.28 86.22 0.45 9.70 16 11 C -0.13 -5.19 5.49 30.53 0.17 -5.02 16 12 C 0.17 5.69 2.20 45.02 0.10 5.79 16 13 H 0.08 2.97 7.57 -2.39 -0.02 2.95 16 14 N -0.70 -19.20 5.05 -446.51 -2.25 -21.46 16 15 C 0.58 17.82 7.74 86.40 0.67 18.49 16 16 O -0.55 -21.10 14.83 -4.38 -0.06 -21.16 16 17 C -0.32 -7.56 6.52 24.11 0.16 -7.40 16 18 S 0.29 3.42 22.35 -56.49 -1.26 2.16 16 19 C 0.06 0.59 12.20 130.61 1.59 2.18 16 20 N -0.50 -10.16 10.50 -192.57 -2.02 -12.19 16 21 C 0.17 4.32 7.41 84.48 0.63 4.94 16 22 Cl 0.01 0.17 27.38 -2.72 -0.07 0.09 16 23 C 0.10 2.89 3.38 30.67 0.10 2.99 16 24 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 25 O -0.56 -15.33 12.09 -148.98 -1.80 -17.13 16 26 C 0.11 4.12 6.16 86.36 0.53 4.65 16 27 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.05 3.08 6.05 -2.39 -0.01 3.06 16 29 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 30 H 0.04 1.84 8.14 -2.38 -0.02 1.83 16 31 H 0.06 2.58 7.61 -2.39 -0.02 2.57 16 32 H 0.41 8.95 7.44 -92.71 -0.69 8.26 16 33 H 0.26 -0.11 8.06 -2.91 -0.02 -0.14 16 34 H 0.39 7.68 9.08 -74.05 -0.67 7.00 16 35 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 2.64 7.93 -2.39 -0.02 2.62 16 Total: -1.00 -75.96 330.63 -1.84 -77.81 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -0.21 Total: 11.50 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 5.63 Total: 20.95 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -6.09 Total: -120.88 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -1.87 Total: -38.29 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.26 Total: 2.16 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -0.07 Total: 0.09 kcal Total: -75.96 -1.84 -77.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090813841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.930 kcal (2) G-P(sol) polarization free energy of solvation -75.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds