Wall clock time and date at job start Tue Mar 31 2020 17:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00371 * 2 1 4 4 H 1.48495 * 109.47305 * 272.93232 * 3 2 1 5 5 H 1.48507 * 109.46792 * 32.92985 * 3 2 1 6 6 H 1.48504 * 109.47529 * 152.92638 * 3 2 1 7 7 C 1.38818 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99925 * 339.37498 * 7 2 1 9 9 N 1.36938 * 119.99905 * 159.36666 * 7 2 1 10 10 C 1.46919 * 120.63504 * 332.61480 * 9 7 2 11 11 C 1.53193 * 108.77260 * 233.62754 * 10 9 7 12 12 C 1.53041 * 109.31374 * 305.36001 * 11 10 9 13 13 H 1.09000 * 109.44873 * 181.37774 * 12 11 10 14 14 N 1.46493 * 109.46166 * 301.34857 * 12 11 10 15 15 C 1.34776 * 120.00186 * 275.06541 * 14 12 11 16 16 O 1.21712 * 119.99989 * 0.02562 * 15 14 12 17 17 C 1.46520 * 120.00368 * 180.02562 * 15 14 12 18 18 S 1.76214 * 126.17751 * 359.97438 * 17 15 14 19 19 C 1.70919 * 90.39191 * 180.02562 * 18 17 15 20 20 N 1.29356 * 110.61677 * 359.97438 * 19 18 17 21 21 C 1.31038 * 117.45992 * 359.97438 * 20 19 18 22 22 Cl 1.73603 * 123.05954 * 179.97438 * 21 20 19 23 23 C 1.53045 * 109.53299 * 61.36801 * 12 11 10 24 24 H 1.09000 * 109.49483 * 58.62008 * 23 12 11 25 25 O 1.42902 * 109.49457 * 178.68374 * 23 12 11 26 26 C 1.46934 * 120.62268 * 152.63002 * 9 7 2 27 27 H 0.96994 * 119.99770 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.58461 * 353.41440 * 10 9 7 29 29 H 1.09002 * 109.58930 * 113.83892 * 10 9 7 30 30 H 1.09009 * 109.49541 * 185.41022 * 11 10 9 31 31 H 1.08999 * 109.50216 * 65.31875 * 11 10 9 32 32 H 0.97006 * 120.00200 * 95.06212 * 14 12 11 33 33 H 1.07997 * 124.69071 * 180.02562 * 19 18 17 34 34 H 0.96699 * 114.00213 * 180.02562 * 25 23 12 35 35 H 1.08995 * 109.58743 * 6.58646 * 26 9 7 36 36 H 1.08998 * 109.70204 * 246.22520 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4358 2.0822 -1.3982 5 1 1.4800 2.6339 0.7611 6 1 3.5774 1.4230 0.6372 7 6 2.0103 -1.2022 -0.0005 8 1 1.5222 -2.1077 0.3285 9 7 3.3138 -1.2400 -0.4185 10 6 3.8177 -0.2583 -1.3884 11 6 4.4622 -1.0078 -2.5588 12 6 5.5287 -1.9648 -2.0213 13 1 6.0057 -2.4814 -2.8542 14 7 6.5359 -1.2048 -1.2771 15 6 7.5645 -0.6291 -1.9305 16 8 7.6564 -0.7403 -3.1390 17 6 8.5723 0.1305 -1.1860 18 16 8.5987 0.3946 0.5560 19 6 10.0361 1.3075 0.4076 20 7 10.4082 1.3732 -0.8295 21 6 9.6635 0.7623 -1.7178 22 17 10.0264 0.7572 -3.4155 23 6 4.8746 -2.9903 -1.0925 24 1 4.1082 -3.5396 -1.6394 25 8 5.8660 -3.9021 -0.6153 26 6 4.2348 -2.2634 0.0945 27 1 -0.4849 0.8400 -0.0004 28 1 2.9913 0.3506 -1.7550 29 1 4.5605 0.3801 -0.9100 30 1 4.9249 -0.2921 -3.2385 31 1 3.6993 -1.5753 -3.0917 32 1 6.4625 -1.1158 -0.3139 33 1 10.5614 1.7653 1.2327 34 1 5.5214 -4.5818 -0.0200 35 1 3.6836 -2.9775 0.7063 36 1 5.0118 -1.7907 0.6953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090813842.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:39 Heat of formation + Delta-G solvation = -5.765395 kcal Electronic energy + Delta-G solvation = -24496.231796 eV Core-core repulsion = 20748.637939 eV Total energy + Delta-G solvation = -3747.593856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 7.09 seconds Orbital eigenvalues (eV) -40.46187 -39.69862 -38.04466 -36.70209 -35.73353 -34.30350 -32.14884 -31.17110 -30.13444 -29.22086 -26.50635 -25.37535 -22.87802 -22.72363 -21.76788 -20.35464 -19.44871 -19.09434 -17.44979 -17.09639 -16.58778 -16.20356 -15.67877 -15.36187 -15.11109 -14.89403 -14.69652 -14.36643 -14.07542 -13.92888 -13.56253 -12.70995 -12.59143 -12.44163 -12.42023 -11.93647 -11.91186 -11.65953 -11.33254 -11.25056 -11.17504 -10.40728 -10.38799 -10.17593 -10.06898 -9.96470 -9.85269 -9.80601 -9.60949 -9.19273 -8.94780 -8.70400 -7.15000 -6.07768 -3.46287 -0.19417 0.61458 1.01325 1.91024 2.01417 3.04412 3.06759 3.23836 3.38473 3.40540 4.04531 4.20924 4.40946 4.53798 4.75586 4.81090 5.08459 5.15330 5.19039 5.36460 5.46063 5.60899 5.68454 5.89807 6.09121 6.24542 6.26574 6.36555 6.50282 6.55401 6.71746 6.95749 7.46624 7.69551 7.83445 8.13393 8.18503 8.77160 9.56995 9.91312 11.07609 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.004336 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.936207 B = 6455.600460 C = 6951.086471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.029 3.971 3 Si 0.881 3.119 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.268 4.268 8 H 0.087 0.913 9 N -0.599 5.599 10 C 0.125 3.875 11 C -0.146 4.146 12 C 0.166 3.834 13 H 0.090 0.910 14 N -0.701 5.701 15 C 0.591 3.409 16 O -0.512 6.512 17 C -0.277 4.277 18 S 0.220 5.780 19 C 0.037 3.963 20 N -0.469 5.469 21 C 0.176 3.824 22 Cl 0.029 6.971 23 C 0.075 3.925 24 H 0.075 0.925 25 O -0.569 6.569 26 C 0.121 3.879 27 H 0.264 0.736 28 H 0.077 0.923 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.399 0.601 33 H 0.215 0.785 34 H 0.377 0.623 35 H 0.071 0.929 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.307 -1.292 1.833 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.171 4.171 3 Si 0.711 3.289 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.396 4.396 8 H 0.105 0.895 9 N -0.325 5.325 10 C -0.001 4.001 11 C -0.187 4.187 12 C 0.062 3.938 13 H 0.108 0.892 14 N -0.353 5.353 15 C 0.375 3.625 16 O -0.389 6.389 17 C -0.403 4.403 18 S 0.473 5.527 19 C -0.259 4.259 20 N -0.184 5.184 21 C 0.010 3.990 22 Cl 0.057 6.943 23 C 0.014 3.986 24 H 0.093 0.907 25 O -0.374 6.374 26 C -0.006 4.006 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.235 0.765 33 H 0.231 0.769 34 H 0.224 0.776 35 H 0.089 0.911 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 18.468 -0.907 1.233 18.532 hybrid contribution 0.302 0.883 -0.070 0.936 sum 18.770 -0.024 1.163 18.806 Atomic orbital electron populations 1.69820 1.05733 1.26765 1.52196 1.25250 0.95177 0.97563 0.99063 0.86998 0.79987 0.84746 0.77178 1.21505 1.22963 1.19603 1.18876 0.84647 0.94885 1.41152 0.89516 1.44276 1.08534 1.32952 1.46699 1.21364 0.97344 0.92059 0.89288 1.22437 0.97558 0.99238 0.99434 1.20919 0.87997 0.90808 0.94051 0.89174 1.45866 1.25005 1.53207 1.11191 1.16477 0.80253 0.79017 0.86767 1.90874 1.75537 1.60015 1.12470 1.25837 1.04092 1.12703 0.97646 1.84272 1.22585 1.44421 1.01401 1.28570 0.98643 1.01671 0.96974 1.65659 1.31225 1.20966 1.00573 1.21102 0.90941 0.96581 0.90366 1.98443 1.94156 1.96740 1.04920 1.22715 0.89597 0.89782 0.96458 0.90716 1.86478 1.37548 1.45103 1.68267 1.21567 0.92978 0.92539 0.93560 0.92567 0.90484 0.95646 0.91152 0.90073 0.76520 0.76903 0.77602 0.91060 0.95762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.97 55.49 0.78 -25.78 16 2 C 0.03 0.80 5.23 -17.43 -0.09 0.71 16 3 Si 0.88 21.44 24.34 -169.99 -4.14 17.30 16 4 H -0.29 -6.88 6.62 56.52 0.37 -6.51 16 5 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.27 -6.36 6.63 56.52 0.37 -5.98 16 7 C -0.27 -6.96 10.04 -15.06 -0.15 -7.11 16 8 H 0.09 2.40 8.06 -52.49 -0.42 1.97 16 9 N -0.60 -12.92 2.77 -172.32 -0.48 -13.40 16 10 C 0.12 2.57 3.94 -3.71 -0.01 2.56 16 11 C -0.15 -2.56 5.77 -26.61 -0.15 -2.72 16 12 C 0.17 2.66 2.47 -67.89 -0.17 2.49 16 13 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 14 N -0.70 -10.73 4.15 -55.12 -0.23 -10.95 16 15 C 0.59 9.43 7.74 -12.92 -0.10 9.33 16 16 O -0.51 -9.32 14.83 5.18 0.08 -9.24 16 17 C -0.28 -3.81 6.52 -36.75 -0.24 -4.05 16 18 S 0.22 2.12 22.35 -107.50 -2.40 -0.28 16 19 C 0.04 0.31 12.20 51.72 0.63 0.95 16 20 N -0.47 -5.71 10.50 -12.22 -0.13 -5.84 16 21 C 0.18 2.44 7.41 -18.40 -0.14 2.31 16 22 Cl 0.03 0.41 27.38 -51.86 -1.42 -1.01 16 23 C 0.08 1.12 3.36 -26.61 -0.09 1.03 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 25 O -0.57 -7.41 13.21 -35.23 -0.47 -7.88 16 26 C 0.12 2.05 5.84 -3.71 -0.02 2.03 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 28 H 0.08 1.78 4.49 -51.93 -0.23 1.54 16 29 H 0.03 0.53 6.67 -51.93 -0.35 0.18 16 30 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 31 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.40 5.72 6.05 -40.82 -0.25 5.47 16 33 H 0.21 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.38 3.35 9.08 45.56 0.41 3.76 16 35 H 0.07 1.18 7.93 -51.93 -0.41 0.76 16 36 H 0.02 0.40 6.64 -51.93 -0.35 0.05 16 LS Contribution 321.70 15.07 4.85 4.85 Total: -1.00 -32.49 321.70 -6.96 -39.45 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -2.87 Total: 5.25 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -0.53 Total: 7.54 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.06 Total: -55.97 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.39 Total: -17.12 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.14 Total: 17.30 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.40 Total: -0.28 kcal Atomic # 17 Polarization: 0.41 SS G_CDS: -1.42 Total: -1.01 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.49 -6.96 -39.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090813842.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.681 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.09 seconds