Wall clock time and date at job start Tue Mar 31 2020 17:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00371 * 2 1 4 4 H 1.48495 * 109.47305 * 272.93232 * 3 2 1 5 5 H 1.48507 * 109.46792 * 32.92985 * 3 2 1 6 6 H 1.48504 * 109.47529 * 152.92638 * 3 2 1 7 7 C 1.38818 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99925 * 339.37498 * 7 2 1 9 9 N 1.36938 * 119.99905 * 159.36666 * 7 2 1 10 10 C 1.46919 * 120.63504 * 332.61480 * 9 7 2 11 11 C 1.53193 * 108.77260 * 233.62754 * 10 9 7 12 12 C 1.53041 * 109.31374 * 305.36001 * 11 10 9 13 13 H 1.09000 * 109.44873 * 181.37774 * 12 11 10 14 14 N 1.46493 * 109.46166 * 301.34857 * 12 11 10 15 15 C 1.34776 * 120.00186 * 275.06541 * 14 12 11 16 16 O 1.21712 * 119.99989 * 0.02562 * 15 14 12 17 17 C 1.46520 * 120.00368 * 180.02562 * 15 14 12 18 18 S 1.76214 * 126.17751 * 359.97438 * 17 15 14 19 19 C 1.70919 * 90.39191 * 180.02562 * 18 17 15 20 20 N 1.29356 * 110.61677 * 359.97438 * 19 18 17 21 21 C 1.31038 * 117.45992 * 359.97438 * 20 19 18 22 22 Cl 1.73603 * 123.05954 * 179.97438 * 21 20 19 23 23 C 1.53045 * 109.53299 * 61.36801 * 12 11 10 24 24 H 1.09000 * 109.49483 * 58.62008 * 23 12 11 25 25 O 1.42902 * 109.49457 * 178.68374 * 23 12 11 26 26 C 1.46934 * 120.62268 * 152.63002 * 9 7 2 27 27 H 0.96994 * 119.99770 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.58461 * 353.41440 * 10 9 7 29 29 H 1.09002 * 109.58930 * 113.83892 * 10 9 7 30 30 H 1.09009 * 109.49541 * 185.41022 * 11 10 9 31 31 H 1.08999 * 109.50216 * 65.31875 * 11 10 9 32 32 H 0.97006 * 120.00200 * 95.06212 * 14 12 11 33 33 H 1.07997 * 124.69071 * 180.02562 * 19 18 17 34 34 H 0.96699 * 114.00213 * 180.02562 * 25 23 12 35 35 H 1.08995 * 109.58743 * 6.58646 * 26 9 7 36 36 H 1.08998 * 109.70204 * 246.22520 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4358 2.0822 -1.3982 5 1 1.4800 2.6339 0.7611 6 1 3.5774 1.4230 0.6372 7 6 2.0103 -1.2022 -0.0005 8 1 1.5222 -2.1077 0.3285 9 7 3.3138 -1.2400 -0.4185 10 6 3.8177 -0.2583 -1.3884 11 6 4.4622 -1.0078 -2.5588 12 6 5.5287 -1.9648 -2.0213 13 1 6.0057 -2.4814 -2.8542 14 7 6.5359 -1.2048 -1.2771 15 6 7.5645 -0.6291 -1.9305 16 8 7.6564 -0.7403 -3.1390 17 6 8.5723 0.1305 -1.1860 18 16 8.5987 0.3946 0.5560 19 6 10.0361 1.3075 0.4076 20 7 10.4082 1.3732 -0.8295 21 6 9.6635 0.7623 -1.7178 22 17 10.0264 0.7572 -3.4155 23 6 4.8746 -2.9903 -1.0925 24 1 4.1082 -3.5396 -1.6394 25 8 5.8660 -3.9021 -0.6153 26 6 4.2348 -2.2634 0.0945 27 1 -0.4849 0.8400 -0.0004 28 1 2.9913 0.3506 -1.7550 29 1 4.5605 0.3801 -0.9100 30 1 4.9249 -0.2921 -3.2385 31 1 3.6993 -1.5753 -3.0917 32 1 6.4625 -1.1158 -0.3139 33 1 10.5614 1.7653 1.2327 34 1 5.5214 -4.5818 -0.0200 35 1 3.6836 -2.9775 0.7063 36 1 5.0118 -1.7907 0.6953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090813842.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:34 Heat of formation + Delta-G solvation = -32.478089 kcal Electronic energy + Delta-G solvation = -24497.390145 eV Core-core repulsion = 20748.637939 eV Total energy + Delta-G solvation = -3748.752206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.57277 -40.76325 -39.32768 -37.70571 -37.08103 -35.71469 -33.89612 -32.55694 -31.38027 -30.57403 -27.55951 -26.91079 -24.27775 -24.09734 -23.22010 -21.31621 -20.67114 -20.24827 -18.95887 -18.17274 -17.98885 -17.49373 -17.00717 -16.73770 -16.28776 -16.09361 -15.77306 -15.67382 -15.52802 -15.07202 -14.98140 -14.40834 -14.09782 -13.88758 -13.44475 -13.31169 -13.19410 -13.00092 -12.91417 -12.79920 -12.20348 -12.16445 -11.86111 -11.61062 -11.41263 -11.35289 -11.18468 -10.92998 -10.85166 -10.67593 -10.21833 -9.99632 -8.97103 -8.17469 -5.50716 -1.06360 -0.25102 0.23995 0.97502 1.12413 1.30613 1.39693 1.47794 1.90181 1.92356 2.40428 2.92454 3.12021 3.28182 3.36379 3.64941 3.70384 3.84744 3.96925 4.11057 4.21956 4.29858 4.46895 4.48475 4.70342 4.84482 4.84976 4.90784 5.05146 5.15694 5.36260 5.83588 6.11615 6.12543 6.31205 6.80876 6.92590 6.97501 7.58270 7.97188 9.01687 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.004336 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.936207 B = 6455.600460 C = 6951.086471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.027 4.027 3 Si 0.935 3.065 4 H -0.285 1.285 5 H -0.312 1.312 6 H -0.252 1.252 7 C -0.247 4.247 8 H 0.062 0.938 9 N -0.609 5.609 10 C 0.125 3.875 11 C -0.137 4.137 12 C 0.169 3.831 13 H 0.088 0.912 14 N -0.698 5.698 15 C 0.590 3.410 16 O -0.543 6.543 17 C -0.316 4.316 18 S 0.268 5.732 19 C 0.062 3.938 20 N -0.497 5.497 21 C 0.171 3.829 22 Cl 0.012 6.988 23 C 0.094 3.906 24 H 0.074 0.926 25 O -0.568 6.568 26 C 0.118 3.882 27 H 0.261 0.739 28 H 0.051 0.949 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.404 0.596 33 H 0.263 0.737 34 H 0.398 0.602 35 H 0.076 0.924 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.831 -1.229 3.468 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.222 4.222 3 Si 0.764 3.236 4 H -0.213 1.213 5 H -0.241 1.241 6 H -0.176 1.176 7 C -0.376 4.376 8 H 0.080 0.920 9 N -0.335 5.335 10 C 0.000 4.000 11 C -0.177 4.177 12 C 0.064 3.936 13 H 0.106 0.894 14 N -0.350 5.350 15 C 0.375 3.625 16 O -0.422 6.422 17 C -0.442 4.442 18 S 0.523 5.477 19 C -0.232 4.232 20 N -0.212 5.212 21 C 0.005 3.995 22 Cl 0.040 6.960 23 C 0.033 3.967 24 H 0.092 0.908 25 O -0.376 6.376 26 C -0.007 4.007 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.241 0.759 33 H 0.278 0.722 34 H 0.248 0.752 35 H 0.095 0.905 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 21.043 -0.881 2.908 21.261 hybrid contribution -0.403 0.769 -0.474 0.990 sum 20.640 -0.111 2.433 20.783 Atomic orbital electron populations 1.69943 1.07353 1.27160 1.55394 1.25804 0.95641 1.00580 1.00224 0.86110 0.79365 0.81006 0.77114 1.21292 1.24107 1.17626 1.18855 0.86375 0.93692 1.38681 0.92000 1.44317 1.07847 1.34041 1.47295 1.21314 0.96553 0.92069 0.90083 1.22298 0.97884 0.99346 0.98214 1.20799 0.87603 0.90689 0.94460 0.89429 1.45789 1.24737 1.53100 1.11328 1.16758 0.80450 0.78671 0.86597 1.90848 1.76324 1.61167 1.13896 1.25695 1.04073 1.14062 1.00346 1.84088 1.22426 1.43617 0.97566 1.29453 0.97675 0.99230 0.96869 1.65716 1.31763 1.22132 1.01578 1.21235 0.91311 0.96847 0.90135 1.98429 1.94246 1.96797 1.06520 1.22330 0.89583 0.89685 0.95145 0.90841 1.86457 1.36898 1.45337 1.68877 1.21761 0.92650 0.91688 0.94637 0.92981 0.93128 0.94972 0.91097 0.90164 0.75896 0.72162 0.75197 0.90528 0.93947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.45 13.97 21.65 0.30 -57.14 16 2 C -0.03 -1.50 5.23 84.86 0.44 -1.05 16 3 Si 0.93 44.27 24.34 68.60 1.67 45.94 16 4 H -0.29 -13.29 6.62 99.48 0.66 -12.63 16 5 H -0.31 -15.19 7.11 99.48 0.71 -14.49 16 6 H -0.25 -11.00 6.63 99.48 0.66 -10.34 16 7 C -0.25 -12.81 10.04 84.03 0.84 -11.97 16 8 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 9 N -0.61 -25.41 2.77 -699.09 -1.94 -27.35 16 10 C 0.12 4.98 3.94 86.36 0.34 5.32 16 11 C -0.14 -4.66 5.77 30.67 0.18 -4.48 16 12 C 0.17 5.10 2.47 45.02 0.11 5.21 16 13 H 0.09 2.75 7.58 -2.39 -0.02 2.74 16 14 N -0.70 -19.86 4.15 -446.52 -1.85 -21.71 16 15 C 0.59 18.02 7.74 86.40 0.67 18.69 16 16 O -0.54 -19.55 14.83 -4.39 -0.07 -19.61 16 17 C -0.32 -8.07 6.52 24.10 0.16 -7.91 16 18 S 0.27 4.19 22.35 -56.49 -1.26 2.93 16 19 C 0.06 0.80 12.20 130.61 1.59 2.39 16 20 N -0.50 -10.78 10.50 -192.57 -2.02 -12.80 16 21 C 0.17 4.52 7.41 84.48 0.63 5.14 16 22 Cl 0.01 0.33 27.38 -2.72 -0.07 0.25 16 23 C 0.09 2.57 3.36 30.67 0.10 2.67 16 24 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 25 O -0.57 -12.94 13.21 -148.98 -1.97 -14.91 16 26 C 0.12 3.73 5.84 86.36 0.50 4.24 16 27 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.05 2.30 4.49 -2.38 -0.01 2.29 16 29 H 0.03 1.25 6.67 -2.39 -0.02 1.23 16 30 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.40 10.38 6.05 -92.70 -0.56 9.82 16 33 H 0.26 0.57 8.06 -2.91 -0.02 0.55 16 34 H 0.40 5.61 9.08 -74.06 -0.67 4.93 16 35 H 0.08 2.34 7.93 -2.39 -0.02 2.33 16 36 H 0.04 1.23 6.64 -2.39 -0.02 1.21 16 Total: -1.00 -71.81 321.70 -1.80 -73.61 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -0.16 Total: 12.55 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 5.57 Total: 18.24 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -5.51 Total: -119.00 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -2.03 Total: -34.52 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.67 Total: 45.94 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.26 Total: 2.93 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -0.07 Total: 0.25 kcal Total: -71.81 -1.80 -73.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090813842.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.132 kcal (2) G-P(sol) polarization free energy of solvation -71.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds