Wall clock time and date at job start Tue Mar 31 2020 16:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48500 * 109.46613 * 239.99549 * 3 2 1 5 5 H 1.48499 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47342 * 119.99658 * 3 2 1 7 7 C 1.38814 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99847 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99770 * 180.02562 * 9 7 2 11 11 C 1.53785 * 113.61506 * 155.00093 * 10 9 7 12 12 C 1.53779 * 87.08384 * 89.11216 * 11 10 9 13 13 C 1.52994 * 113.61589 * 139.97992 * 12 11 10 14 14 N 1.46502 * 109.47545 * 176.53081 * 13 12 11 15 15 C 1.34773 * 120.00591 * 180.02562 * 14 13 12 16 16 O 1.21719 * 119.99731 * 359.97438 * 15 14 13 17 17 C 1.46545 * 120.00257 * 179.97438 * 15 14 13 18 18 C 1.37955 * 126.22117 * 179.97438 * 17 15 14 19 19 C 1.39796 * 107.12496 * 179.97438 * 18 17 15 20 20 Cl 1.73601 * 126.05940 * 179.97438 * 19 18 17 21 21 C 1.35721 * 107.87696 * 0.02562 * 19 18 17 22 22 Cl 1.73599 * 125.58240 * 179.97438 * 21 19 18 23 23 N 1.35667 * 108.82942 * 0.26039 * 21 19 18 24 24 H 0.96995 * 125.69078 * 179.73883 * 23 21 19 25 25 C 1.53780 * 87.17232 * 25.39178 * 12 11 10 26 26 H 0.97001 * 120.00077 * 0.02562 * 1 2 3 27 27 H 0.97005 * 120.00060 * 359.97438 * 9 7 2 28 28 H 1.08998 * 112.85186 * 23.79884 * 10 9 7 29 29 H 1.09007 * 113.61245 * 334.56412 * 11 10 9 30 30 H 1.09000 * 113.61503 * 203.66083 * 11 10 9 31 31 H 1.09003 * 113.61391 * 270.80171 * 12 11 10 32 32 H 1.09006 * 109.47244 * 56.53297 * 13 12 11 33 33 H 1.08998 * 109.47160 * 296.52990 * 13 12 11 34 34 H 0.97004 * 119.99308 * 359.97438 * 14 13 12 35 35 H 1.08001 * 126.43486 * 359.93075 * 18 17 15 36 36 H 1.08998 * 113.61947 * 89.15792 * 25 12 11 37 37 H 1.09002 * 113.61394 * 220.06205 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.2598 -4.8285 0.5971 12 6 0.7212 -5.0795 -0.8213 13 6 0.6206 -6.5621 -1.1853 14 7 0.0231 -6.6989 -2.5159 15 6 -0.1653 -7.9229 -3.0475 16 8 0.1615 -8.9148 -2.4223 17 6 -0.7636 -8.0597 -4.3783 18 6 -1.0132 -9.2430 -5.0421 19 6 -1.5873 -8.9114 -6.2729 20 17 -2.0945 -10.0311 -7.4987 21 6 -1.6767 -7.5588 -6.3399 22 17 -2.3218 -6.6540 -7.6736 23 7 -1.1735 -7.0295 -5.1966 24 1 -1.1148 -6.0839 -4.9887 25 6 1.9989 -4.4021 -1.3442 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3880 0.0005 28 1 3.0654 -3.5636 0.4077 29 1 0.4929 -4.5184 1.3069 30 1 1.8864 -5.6362 0.9754 31 1 -0.1902 -4.5255 -1.0465 32 1 -0.0028 -7.0747 -0.4526 33 1 1.6170 -7.0041 -1.1873 34 1 -0.2377 -5.9084 -3.0140 35 1 -0.8038 -10.2385 -4.6794 36 1 2.8279 -5.0929 -1.4976 37 1 1.8278 -3.7482 -2.1993 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091168362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:25 Heat of formation + Delta-G solvation = 24.135714 kcal Electronic energy + Delta-G solvation = -22444.240148 eV Core-core repulsion = 18695.899194 eV Total energy + Delta-G solvation = -3748.340953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.92322 -39.62766 -38.50481 -37.24803 -36.83219 -34.93456 -33.33358 -31.63096 -30.50786 -29.66785 -27.33679 -25.17208 -24.00498 -23.10887 -21.87755 -21.20775 -20.79435 -19.60259 -18.36669 -17.38814 -16.65867 -16.16729 -15.98267 -15.23956 -15.12631 -14.88149 -14.52978 -14.22222 -14.00698 -13.75823 -13.68037 -13.37293 -12.96577 -12.42050 -12.32992 -12.19266 -12.02710 -11.84916 -11.52195 -11.28657 -11.13148 -10.90126 -10.63041 -10.50877 -10.26748 -9.99779 -9.77478 -9.61472 -9.48392 -9.27079 -8.96554 -8.67456 -7.08885 -5.88565 -3.17942 0.77807 1.01316 1.70137 1.78683 2.67419 2.95553 2.97104 3.36862 3.41831 3.42438 4.34564 4.44276 4.48820 4.86946 4.91584 4.98627 5.11104 5.18577 5.36783 5.48059 5.57447 5.71286 5.76035 5.83082 5.94249 5.97512 6.11023 6.16706 6.27128 6.45032 6.47892 6.62825 6.77861 6.93392 7.19188 7.61290 7.84858 8.30565 9.41338 9.98051 10.32133 11.33701 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.002268 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.519206 B =12340.062574 C =13825.085105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 C -0.147 4.147 12 C -0.122 4.122 13 C 0.131 3.869 14 N -0.720 5.720 15 C 0.588 3.412 16 O -0.522 6.522 17 C -0.015 4.015 18 C -0.087 4.087 19 C -0.100 4.100 20 Cl -0.028 7.028 21 C 0.099 3.901 22 Cl 0.006 6.994 23 N -0.521 5.521 24 H 0.430 0.570 25 C -0.170 4.170 26 H 0.257 0.743 27 H 0.385 0.615 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.397 0.603 35 H 0.168 0.832 36 H 0.068 0.932 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.275 -17.975 -13.235 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.140 4.140 13 C 0.009 3.991 14 N -0.370 5.370 15 C 0.373 3.627 16 O -0.398 6.398 17 C -0.129 4.129 18 C -0.114 4.114 19 C -0.135 4.135 20 Cl 0.001 6.999 21 C -0.045 4.045 22 Cl 0.035 6.965 23 N -0.122 5.122 24 H 0.270 0.730 25 C -0.211 4.211 26 H 0.067 0.933 27 H 0.219 0.781 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.230 0.770 35 H 0.186 0.814 36 H 0.087 0.913 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.986 -18.348 -12.877 22.768 hybrid contribution -0.209 1.874 -0.580 1.973 sum -4.195 -16.475 -13.457 21.682 Atomic orbital electron populations 1.69646 1.05155 1.25985 1.57308 1.24769 0.95549 0.97832 1.02654 0.86242 0.78537 0.83303 0.77941 1.21204 1.21649 1.21127 1.19242 0.91109 0.83953 1.43235 0.91017 1.42163 1.05651 0.99441 1.87143 1.21087 0.95189 0.85583 0.92623 1.23443 1.00531 0.99758 0.94922 1.22734 0.99638 0.92681 0.98972 1.21585 0.98314 0.97410 0.81841 1.45968 1.63467 1.07251 1.20349 1.16813 0.78578 0.84011 0.83269 1.90886 1.51049 1.37247 1.60640 1.20525 1.11077 0.87026 0.94228 1.21150 1.00423 0.98369 0.91437 1.19613 1.11215 0.88002 0.94659 1.98355 1.89744 1.59721 1.52124 1.20616 1.06650 0.90085 0.87179 1.98442 1.83785 1.74236 1.40054 1.41942 1.47494 1.09822 1.12960 0.73015 1.23936 0.95620 0.99663 1.01845 0.93343 0.78142 0.91860 0.91213 0.90316 0.88915 0.91267 0.91016 0.76953 0.81408 0.91294 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.08 13.06 55.49 0.72 -26.35 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.50 9.97 -15.06 -0.15 -6.65 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.71 -16.60 5.31 -52.55 -0.28 -16.88 16 10 C 0.17 3.07 4.57 -67.02 -0.31 2.76 16 11 C -0.15 -2.17 7.39 -25.92 -0.19 -2.36 16 12 C -0.12 -1.62 3.62 -89.81 -0.33 -1.95 16 13 C 0.13 1.54 5.50 -4.04 -0.02 1.52 16 14 N -0.72 -7.55 5.55 -61.66 -0.34 -7.89 16 15 C 0.59 6.94 7.78 -12.91 -0.10 6.84 16 16 O -0.52 -7.89 16.88 5.17 0.09 -7.80 16 17 C -0.01 -0.15 7.06 -81.94 -0.58 -0.72 16 18 C -0.09 -0.87 10.64 -39.10 -0.42 -1.28 16 19 C -0.10 -0.96 6.66 -39.90 -0.27 -1.22 16 20 Cl -0.03 -0.25 29.12 -51.86 -1.51 -1.76 16 21 C 0.10 0.88 7.75 -16.76 -0.13 0.75 16 22 Cl 0.01 0.05 29.13 -51.86 -1.51 -1.46 16 23 N -0.52 -4.17 6.01 -6.51 -0.04 -4.21 16 24 H 0.43 2.46 8.19 -40.82 -0.33 2.12 16 25 C -0.17 -2.57 7.44 -25.83 -0.19 -2.77 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.38 9.57 7.90 -40.82 -0.32 9.24 16 28 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 29 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 30 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.87 7.87 -51.93 -0.41 0.46 16 34 H 0.40 3.38 7.60 -40.82 -0.31 3.07 16 35 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.07 0.94 7.92 -51.93 -0.41 0.53 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -30.53 352.25 -9.65 -40.18 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.29 Total: 9.74 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.77 Total: -5.50 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.06 Total: -55.33 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.09 Total: -7.80 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -3.02 Total: -3.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.53 -9.65 -40.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091168362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.316 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds