Wall clock time and date at job start Tue Mar 31 2020 16:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48500 * 109.46613 * 239.99549 * 3 2 1 5 5 H 1.48499 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47342 * 119.99658 * 3 2 1 7 7 C 1.38814 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99847 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99770 * 180.02562 * 9 7 2 11 11 C 1.53785 * 113.61506 * 155.00093 * 10 9 7 12 12 C 1.53779 * 87.08384 * 89.11216 * 11 10 9 13 13 C 1.52994 * 113.61589 * 139.97992 * 12 11 10 14 14 N 1.46502 * 109.47545 * 176.53081 * 13 12 11 15 15 C 1.34773 * 120.00591 * 180.02562 * 14 13 12 16 16 O 1.21719 * 119.99731 * 359.97438 * 15 14 13 17 17 C 1.46545 * 120.00257 * 179.97438 * 15 14 13 18 18 C 1.37955 * 126.22117 * 179.97438 * 17 15 14 19 19 C 1.39796 * 107.12496 * 179.97438 * 18 17 15 20 20 Cl 1.73601 * 126.05940 * 179.97438 * 19 18 17 21 21 C 1.35721 * 107.87696 * 0.02562 * 19 18 17 22 22 Cl 1.73599 * 125.58240 * 179.97438 * 21 19 18 23 23 N 1.35667 * 108.82942 * 0.26039 * 21 19 18 24 24 H 0.96995 * 125.69078 * 179.73883 * 23 21 19 25 25 C 1.53780 * 87.17232 * 25.39178 * 12 11 10 26 26 H 0.97001 * 120.00077 * 0.02562 * 1 2 3 27 27 H 0.97005 * 120.00060 * 359.97438 * 9 7 2 28 28 H 1.08998 * 112.85186 * 23.79884 * 10 9 7 29 29 H 1.09007 * 113.61245 * 334.56412 * 11 10 9 30 30 H 1.09000 * 113.61503 * 203.66083 * 11 10 9 31 31 H 1.09003 * 113.61391 * 270.80171 * 12 11 10 32 32 H 1.09006 * 109.47244 * 56.53297 * 13 12 11 33 33 H 1.08998 * 109.47160 * 296.52990 * 13 12 11 34 34 H 0.97004 * 119.99308 * 359.97438 * 14 13 12 35 35 H 1.08001 * 126.43486 * 359.93075 * 18 17 15 36 36 H 1.08998 * 113.61947 * 89.15792 * 25 12 11 37 37 H 1.09002 * 113.61394 * 220.06205 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.2598 -4.8285 0.5971 12 6 0.7212 -5.0795 -0.8213 13 6 0.6206 -6.5621 -1.1853 14 7 0.0231 -6.6989 -2.5159 15 6 -0.1653 -7.9229 -3.0475 16 8 0.1615 -8.9148 -2.4223 17 6 -0.7636 -8.0597 -4.3783 18 6 -1.0132 -9.2430 -5.0421 19 6 -1.5873 -8.9114 -6.2729 20 17 -2.0945 -10.0311 -7.4987 21 6 -1.6767 -7.5588 -6.3399 22 17 -2.3218 -6.6540 -7.6736 23 7 -1.1735 -7.0295 -5.1966 24 1 -1.1148 -6.0839 -4.9887 25 6 1.9989 -4.4021 -1.3442 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3880 0.0005 28 1 3.0654 -3.5636 0.4077 29 1 0.4929 -4.5184 1.3069 30 1 1.8864 -5.6362 0.9754 31 1 -0.1902 -4.5255 -1.0465 32 1 -0.0028 -7.0747 -0.4526 33 1 1.6170 -7.0041 -1.1873 34 1 -0.2377 -5.9084 -3.0140 35 1 -0.8038 -10.2385 -4.6794 36 1 2.8279 -5.0929 -1.4976 37 1 1.8278 -3.7482 -2.1993 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091168362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:24 Heat of formation + Delta-G solvation = 4.397109 kcal Electronic energy + Delta-G solvation = -22445.096078 eV Core-core repulsion = 18695.899194 eV Total energy + Delta-G solvation = -3749.196884 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.67113 -40.66671 -39.71325 -37.93008 -37.53585 -36.12548 -35.03787 -32.43236 -32.07946 -30.70342 -28.48684 -26.43449 -25.76484 -24.18381 -23.00969 -21.96996 -21.58729 -20.55952 -19.62894 -19.27680 -17.51143 -17.19801 -16.82990 -16.66962 -16.06998 -15.91843 -15.69487 -15.62337 -15.11001 -14.79198 -14.62857 -14.57213 -14.43024 -13.75846 -13.29151 -13.02036 -12.97165 -12.92599 -12.86603 -12.62980 -12.51198 -12.20885 -12.08451 -12.00438 -11.67933 -11.48684 -11.28304 -10.93934 -10.79743 -10.29183 -10.15510 -9.41468 -8.99920 -7.96125 -5.23879 -0.00217 0.30878 1.00048 1.03100 1.47958 1.49711 1.55843 1.87161 2.09667 2.18878 2.55297 3.36644 3.57297 3.68566 3.73118 3.77934 3.88089 4.13439 4.20302 4.32937 4.39389 4.44708 4.72400 4.75917 4.94506 4.99394 5.00451 5.09286 5.16633 5.23836 5.34658 5.44383 5.53374 5.66274 5.82466 6.27786 6.34068 6.95633 7.33134 8.10719 8.32555 9.26799 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.002268 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.519206 B =12340.062574 C =13825.085105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.142 3.858 11 C -0.134 4.134 12 C -0.103 4.103 13 C 0.140 3.860 14 N -0.712 5.712 15 C 0.592 3.408 16 O -0.558 6.558 17 C -0.022 4.022 18 C -0.091 4.091 19 C -0.111 4.111 20 Cl -0.024 7.024 21 C 0.104 3.896 22 Cl 0.016 6.984 23 N -0.509 5.509 24 H 0.440 0.560 25 C -0.154 4.154 26 H 0.251 0.749 27 H 0.375 0.625 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.407 0.593 35 H 0.171 0.829 36 H 0.092 0.908 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.667 -18.659 -13.930 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.799 3.201 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.032 3.968 11 C -0.173 4.173 12 C -0.122 4.122 13 C 0.017 3.983 14 N -0.363 5.363 15 C 0.379 3.621 16 O -0.436 6.436 17 C -0.137 4.137 18 C -0.117 4.117 19 C -0.146 4.146 20 Cl 0.004 6.996 21 C -0.042 4.042 22 Cl 0.045 6.955 23 N -0.111 5.111 24 H 0.283 0.717 25 C -0.194 4.194 26 H 0.060 0.940 27 H 0.207 0.793 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.243 0.757 35 H 0.189 0.811 36 H 0.111 0.889 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.341 -19.041 -13.582 23.626 hybrid contribution -0.368 2.018 -0.396 2.089 sum -3.709 -17.023 -13.978 22.337 Atomic orbital electron populations 1.69791 1.06488 1.26116 1.59495 1.25516 0.96357 1.00949 1.03812 0.85261 0.77230 0.79406 0.78162 1.20443 1.22328 1.20523 1.19619 0.91494 0.85228 1.41064 0.90649 1.42287 1.05313 1.00526 1.87634 1.21437 0.95064 0.84928 0.95388 1.23347 0.99973 0.98650 0.95376 1.22503 0.98383 0.93602 0.97663 1.21417 0.98718 0.95754 0.82430 1.45854 1.62934 1.07472 1.19998 1.16911 0.78000 0.83643 0.83534 1.90869 1.52733 1.38336 1.61706 1.20208 1.11996 0.87592 0.93865 1.21285 1.00166 0.98666 0.91604 1.19692 1.11656 0.88432 0.94793 1.98354 1.89705 1.59647 1.51868 1.20698 1.05979 0.90134 0.87400 1.98451 1.83586 1.73945 1.39534 1.41867 1.46730 1.10139 1.12356 0.71742 1.23748 0.97354 0.99226 0.99084 0.94034 0.79324 0.92342 0.92377 0.87492 0.89882 0.91093 0.90629 0.75727 0.81112 0.88937 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.10 13.06 21.65 0.28 -56.82 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.97 44.67 29.55 68.60 2.03 46.70 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.24 -12.88 9.97 84.04 0.84 -12.04 16 8 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 9 N -0.72 -33.94 5.31 -320.16 -1.70 -35.63 16 10 C 0.14 5.05 4.57 45.58 0.21 5.26 16 11 C -0.13 -3.72 7.39 31.12 0.23 -3.49 16 12 C -0.10 -2.56 3.62 -10.27 -0.04 -2.59 16 13 C 0.14 2.96 5.50 86.38 0.47 3.43 16 14 N -0.71 -13.57 5.55 -467.20 -2.59 -16.16 16 15 C 0.59 13.14 7.78 86.41 0.67 13.81 16 16 O -0.56 -16.25 16.88 -4.41 -0.07 -16.32 16 17 C -0.02 -0.42 7.06 40.30 0.28 -0.13 16 18 C -0.09 -1.70 10.64 22.58 0.24 -1.46 16 19 C -0.11 -1.98 6.66 22.06 0.15 -1.83 16 20 Cl -0.02 -0.41 29.12 -2.72 -0.08 -0.48 16 21 C 0.10 1.67 7.75 83.52 0.65 2.32 16 22 Cl 0.02 0.23 29.13 -2.72 -0.08 0.16 16 23 N -0.51 -7.30 6.01 -174.51 -1.05 -8.35 16 24 H 0.44 4.20 8.19 -92.71 -0.76 3.44 16 25 C -0.15 -4.38 7.44 31.18 0.23 -4.15 16 26 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.37 18.91 7.90 -92.70 -0.73 18.18 16 28 H 0.06 2.12 8.10 -2.39 -0.02 2.10 16 29 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.11 2.39 8.10 -2.39 -0.02 2.37 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.08 1.61 7.87 -2.39 -0.02 1.59 16 34 H 0.41 6.13 7.60 -92.71 -0.70 5.42 16 35 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.09 2.24 7.92 -2.39 -0.02 2.22 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -65.10 352.25 0.09 -65.01 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -1.05 Total: 26.42 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 4.40 Total: -4.51 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -5.06 Total: -116.96 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.07 Total: -16.32 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.16 Total: -0.33 kcal Total: -65.10 0.09 -65.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091168362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.402 kcal (2) G-P(sol) polarization free energy of solvation -65.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds