Wall clock time and date at job start Tue Mar 31 2020 16:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33620 * 125.80771 * 2 1 4 4 C 1.34220 * 110.92745 * 180.15917 * 3 2 1 5 5 S 1.76199 * 125.43331 * 179.87195 * 4 3 2 6 6 C 1.81399 * 104.45230 * 269.69576 * 5 4 3 7 7 O 1.42101 * 104.28007 * 153.62216 * 5 4 3 8 8 O 1.42102 * 104.27124 * 25.76559 * 5 4 3 9 9 C 1.34167 * 109.14352 * 359.61304 * 4 3 2 10 10 C 1.36500 * 125.80657 * 179.73256 * 2 1 3 11 11 C 1.47229 * 127.20470 * 359.97438 * 10 2 1 12 12 O 1.21540 * 119.99977 * 0.02562 * 11 10 2 13 13 O 1.34771 * 120.00272 * 179.97438 * 11 10 2 14 14 C 1.45192 * 117.00279 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47347 * 180.02562 * 14 13 11 16 16 O 1.21285 * 119.99985 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00287 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00358 * 180.02562 * 17 15 14 19 19 H 1.07997 * 119.99950 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00045 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00148 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99985 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47116 * 89.99499 * 22 20 18 24 24 H 1.48500 * 109.47040 * 209.99916 * 22 20 18 25 25 H 1.48505 * 109.46784 * 329.99999 * 22 20 18 26 26 H 1.09001 * 109.46953 * 270.26402 * 1 2 3 27 27 H 1.08987 * 109.47579 * 30.26570 * 1 2 3 28 28 H 1.09009 * 109.46935 * 150.26983 * 1 2 3 29 29 H 1.09001 * 109.46838 * 299.99950 * 6 5 4 30 30 H 1.08998 * 109.46934 * 59.99749 * 6 5 4 31 31 H 1.08992 * 109.47290 * 179.97438 * 6 5 4 32 32 H 1.07997 * 127.02784 * 180.25113 * 9 4 3 33 33 H 1.09001 * 109.47146 * 300.00693 * 14 13 11 34 34 H 1.08997 * 109.47097 * 60.00281 * 14 13 11 35 35 H 0.97006 * 119.99363 * 359.97438 * 17 15 14 36 36 H 0.97001 * 119.99974 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0836 0.0000 4 6 3.5859 0.7390 -0.0035 5 16 4.9419 1.8642 -0.0079 6 6 5.2912 2.1451 -1.7656 7 8 6.0012 1.1389 0.6013 8 8 4.4211 3.0426 0.5916 9 6 3.6857 -0.5990 0.0027 10 6 2.3056 -1.1070 0.0052 11 6 1.8754 -2.5150 0.0123 12 8 0.6912 -2.7886 0.0136 13 8 2.7947 -3.5005 0.0163 14 6 2.2984 -4.8650 0.0238 15 6 3.4619 -5.8228 0.0280 16 8 4.5976 -5.3973 0.0254 17 7 3.2404 -7.1522 0.0346 18 6 4.2988 -8.0235 0.0390 19 1 5.3101 -7.6446 0.0367 20 6 4.0703 -9.3941 0.0464 21 7 2.8398 -9.8551 0.0496 22 14 5.5126 -10.5814 0.0516 23 1 5.8958 -10.8885 1.4530 24 1 5.1236 -11.8357 -0.6416 25 1 6.6648 -9.9635 -0.6525 26 1 -0.3633 0.0047 1.0277 27 1 -0.3634 0.8875 -0.5179 28 1 -0.3633 -0.8925 -0.5097 29 1 5.5467 1.1982 -2.2411 30 1 4.4100 2.5679 -2.2481 31 1 6.1265 2.8384 -1.8637 32 1 4.5939 -1.1834 0.0057 33 1 1.6922 -5.0262 0.9152 34 1 1.6904 -5.0353 -0.8647 35 1 2.3319 -7.4925 0.0371 36 1 2.6803 -10.8119 0.0544 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118846828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:46 Heat of formation + Delta-G solvation = -166.919565 kcal Electronic energy + Delta-G solvation = -25249.347038 eV Core-core repulsion = 21021.763097 eV Total energy + Delta-G solvation = -4227.583941 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.07244 -40.16401 -38.16489 -37.56959 -36.42954 -36.21873 -34.03613 -33.60404 -32.56343 -31.41275 -30.04628 -28.81652 -27.58910 -24.93083 -23.89218 -22.09647 -20.91465 -19.64590 -19.31081 -18.60030 -18.10269 -17.30410 -17.21741 -16.45246 -16.25925 -16.10433 -16.08054 -15.71088 -15.38618 -14.55919 -14.07230 -14.03632 -13.83261 -13.75212 -13.66879 -13.61833 -13.39124 -12.99112 -12.61949 -12.54799 -12.44778 -12.39158 -12.10574 -11.81124 -11.64287 -11.47138 -11.15412 -10.64379 -10.50798 -10.45751 -10.41613 -10.31820 -9.63233 -9.42257 -8.56412 -8.11197 -6.52570 -3.94658 -0.53328 0.66851 1.10060 1.97779 2.43628 2.68868 2.82927 3.11757 3.22230 3.28319 3.37908 3.70312 3.76262 4.08447 4.13983 4.29468 4.40230 4.43417 4.57002 4.83814 4.95775 5.07310 5.12180 5.16312 5.17353 5.18610 5.47782 5.61889 5.63921 5.70130 6.00241 6.29072 6.48908 7.45570 7.71595 7.91905 8.45352 9.04446 9.36089 9.85789 10.64625 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.002506 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.447982 B =11171.201632 C =12502.192938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.130 3.870 3 O -0.119 6.119 4 C -0.577 4.577 5 S 2.532 3.468 6 C -0.644 4.644 7 O -0.910 6.910 8 O -0.921 6.921 9 C -0.028 4.028 10 C -0.244 4.244 11 C 0.538 3.462 12 O -0.511 6.511 13 O -0.317 6.317 14 C 0.062 3.938 15 C 0.438 3.562 16 O -0.575 6.575 17 N -0.552 5.552 18 C -0.303 4.303 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.897 5.897 22 Si 0.934 3.066 23 H -0.276 1.276 24 H -0.283 1.283 25 H -0.268 1.268 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.187 0.813 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.395 0.605 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.280 23.113 -4.309 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.073 3.927 3 O -0.013 6.013 4 C -0.703 4.703 5 S 2.705 3.295 6 C -0.795 4.795 7 O -0.908 6.908 8 O -0.919 6.919 9 C -0.048 4.048 10 C -0.247 4.247 11 C 0.383 3.617 12 O -0.403 6.403 13 O -0.231 6.231 14 C -0.016 4.016 15 C 0.222 3.778 16 O -0.459 6.459 17 N -0.189 5.189 18 C -0.432 4.432 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.538 5.538 22 Si 0.761 3.239 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.192 1.192 26 H 0.119 0.881 27 H 0.107 0.893 28 H 0.134 0.866 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.205 0.795 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.229 0.771 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.641 23.670 -3.589 24.086 hybrid contribution -0.422 -1.724 -0.594 1.871 sum -3.063 21.947 -4.183 22.551 Atomic orbital electron populations 1.20853 0.82468 1.06024 1.05496 1.23425 0.94794 0.83484 0.90983 1.83914 1.14108 1.32943 1.70346 1.35282 0.97979 1.11664 1.25416 1.05018 0.72834 0.73531 0.78164 1.30192 1.12655 1.12824 1.23833 1.93687 1.51052 1.72860 1.73171 1.93605 1.78632 1.46009 1.73627 1.23295 0.98595 0.92323 0.90623 1.20382 0.93469 0.91437 1.19381 1.19778 0.83885 0.85172 0.72815 1.90818 1.17843 1.84412 1.47193 1.86605 1.37866 1.15715 1.82925 1.22810 0.97258 0.77789 1.03698 1.19279 0.89140 0.83222 0.86140 1.90566 1.22914 1.77195 1.55231 1.41696 1.10184 1.03251 1.63757 1.19731 0.88916 0.86303 1.48219 0.87572 1.25317 0.97877 0.97706 0.96829 1.69613 1.19381 1.15168 1.49604 0.85792 0.80557 0.79026 0.78549 1.20226 1.20803 1.19242 0.88057 0.89278 0.86603 0.84355 0.84557 0.84262 0.79543 0.89313 0.89323 0.77144 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 9.89 36.00 0.36 -0.38 16 2 C 0.13 1.45 7.38 -34.94 -0.26 1.20 16 3 O -0.12 -1.29 10.52 7.72 0.08 -1.21 16 4 C -0.58 -6.03 6.94 29.30 0.20 -5.83 16 5 S 2.53 19.98 5.94 -107.50 -0.64 19.34 16 6 C -0.64 -2.13 10.80 101.05 1.09 -1.04 16 7 O -0.91 -10.27 17.69 -57.54 -1.02 -11.29 16 8 O -0.92 -10.11 17.95 -58.55 -1.05 -11.16 16 9 C -0.03 -0.35 10.66 -37.44 -0.40 -0.75 16 10 C -0.24 -3.33 6.32 -103.29 -0.65 -3.98 16 11 C 0.54 8.68 7.95 34.38 0.27 8.96 16 12 O -0.51 -8.38 14.64 -19.30 -0.28 -8.66 16 13 O -0.32 -5.94 9.67 -47.37 -0.46 -6.39 16 14 C 0.06 1.16 5.95 36.01 0.21 1.38 16 15 C 0.44 10.45 7.86 -10.98 -0.09 10.36 16 16 O -0.58 -15.86 16.08 -14.11 -0.23 -16.09 16 17 N -0.55 -13.81 5.29 -10.97 -0.06 -13.86 16 18 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 19 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 21 N -0.90 -23.88 13.05 55.50 0.72 -23.16 16 22 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.47 8.14 -51.94 -0.42 0.05 16 28 H 0.12 1.03 6.49 -51.92 -0.34 0.69 16 29 H 0.14 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.14 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.14 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.19 2.18 8.06 -52.49 -0.42 1.76 16 33 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -38.03 345.51 -5.79 -43.82 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -3.55 Total: 5.86 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 0.50 Total: 2.04 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.67 Total: -37.02 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -2.95 Total: -54.81 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 19.98 SS G_CDS: -0.64 Total: 19.34 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -38.03 -5.79 -43.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118846828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.099 kcal (2) G-P(sol) polarization free energy of solvation -38.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds