Wall clock time and date at job start Tue Mar 31 2020 16:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33620 * 125.80771 * 2 1 4 4 C 1.34220 * 110.92745 * 180.15917 * 3 2 1 5 5 S 1.76199 * 125.43331 * 179.87195 * 4 3 2 6 6 C 1.81399 * 104.45230 * 269.69576 * 5 4 3 7 7 O 1.42101 * 104.28007 * 153.62216 * 5 4 3 8 8 O 1.42102 * 104.27124 * 25.76559 * 5 4 3 9 9 C 1.34167 * 109.14352 * 359.61304 * 4 3 2 10 10 C 1.36500 * 125.80657 * 179.73256 * 2 1 3 11 11 C 1.47229 * 127.20470 * 359.97438 * 10 2 1 12 12 O 1.21540 * 119.99977 * 0.02562 * 11 10 2 13 13 O 1.34771 * 120.00272 * 179.97438 * 11 10 2 14 14 C 1.45192 * 117.00279 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47347 * 180.02562 * 14 13 11 16 16 O 1.21285 * 119.99985 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00287 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00358 * 180.02562 * 17 15 14 19 19 H 1.07997 * 119.99950 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00045 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00148 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99985 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47116 * 89.99499 * 22 20 18 24 24 H 1.48500 * 109.47040 * 209.99916 * 22 20 18 25 25 H 1.48505 * 109.46784 * 329.99999 * 22 20 18 26 26 H 1.09001 * 109.46953 * 270.26402 * 1 2 3 27 27 H 1.08987 * 109.47579 * 30.26570 * 1 2 3 28 28 H 1.09009 * 109.46935 * 150.26983 * 1 2 3 29 29 H 1.09001 * 109.46838 * 299.99950 * 6 5 4 30 30 H 1.08998 * 109.46934 * 59.99749 * 6 5 4 31 31 H 1.08992 * 109.47290 * 179.97438 * 6 5 4 32 32 H 1.07997 * 127.02784 * 180.25113 * 9 4 3 33 33 H 1.09001 * 109.47146 * 300.00693 * 14 13 11 34 34 H 1.08997 * 109.47097 * 60.00281 * 14 13 11 35 35 H 0.97006 * 119.99363 * 359.97438 * 17 15 14 36 36 H 0.97001 * 119.99974 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0836 0.0000 4 6 3.5859 0.7390 -0.0035 5 16 4.9419 1.8642 -0.0079 6 6 5.2912 2.1451 -1.7656 7 8 6.0012 1.1389 0.6013 8 8 4.4211 3.0426 0.5916 9 6 3.6857 -0.5990 0.0027 10 6 2.3056 -1.1070 0.0052 11 6 1.8754 -2.5150 0.0123 12 8 0.6912 -2.7886 0.0136 13 8 2.7947 -3.5005 0.0163 14 6 2.2984 -4.8650 0.0238 15 6 3.4619 -5.8228 0.0280 16 8 4.5976 -5.3973 0.0254 17 7 3.2404 -7.1522 0.0346 18 6 4.2988 -8.0235 0.0390 19 1 5.3101 -7.6446 0.0367 20 6 4.0703 -9.3941 0.0464 21 7 2.8398 -9.8551 0.0496 22 14 5.5126 -10.5814 0.0516 23 1 5.8958 -10.8885 1.4530 24 1 5.1236 -11.8357 -0.6416 25 1 6.6648 -9.9635 -0.6525 26 1 -0.3633 0.0047 1.0277 27 1 -0.3634 0.8875 -0.5179 28 1 -0.3633 -0.8925 -0.5097 29 1 5.5467 1.1982 -2.2411 30 1 4.4100 2.5679 -2.2481 31 1 6.1265 2.8384 -1.8637 32 1 4.5939 -1.1834 0.0057 33 1 1.6922 -5.0262 0.9152 34 1 1.6904 -5.0353 -0.8647 35 1 2.3319 -7.4925 0.0371 36 1 2.6803 -10.8119 0.0544 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118846828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:45 Heat of formation + Delta-G solvation = -196.476153 kcal Electronic energy + Delta-G solvation = -25250.628708 eV Core-core repulsion = 21021.763097 eV Total energy + Delta-G solvation = -4228.865611 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.97464 -41.52448 -40.03468 -38.32040 -37.62382 -37.17853 -36.06137 -34.55378 -33.44157 -33.36003 -30.43287 -30.28413 -28.54331 -26.72066 -25.11467 -23.08267 -21.80852 -21.47439 -20.35758 -20.09530 -19.41354 -18.44801 -18.18904 -17.81771 -17.63748 -17.08908 -16.93846 -16.76258 -16.57478 -16.30820 -15.76316 -15.72219 -14.86068 -14.53336 -14.46470 -14.14036 -14.02022 -13.97257 -13.89152 -13.68666 -13.57075 -13.35385 -13.31572 -13.21836 -12.95625 -12.63596 -12.49422 -12.12849 -12.05090 -11.94758 -11.86586 -11.60011 -11.38250 -10.55265 -10.29695 -10.13990 -8.54292 -6.04968 -1.12109 -0.24692 0.10003 1.09209 1.34537 1.35713 1.43704 1.56217 1.66551 1.81379 1.84735 2.28326 2.80596 2.97988 3.11305 3.14604 3.33718 3.46838 3.50688 3.91064 4.10236 4.11461 4.11722 4.17889 4.19427 4.32672 4.45612 4.50843 4.75146 4.96235 4.97521 5.15514 5.35454 5.44533 5.86653 6.39767 6.50847 7.00888 7.37143 7.90768 8.62714 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.002506 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.447982 B =11171.201632 C =12502.192938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.145 3.855 3 O -0.116 6.116 4 C -0.564 4.564 5 S 2.534 3.466 6 C -0.611 4.611 7 O -0.953 6.953 8 O -0.956 6.956 9 C -0.052 4.052 10 C -0.279 4.279 11 C 0.540 3.460 12 O -0.517 6.517 13 O -0.339 6.339 14 C 0.073 3.927 15 C 0.435 3.565 16 O -0.618 6.618 17 N -0.556 5.556 18 C -0.339 4.339 19 H 0.084 0.916 20 C -0.008 4.008 21 N -0.915 5.915 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.268 1.268 25 H -0.270 1.270 26 H 0.115 0.885 27 H 0.121 0.879 28 H 0.107 0.893 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.169 0.831 32 H 0.183 0.817 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.401 0.599 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.880 24.213 -5.539 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.088 3.912 3 O -0.010 6.010 4 C -0.688 4.688 5 S 2.709 3.291 6 C -0.767 4.767 7 O -0.950 6.950 8 O -0.953 6.953 9 C -0.072 4.072 10 C -0.282 4.282 11 C 0.386 3.614 12 O -0.409 6.409 13 O -0.254 6.254 14 C -0.004 4.004 15 C 0.222 3.778 16 O -0.505 6.505 17 N -0.193 5.193 18 C -0.468 4.468 19 H 0.102 0.898 20 C -0.208 4.208 21 N -0.555 5.555 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.193 1.193 25 H -0.195 1.195 26 H 0.133 0.867 27 H 0.140 0.860 28 H 0.125 0.875 29 H 0.173 0.827 30 H 0.180 0.820 31 H 0.187 0.813 32 H 0.200 0.800 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.235 0.765 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.312 24.749 -4.772 25.421 hybrid contribution -0.250 -1.944 -0.272 1.979 sum -3.562 22.805 -5.044 23.626 Atomic orbital electron populations 1.21050 0.80044 1.07173 1.06626 1.23959 0.95962 0.82634 0.88630 1.83945 1.14302 1.32753 1.69984 1.35710 0.98239 1.11266 1.23539 1.05078 0.71351 0.71983 0.80712 1.30001 1.14936 1.14727 1.16996 1.93632 1.51780 1.73390 1.76234 1.93557 1.78860 1.46435 1.76448 1.23333 0.98244 0.93276 0.92329 1.20415 0.94723 0.90705 1.22359 1.20064 0.83534 0.85439 0.72343 1.90800 1.17764 1.84558 1.47746 1.86594 1.39266 1.15886 1.83660 1.22594 0.94775 0.77258 1.05787 1.20079 0.90009 0.83452 0.84274 1.90531 1.25220 1.77956 1.56787 1.41722 1.09991 1.03704 1.63923 1.19719 0.88775 0.87541 1.50741 0.89804 1.26121 1.00581 0.98565 0.95580 1.69667 1.20742 1.15982 1.49065 0.84863 0.77276 0.77022 0.78800 1.19526 1.19305 1.19502 0.86700 0.86031 0.87451 0.82682 0.82044 0.81302 0.79981 0.87277 0.86938 0.76474 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.28 9.89 71.24 0.70 -0.57 16 2 C 0.15 3.08 7.38 25.28 0.19 3.27 16 3 O -0.12 -2.37 10.52 4.72 0.05 -2.32 16 4 C -0.56 -11.50 6.94 66.89 0.46 -11.03 16 5 S 2.53 37.96 5.94 -56.49 -0.34 37.62 16 6 C -0.61 -1.79 10.80 113.37 1.22 -0.57 16 7 O -0.95 -21.97 17.69 -127.65 -2.26 -24.23 16 8 O -0.96 -20.41 17.95 -126.68 -2.27 -22.69 16 9 C -0.05 -1.31 10.66 23.66 0.25 -1.06 16 10 C -0.28 -7.64 6.32 -19.00 -0.12 -7.76 16 11 C 0.54 17.46 7.95 70.18 0.56 18.02 16 12 O -0.52 -16.62 14.64 19.71 0.29 -16.33 16 13 O -0.34 -12.92 9.67 -50.43 -0.49 -13.40 16 14 C 0.07 2.73 5.95 71.24 0.42 3.16 16 15 C 0.44 21.29 7.86 87.66 0.69 21.98 16 16 O -0.62 -35.38 16.08 15.75 0.25 -35.12 16 17 N -0.56 -28.41 5.29 -306.99 -1.62 -30.03 16 18 C -0.34 -18.99 9.68 84.04 0.81 -18.18 16 19 H 0.08 5.00 7.16 -2.91 -0.02 4.97 16 20 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 21 N -0.91 -48.27 13.05 21.66 0.28 -47.99 16 22 Si 1.00 41.90 29.55 68.60 2.03 43.93 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 24 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.11 1.73 6.49 -2.38 -0.02 1.72 16 29 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.16 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.17 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.18 4.59 8.06 -2.91 -0.02 4.57 16 33 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 34 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 35 H 0.40 19.17 7.90 -92.70 -0.73 18.43 16 36 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -84.35 345.51 2.01 -82.34 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.42 Total: 20.92 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 5.66 Total: 7.31 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -1.34 Total: -78.02 kcal Atomic # 8 Polarization: -109.67 SS G_CDS: -4.43 Total: -114.09 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 37.96 SS G_CDS: -0.34 Total: 37.62 kcal Total: -84.35 2.01 -82.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118846828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.135 kcal (2) G-P(sol) polarization free energy of solvation -84.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds