Wall clock time and date at job start Tue Mar 31 2020 16:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86799 * 119.99942 * 2 1 4 4 H 1.48504 * 109.47036 * 269.99840 * 3 2 1 5 5 H 1.48501 * 109.47130 * 29.99451 * 3 2 1 6 6 H 1.48500 * 109.47331 * 149.99846 * 3 2 1 7 7 C 1.38947 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00100 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99841 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99834 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99717 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99774 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47222 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00519 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47345 * 180.02562 * 14 13 12 16 16 N 1.46506 * 109.47162 * 180.02562 * 15 14 13 17 17 C 1.34773 * 119.99969 * 180.02562 * 16 15 14 18 18 O 1.21713 * 120.00375 * 359.71676 * 17 16 15 19 19 C 1.46446 * 120.00001 * 180.02562 * 17 16 15 20 20 S 1.75824 * 125.45842 * 359.74199 * 19 17 16 21 21 C 1.70608 * 91.58584 * 180.02562 * 20 19 17 22 22 C 1.33775 * 110.99924 * 359.97438 * 21 20 19 23 23 C 1.36789 * 125.46274 * 179.44036 * 19 17 16 24 24 Cl 1.73594 * 123.38036 * 359.97438 * 23 19 17 25 25 H 0.96997 * 120.00293 * 0.02562 * 1 2 3 26 26 H 0.96995 * 119.99856 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47560 * 59.99580 * 12 10 9 28 28 H 1.09000 * 109.47125 * 299.99576 * 12 10 9 29 29 H 1.00903 * 110.99955 * 303.95792 * 13 12 10 30 30 H 1.08995 * 109.46908 * 59.99573 * 14 13 12 31 31 H 1.09006 * 109.46700 * 300.00283 * 14 13 12 32 32 H 1.08995 * 109.47596 * 59.99835 * 15 14 13 33 33 H 1.09006 * 109.47322 * 299.99743 * 15 14 13 34 34 H 0.97004 * 120.00008 * 359.97438 * 16 15 14 35 35 H 1.07999 * 124.50295 * 179.97438 * 21 20 19 36 36 H 1.07994 * 122.45421 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1984 -5.9795 0.0027 14 6 1.4982 -7.2708 0.0026 15 6 2.5231 -8.4067 0.0038 16 7 1.8247 -9.6946 0.0031 17 6 2.5295 -10.8434 0.0045 18 8 3.7462 -10.8110 0.0011 19 6 1.8314 -12.1307 0.0033 20 16 0.0862 -12.3447 0.0065 21 6 0.2469 -14.0432 0.0034 22 6 1.5354 -14.4028 -0.0004 23 6 2.4325 -13.3595 -0.0064 24 17 4.1543 -13.5804 -0.0197 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3906 0.0005 27 1 0.6174 -4.9213 -0.8880 28 1 0.6169 -4.9201 0.8920 29 1 2.8333 -5.9128 -0.7787 30 1 0.8736 -7.3454 -0.8875 31 1 0.8730 -7.3451 0.8925 32 1 3.1474 -8.3320 0.8941 33 1 3.1486 -8.3327 -0.8858 34 1 0.8550 -9.7205 0.0025 35 1 -0.5816 -14.7360 0.0044 36 1 1.8486 -15.4364 -0.0033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127880727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:55 Heat of formation + Delta-G solvation = -39.179475 kcal Electronic energy + Delta-G solvation = -21757.598623 eV Core-core repulsion = 18008.555824 eV Total energy + Delta-G solvation = -3749.042800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.07370 -38.44093 -38.22618 -36.43212 -36.29315 -34.42579 -33.76809 -31.26861 -30.82919 -29.12679 -26.32079 -25.22312 -23.89814 -22.33801 -21.66637 -19.95797 -19.31093 -19.04617 -17.91346 -16.90057 -16.39678 -16.15729 -15.87920 -15.58775 -15.35182 -14.59250 -14.32201 -14.27031 -14.04804 -13.85407 -13.63235 -13.45021 -13.29082 -13.09527 -12.43133 -11.95758 -11.87655 -11.79916 -11.54097 -11.48430 -11.45579 -11.19533 -11.03998 -10.39661 -10.25242 -10.21995 -9.54741 -9.52127 -9.26742 -9.02200 -8.52173 -8.15111 -7.97693 -6.42941 -3.83748 -0.14584 0.65477 1.13889 1.70132 2.04857 2.70578 2.81010 3.17562 3.26441 3.32786 3.88630 4.09189 4.23795 4.38703 4.48690 4.56318 4.82942 4.95224 5.09792 5.15720 5.24715 5.34411 5.36153 5.42998 5.70238 5.78516 5.86980 5.92315 6.07073 6.23453 7.03944 7.13229 7.54260 7.54656 7.84480 8.04920 8.59646 9.16704 9.52488 10.03815 10.74749 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.033097 B = 0.001697 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.783099 B =16499.523504 C =17317.527375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.052 3.948 13 N -0.665 5.665 14 C 0.049 3.951 15 C 0.122 3.878 16 N -0.724 5.724 17 C 0.585 3.415 18 O -0.505 6.505 19 C -0.266 4.266 20 S 0.243 5.757 21 C -0.222 4.222 22 C -0.143 4.143 23 C 0.017 3.983 24 Cl -0.012 7.012 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.353 0.647 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.396 0.604 35 H 0.179 0.821 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.125 -30.043 -0.897 30.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.298 5.298 14 C -0.082 4.082 15 C -0.001 4.001 16 N -0.376 5.376 17 C 0.370 3.630 18 O -0.381 6.381 19 C -0.387 4.387 20 S 0.509 5.491 21 C -0.360 4.360 22 C -0.174 4.174 23 C -0.025 4.025 24 Cl 0.017 6.983 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.173 0.827 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.230 0.770 35 H 0.196 0.804 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.541 -28.841 -0.211 29.369 hybrid contribution 0.092 -0.380 -0.905 0.985 sum -5.449 -29.221 -1.116 29.745 Atomic orbital electron populations 1.69610 1.05937 1.28178 1.50611 1.25268 0.95652 0.99754 0.97294 0.85846 0.79269 0.80736 0.78376 1.20423 1.20920 1.19372 1.19716 0.93410 0.82202 1.47560 0.87871 1.41856 1.09195 1.04588 1.64346 1.19771 0.88398 0.84692 0.84645 1.90536 1.13721 1.87011 1.55301 1.21671 0.94212 0.90783 1.01360 1.59931 1.18841 0.99375 1.51667 1.22083 0.95536 0.89429 1.01117 1.21341 0.94955 0.79956 1.03892 1.45747 1.09909 1.05918 1.76051 1.16701 0.86887 0.81987 0.77419 1.90925 1.12226 1.86584 1.48337 1.24576 0.98159 0.97271 1.18715 1.83135 0.99760 0.99650 1.66570 1.25226 1.01379 1.01286 1.08072 1.19801 0.91211 1.00573 1.05859 1.20388 0.88229 0.92134 1.01764 1.98421 1.06785 1.97038 1.96032 0.91870 0.77454 0.93680 0.89423 0.82739 0.94828 0.90372 0.89723 0.90905 0.77022 0.80373 0.82675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 10 C 0.44 10.27 7.82 -10.99 -0.09 10.19 16 11 O -0.58 -15.80 15.78 5.55 0.09 -15.71 16 12 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 13 N -0.66 -10.31 6.13 -115.07 -0.70 -11.02 16 14 C 0.05 0.53 5.80 -3.83 -0.02 0.51 16 15 C 0.12 1.36 5.93 -4.04 -0.02 1.34 16 16 N -0.72 -6.94 5.55 -61.69 -0.34 -7.29 16 17 C 0.59 6.88 7.78 -12.96 -0.10 6.78 16 18 O -0.50 -7.75 15.09 5.18 0.08 -7.67 16 19 C -0.27 -2.49 6.45 -36.80 -0.24 -2.72 16 20 S 0.24 1.30 22.15 -107.50 -2.38 -1.09 16 21 C -0.22 -1.04 10.92 29.17 0.32 -0.72 16 22 C -0.14 -0.91 10.06 -41.38 -0.42 -1.33 16 23 C 0.02 0.16 6.39 -40.34 -0.26 -0.09 16 24 Cl -0.01 -0.13 27.24 -51.86 -1.41 -1.54 16 25 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 26 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.35 5.68 8.43 -39.29 -0.33 5.35 16 30 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.40 2.70 7.58 -40.82 -0.31 2.39 16 35 H 0.18 0.31 8.06 -52.49 -0.42 -0.11 16 36 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 347.99 15.07 5.24 5.24 Total: -1.00 -33.98 347.99 -8.74 -42.72 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -3.86 Total: 11.37 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -1.10 Total: 6.82 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.38 Total: -56.14 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.17 Total: -23.38 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.38 Total: -1.09 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.41 Total: -1.54 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.98 -8.74 -42.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127880727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.544 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds