Wall clock time and date at job start Tue Mar 31 2020 16:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86799 * 119.99942 * 2 1 4 4 H 1.48504 * 109.47036 * 269.99840 * 3 2 1 5 5 H 1.48501 * 109.47130 * 29.99451 * 3 2 1 6 6 H 1.48500 * 109.47331 * 149.99846 * 3 2 1 7 7 C 1.38947 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00100 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99841 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99834 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99717 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99774 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47222 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00519 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47345 * 180.02562 * 14 13 12 16 16 N 1.46506 * 109.47162 * 180.02562 * 15 14 13 17 17 C 1.34773 * 119.99969 * 180.02562 * 16 15 14 18 18 O 1.21713 * 120.00375 * 359.71676 * 17 16 15 19 19 C 1.46446 * 120.00001 * 180.02562 * 17 16 15 20 20 S 1.75824 * 125.45842 * 359.74199 * 19 17 16 21 21 C 1.70608 * 91.58584 * 180.02562 * 20 19 17 22 22 C 1.33775 * 110.99924 * 359.97438 * 21 20 19 23 23 C 1.36789 * 125.46274 * 179.44036 * 19 17 16 24 24 Cl 1.73594 * 123.38036 * 359.97438 * 23 19 17 25 25 H 0.96997 * 120.00293 * 0.02562 * 1 2 3 26 26 H 0.96995 * 119.99856 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47560 * 59.99580 * 12 10 9 28 28 H 1.09000 * 109.47125 * 299.99576 * 12 10 9 29 29 H 1.00903 * 110.99955 * 303.95792 * 13 12 10 30 30 H 1.08995 * 109.46908 * 59.99573 * 14 13 12 31 31 H 1.09006 * 109.46700 * 300.00283 * 14 13 12 32 32 H 1.08995 * 109.47596 * 59.99835 * 15 14 13 33 33 H 1.09006 * 109.47322 * 299.99743 * 15 14 13 34 34 H 0.97004 * 120.00008 * 359.97438 * 16 15 14 35 35 H 1.07999 * 124.50295 * 179.97438 * 21 20 19 36 36 H 1.07994 * 122.45421 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1984 -5.9795 0.0027 14 6 1.4982 -7.2708 0.0026 15 6 2.5231 -8.4067 0.0038 16 7 1.8247 -9.6946 0.0031 17 6 2.5295 -10.8434 0.0045 18 8 3.7462 -10.8110 0.0011 19 6 1.8314 -12.1307 0.0033 20 16 0.0862 -12.3447 0.0065 21 6 0.2469 -14.0432 0.0034 22 6 1.5354 -14.4028 -0.0004 23 6 2.4325 -13.3595 -0.0064 24 17 4.1543 -13.5804 -0.0197 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3906 0.0005 27 1 0.6174 -4.9213 -0.8880 28 1 0.6169 -4.9201 0.8920 29 1 2.8333 -5.9128 -0.7787 30 1 0.8736 -7.3454 -0.8875 31 1 0.8730 -7.3451 0.8925 32 1 3.1474 -8.3320 0.8941 33 1 3.1486 -8.3327 -0.8858 34 1 0.8550 -9.7205 0.0025 35 1 -0.5816 -14.7360 0.0044 36 1 1.8486 -15.4364 -0.0033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127880727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:55 Heat of formation + Delta-G solvation = -66.294027 kcal Electronic energy + Delta-G solvation = -21758.774399 eV Core-core repulsion = 18008.555824 eV Total energy + Delta-G solvation = -3750.218575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.91471 -40.14913 -38.94764 -37.45051 -37.09335 -36.00146 -35.26713 -33.26610 -31.63333 -30.09968 -27.75058 -26.18899 -25.28677 -23.27300 -22.47587 -21.10273 -20.54231 -19.92115 -19.75297 -17.84003 -17.53061 -17.25073 -16.95472 -16.64907 -16.34804 -16.26187 -15.78760 -15.43734 -15.01096 -14.93509 -14.53922 -14.47709 -14.34549 -13.94722 -13.76994 -13.52017 -13.30466 -12.93612 -12.60650 -12.53639 -12.43845 -12.40469 -12.30823 -12.12032 -11.87316 -11.50583 -11.15668 -10.36475 -10.34702 -10.01045 -9.91373 -9.50912 -9.38146 -8.46516 -5.94976 -0.72398 0.11567 0.69750 1.16841 1.38337 1.40446 1.42490 1.54995 1.87441 1.99317 2.05859 2.30549 3.00927 3.20922 3.53241 3.68083 3.86858 3.98954 4.10129 4.15314 4.32587 4.45806 4.51382 4.61863 4.65923 4.86832 4.90921 4.94949 4.99542 5.21281 5.41645 5.84499 6.07268 6.32148 6.33975 6.60741 7.03660 7.13284 7.56824 8.12613 8.70727 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.033097 B = 0.001697 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.783099 B =16499.523504 C =17317.527375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.435 3.565 11 O -0.626 6.626 12 C 0.068 3.932 13 N -0.686 5.686 14 C 0.058 3.942 15 C 0.130 3.870 16 N -0.710 5.710 17 C 0.581 3.419 18 O -0.553 6.553 19 C -0.308 4.308 20 S 0.307 5.693 21 C -0.202 4.202 22 C -0.160 4.160 23 C 0.007 3.993 24 Cl -0.040 7.040 25 H 0.278 0.722 26 H 0.398 0.602 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.346 0.654 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.412 0.588 35 H 0.216 0.784 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.191 -31.126 -0.995 32.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.512 6.512 12 C -0.064 4.064 13 N -0.319 5.319 14 C -0.071 4.071 15 C 0.005 3.995 16 N -0.363 5.363 17 C 0.367 3.633 18 O -0.433 6.433 19 C -0.429 4.429 20 S 0.574 5.426 21 C -0.340 4.340 22 C -0.190 4.190 23 C -0.037 4.037 24 Cl -0.011 7.011 25 H 0.087 0.913 26 H 0.232 0.768 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.165 0.835 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.249 0.751 35 H 0.233 0.767 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.689 -29.938 -0.308 31.175 hybrid contribution 0.936 -0.137 -0.871 1.286 sum -7.753 -30.075 -1.179 31.081 Atomic orbital electron populations 1.69661 1.06713 1.29299 1.50266 1.26015 0.96573 1.02332 0.96290 0.84943 0.77862 0.76984 0.78636 1.19623 1.19465 1.19985 1.19656 0.92687 0.84118 1.49969 0.90476 1.41916 1.09377 1.04640 1.65015 1.20952 0.88271 0.86325 0.82219 1.90506 1.16061 1.87994 1.56665 1.21530 0.93722 0.87427 1.03717 1.59893 1.19378 1.00794 1.51828 1.22077 0.95196 0.86778 1.03099 1.21109 0.95023 0.80976 1.02343 1.45547 1.10600 1.04864 1.75282 1.17109 0.86566 0.83142 0.76452 1.90891 1.14351 1.87404 1.50642 1.24523 1.01077 0.95981 1.21338 1.82885 0.95478 0.99688 1.64545 1.25743 1.01678 1.01775 1.04843 1.19933 0.91374 1.00711 1.06963 1.20745 0.87272 0.93281 1.02439 1.98404 1.09353 1.97119 1.96217 0.91271 0.76812 0.90792 0.87173 0.83516 0.92254 0.88634 0.91907 0.92098 0.75148 0.76698 0.81097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.57 -28.96 5.29 -306.98 -1.62 -30.58 16 10 C 0.43 20.39 7.82 87.65 0.69 21.07 16 11 O -0.63 -34.88 15.78 -3.05 -0.05 -34.93 16 12 C 0.07 2.18 6.17 85.56 0.53 2.70 16 13 N -0.69 -20.49 6.13 -517.96 -3.17 -23.67 16 14 C 0.06 1.14 5.80 86.30 0.50 1.64 16 15 C 0.13 2.86 5.93 86.38 0.51 3.38 16 16 N -0.71 -12.94 5.55 -467.31 -2.59 -15.54 16 17 C 0.58 13.76 7.78 86.38 0.67 14.44 16 18 O -0.55 -17.93 15.09 -4.39 -0.07 -18.00 16 19 C -0.31 -5.50 6.45 24.07 0.16 -5.35 16 20 S 0.31 2.29 22.15 -56.49 -1.25 1.03 16 21 C -0.20 -1.12 10.92 66.81 0.73 -0.39 16 22 C -0.16 -1.71 10.06 21.11 0.21 -1.50 16 23 C 0.01 0.12 6.39 21.78 0.14 0.26 16 24 Cl -0.04 -0.91 27.24 -2.72 -0.07 -0.98 16 25 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 26 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.35 11.11 8.43 -89.69 -0.76 10.36 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.41 4.63 7.58 -92.71 -0.70 3.93 16 35 H 0.22 -0.42 8.06 -2.91 -0.02 -0.45 16 36 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -77.19 347.99 -2.13 -79.32 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -1.03 Total: 29.19 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 5.41 Total: 17.90 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -7.11 Total: -118.47 kcal Atomic # 8 Polarization: -52.81 SS G_CDS: -0.11 Total: -52.93 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.25 Total: 1.03 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.07 Total: -0.98 kcal Total: -77.19 -2.13 -79.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127880727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.030 kcal (2) G-P(sol) polarization free energy of solvation -77.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds