Wall clock time and date at job start Tue Mar 31 2020 16:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86802 * 119.99829 * 2 1 4 4 H 1.48499 * 109.47205 * 270.00053 * 3 2 1 5 5 H 1.48492 * 109.47157 * 30.00248 * 3 2 1 6 6 H 1.48502 * 109.47074 * 150.00239 * 3 2 1 7 7 C 1.38953 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99670 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00239 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00169 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00015 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99911 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.46807 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99459 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.46947 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47198 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21633 * 120.00238 * 359.72097 * 17 16 15 19 19 C 1.47160 * 119.99509 * 179.72415 * 17 16 15 20 20 C 1.36041 * 123.46794 * 0.02562 * 19 17 16 21 21 S 1.70443 * 110.82846 * 180.02562 * 20 19 17 22 22 C 1.75496 * 92.46089 * 0.02562 * 21 20 19 23 23 C 1.32851 * 110.57865 * 359.71123 * 22 21 20 24 24 Cl 1.73600 * 123.46940 * 180.28036 * 23 22 21 25 25 H 0.96999 * 120.00459 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99386 * 359.97438 * 9 7 2 27 27 H 1.08992 * 109.47001 * 59.99355 * 12 10 9 28 28 H 1.09001 * 109.46613 * 299.99743 * 12 10 9 29 29 H 1.00894 * 110.99641 * 303.95280 * 13 12 10 30 30 H 1.08995 * 109.47478 * 60.00426 * 14 13 12 31 31 H 1.09006 * 109.47065 * 299.99823 * 14 13 12 32 32 H 1.09009 * 109.46730 * 59.99875 * 15 14 13 33 33 H 1.08998 * 109.46846 * 300.00419 * 15 14 13 34 34 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 35 35 H 1.08003 * 124.58807 * 0.02562 * 20 19 17 36 36 H 1.08001 * 124.71357 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3907 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2438 -4.8630 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 1.4982 -7.2708 -0.0026 15 6 2.5231 -8.4068 -0.0038 16 7 1.8248 -9.6946 -0.0044 17 6 2.5296 -10.8434 0.0002 18 8 3.7455 -10.8109 -0.0002 19 6 1.8281 -12.1370 0.0058 20 6 0.4728 -12.2555 0.0061 21 16 0.0078 -13.8952 0.0139 22 6 1.6741 -14.4461 0.0177 23 6 2.5078 -13.4118 0.0068 24 17 4.2361 -13.5753 -0.0003 25 1 -0.4851 0.8400 0.0004 26 1 0.3535 -2.3906 -0.0016 27 1 0.6175 -4.9205 -0.8923 28 1 0.6169 -4.9209 0.8876 29 1 2.8333 -5.9120 -0.7840 30 1 0.8731 -7.3452 -0.8924 31 1 0.8736 -7.3454 0.8876 32 1 3.1487 -8.3326 0.8858 33 1 3.1474 -8.3320 -0.8942 34 1 0.8551 -9.7205 -0.0037 35 1 -0.2154 -11.4231 0.0019 36 1 1.9793 -15.4820 0.0226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130003474.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:15 Heat of formation + Delta-G solvation = -40.728079 kcal Electronic energy + Delta-G solvation = -21773.802534 eV Core-core repulsion = 18024.692582 eV Total energy + Delta-G solvation = -3749.109952 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.18924 -38.36172 -37.76546 -36.33265 -36.19805 -34.41199 -33.76614 -31.27033 -30.79453 -29.07191 -26.29010 -25.26063 -23.89902 -22.32558 -21.68149 -19.72042 -19.32089 -18.75212 -17.91027 -17.55316 -16.28175 -16.00557 -15.90197 -15.39261 -15.26534 -14.58592 -14.28815 -14.22570 -13.94671 -13.79373 -13.59516 -13.44641 -13.33124 -13.11512 -12.41917 -12.02546 -11.93830 -11.84376 -11.53928 -11.48311 -11.44770 -11.12450 -11.04235 -10.39918 -10.23218 -10.08756 -9.55448 -9.52486 -9.30408 -8.89779 -8.52323 -8.15142 -7.98067 -6.43293 -3.84058 0.13032 0.71328 1.11908 1.30911 2.17358 2.77644 3.00261 3.17324 3.26200 3.32555 3.88311 4.03836 4.10935 4.34415 4.52186 4.68465 4.79657 4.85098 4.96087 5.15714 5.24219 5.24916 5.33432 5.35603 5.70067 5.80541 5.88292 5.92373 6.13328 6.23672 7.06381 7.20397 7.54088 7.54670 7.95312 8.04591 8.59315 9.16397 9.52147 10.03504 10.74407 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.032291 B = 0.001649 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.896346 B =16980.731690 C =17819.821915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.053 3.947 13 N -0.665 5.665 14 C 0.050 3.950 15 C 0.122 3.878 16 N -0.723 5.723 17 C 0.572 3.428 18 O -0.513 6.513 19 C -0.144 4.144 20 C -0.209 4.209 21 S 0.233 5.767 22 C -0.238 4.238 23 C -0.008 4.008 24 Cl -0.015 7.015 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.353 0.647 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.397 0.603 35 H 0.179 0.821 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.206 -30.589 -0.881 31.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.081 4.081 15 C -0.002 4.002 16 N -0.375 5.375 17 C 0.356 3.644 18 O -0.388 6.388 19 C -0.163 4.163 20 C -0.347 4.347 21 S 0.498 5.502 22 C -0.374 4.374 23 C -0.047 4.047 24 Cl 0.014 6.986 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.173 0.827 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.231 0.769 35 H 0.196 0.804 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.754 -31.113 -0.197 31.642 hybrid contribution 0.305 1.616 -0.902 1.875 sum -5.448 -29.498 -1.100 30.017 Atomic orbital electron populations 1.69607 1.05945 1.28183 1.50606 1.25269 0.95651 0.99759 0.97287 0.85843 0.79269 0.80725 0.78378 1.20421 1.20919 1.19368 1.19716 0.93414 0.82202 1.47568 0.87870 1.41853 1.09191 1.04592 1.64345 1.19773 0.88402 0.84691 0.84653 1.90537 1.13718 1.87008 1.55296 1.21670 0.94212 0.90813 1.01317 1.59919 1.18852 0.99402 1.51678 1.22078 0.95549 0.89458 1.00986 1.21315 0.94945 0.80179 1.03749 1.45722 1.10103 1.05781 1.75928 1.17390 0.87014 0.82761 0.77279 1.90886 1.12694 1.87071 1.48168 1.20004 0.92121 0.93876 1.10299 1.25675 0.98617 1.04282 1.06148 1.83194 1.03924 0.94926 1.68152 1.25466 0.96479 1.03366 1.12063 1.20677 0.87833 0.91906 1.04276 1.98417 1.06123 1.97580 1.96479 0.91868 0.77462 0.93717 0.89456 0.82733 0.94932 0.90455 0.89882 0.91064 0.76903 0.80379 0.80283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.17 5.29 -10.96 -0.06 -14.22 16 10 C 0.44 10.29 7.82 -10.98 -0.09 10.21 16 11 O -0.58 -15.83 15.78 5.55 0.09 -15.75 16 12 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 13 N -0.67 -10.36 6.13 -115.05 -0.70 -11.06 16 14 C 0.05 0.54 5.80 -3.82 -0.02 0.52 16 15 C 0.12 1.36 5.93 -4.04 -0.02 1.34 16 16 N -0.72 -6.68 5.52 -61.46 -0.34 -7.02 16 17 C 0.57 6.64 7.79 -12.64 -0.10 6.54 16 18 O -0.51 -7.91 15.05 5.25 0.08 -7.83 16 19 C -0.14 -1.32 5.98 -104.61 -0.63 -1.94 16 20 C -0.21 -1.17 10.38 29.94 0.31 -0.86 16 21 S 0.23 0.98 23.02 -107.50 -2.47 -1.49 16 22 C -0.24 -1.47 11.00 28.88 0.32 -1.15 16 23 C -0.01 -0.08 6.49 -38.98 -0.25 -0.33 16 24 Cl -0.01 -0.16 27.24 -51.86 -1.41 -1.58 16 25 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.35 5.72 8.43 -39.29 -0.33 5.39 16 30 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.09 8.14 -51.92 -0.42 0.66 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.40 2.37 6.97 -40.82 -0.28 2.08 16 35 H 0.18 0.49 7.01 -52.48 -0.37 0.12 16 36 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 347.19 15.07 5.23 5.23 Total: -1.00 -34.45 347.19 -8.42 -42.87 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -3.78 Total: 11.32 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -0.75 Total: 7.17 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.38 Total: -55.96 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.17 Total: -23.58 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.47 Total: -1.49 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.41 Total: -1.58 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.45 -8.42 -42.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130003474.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.139 kcal (2) G-P(sol) polarization free energy of solvation -34.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds