Wall clock time and date at job start Tue Mar 31 2020 16:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86802 * 119.99829 * 2 1 4 4 H 1.48499 * 109.47205 * 270.00053 * 3 2 1 5 5 H 1.48492 * 109.47157 * 30.00248 * 3 2 1 6 6 H 1.48502 * 109.47074 * 150.00239 * 3 2 1 7 7 C 1.38953 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99670 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00239 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00169 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00015 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99911 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.46807 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99459 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.46947 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47198 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21633 * 120.00238 * 359.72097 * 17 16 15 19 19 C 1.47160 * 119.99509 * 179.72415 * 17 16 15 20 20 C 1.36041 * 123.46794 * 0.02562 * 19 17 16 21 21 S 1.70443 * 110.82846 * 180.02562 * 20 19 17 22 22 C 1.75496 * 92.46089 * 0.02562 * 21 20 19 23 23 C 1.32851 * 110.57865 * 359.71123 * 22 21 20 24 24 Cl 1.73600 * 123.46940 * 180.28036 * 23 22 21 25 25 H 0.96999 * 120.00459 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99386 * 359.97438 * 9 7 2 27 27 H 1.08992 * 109.47001 * 59.99355 * 12 10 9 28 28 H 1.09001 * 109.46613 * 299.99743 * 12 10 9 29 29 H 1.00894 * 110.99641 * 303.95280 * 13 12 10 30 30 H 1.08995 * 109.47478 * 60.00426 * 14 13 12 31 31 H 1.09006 * 109.47065 * 299.99823 * 14 13 12 32 32 H 1.09009 * 109.46730 * 59.99875 * 15 14 13 33 33 H 1.08998 * 109.46846 * 300.00419 * 15 14 13 34 34 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 35 35 H 1.08003 * 124.58807 * 0.02562 * 20 19 17 36 36 H 1.08001 * 124.71357 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3907 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2438 -4.8630 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 1.4982 -7.2708 -0.0026 15 6 2.5231 -8.4068 -0.0038 16 7 1.8248 -9.6946 -0.0044 17 6 2.5296 -10.8434 0.0002 18 8 3.7455 -10.8109 -0.0002 19 6 1.8281 -12.1370 0.0058 20 6 0.4728 -12.2555 0.0061 21 16 0.0078 -13.8952 0.0139 22 6 1.6741 -14.4461 0.0177 23 6 2.5078 -13.4118 0.0068 24 17 4.2361 -13.5753 -0.0003 25 1 -0.4851 0.8400 0.0004 26 1 0.3535 -2.3906 -0.0016 27 1 0.6175 -4.9205 -0.8923 28 1 0.6169 -4.9209 0.8876 29 1 2.8333 -5.9120 -0.7840 30 1 0.8731 -7.3452 -0.8924 31 1 0.8736 -7.3454 0.8876 32 1 3.1487 -8.3326 0.8858 33 1 3.1474 -8.3320 -0.8942 34 1 0.8551 -9.7205 -0.0037 35 1 -0.2154 -11.4231 0.0019 36 1 1.9793 -15.4820 0.0226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130003474.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:14 Heat of formation + Delta-G solvation = -68.523728 kcal Electronic energy + Delta-G solvation = -21775.007843 eV Core-core repulsion = 18024.692582 eV Total energy + Delta-G solvation = -3750.315262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.98101 -40.15341 -38.44530 -37.41539 -36.90545 -35.99903 -35.22581 -33.27064 -31.54353 -30.04081 -27.72588 -26.20657 -25.31521 -23.25480 -22.44111 -21.10074 -20.40440 -19.92491 -19.30398 -18.22589 -17.71853 -17.24210 -16.87519 -16.56443 -16.29466 -16.05079 -15.78903 -15.39895 -14.99228 -14.89182 -14.44731 -14.37885 -14.25584 -13.92521 -13.80658 -13.51762 -13.30377 -12.93394 -12.59085 -12.57372 -12.49834 -12.42563 -12.38884 -12.12337 -11.76455 -11.51047 -10.95825 -10.36586 -10.23688 -10.01556 -10.00313 -9.37792 -9.35901 -8.46961 -5.95412 -0.35503 0.26083 0.65820 0.67513 1.38019 1.42175 1.54689 1.60676 1.97062 2.05468 2.22681 2.30516 3.02629 3.20482 3.54143 3.60772 3.83498 3.97120 4.12287 4.26901 4.32173 4.35663 4.46510 4.51146 4.61788 4.72627 4.83536 4.91226 4.97421 5.31313 5.41242 5.84904 6.07397 6.32237 6.48772 6.60332 7.12872 7.18578 7.56356 8.12207 8.70283 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.032291 B = 0.001649 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.896346 B =16980.731690 C =17819.821915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.069 3.931 13 N -0.687 5.687 14 C 0.059 3.941 15 C 0.130 3.870 16 N -0.707 5.707 17 C 0.566 3.434 18 O -0.564 6.564 19 C -0.182 4.182 20 C -0.197 4.197 21 S 0.318 5.682 22 C -0.240 4.240 23 C -0.039 4.039 24 Cl -0.047 7.047 25 H 0.278 0.722 26 H 0.398 0.602 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.346 0.654 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.416 0.584 35 H 0.210 0.790 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.521 -31.641 -0.977 33.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.063 4.063 13 N -0.320 5.320 14 C -0.070 4.070 15 C 0.006 3.994 16 N -0.360 5.360 17 C 0.352 3.648 18 O -0.444 6.444 19 C -0.200 4.200 20 C -0.335 4.335 21 S 0.583 5.417 22 C -0.376 4.376 23 C -0.077 4.077 24 Cl -0.019 7.019 25 H 0.087 0.913 26 H 0.232 0.768 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.164 0.836 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.227 0.773 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.154 -32.188 -0.292 33.466 hybrid contribution 1.192 1.802 -0.869 2.328 sum -7.963 -30.386 -1.161 31.434 Atomic orbital electron populations 1.69657 1.06715 1.29309 1.50250 1.26016 0.96574 1.02330 0.96277 0.84942 0.77862 0.76980 0.78641 1.19618 1.19445 1.19995 1.19655 0.92687 0.84126 1.49993 0.90492 1.41912 1.09375 1.04639 1.65009 1.20965 0.88276 0.86341 0.82225 1.90507 1.16078 1.87997 1.56672 1.21526 0.93711 0.87432 1.03680 1.59883 1.19422 1.00893 1.51829 1.22068 0.95171 0.86703 1.03024 1.21055 0.95024 0.81421 1.01948 1.45495 1.10933 1.04508 1.75096 1.17874 0.86661 0.84024 0.76196 1.90853 1.14958 1.87855 1.50725 1.19802 0.93390 0.92458 1.14394 1.26123 0.97621 1.06759 1.03027 1.83023 1.00896 0.92582 1.65182 1.25843 0.97865 1.03771 1.10118 1.20876 0.86644 0.93118 1.07110 1.98393 1.09020 1.97657 1.96821 0.91262 0.76810 0.90819 0.87188 0.83569 0.92276 0.88643 0.92341 0.92515 0.74674 0.77309 0.78574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.98 13.05 21.66 0.28 -48.69 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 3 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.67 16 9 N -0.57 -28.99 5.29 -306.98 -1.62 -30.61 16 10 C 0.43 20.42 7.82 87.66 0.69 21.10 16 11 O -0.63 -35.01 15.78 -3.06 -0.05 -35.06 16 12 C 0.07 2.19 6.17 85.56 0.53 2.72 16 13 N -0.69 -20.61 6.13 -517.92 -3.17 -23.78 16 14 C 0.06 1.16 5.80 86.30 0.50 1.66 16 15 C 0.13 2.87 5.93 86.38 0.51 3.38 16 16 N -0.71 -12.21 5.52 -466.61 -2.58 -14.79 16 17 C 0.57 13.24 7.79 86.59 0.67 13.92 16 18 O -0.56 -18.51 15.05 -4.14 -0.06 -18.57 16 19 C -0.18 -3.14 5.98 -19.86 -0.12 -3.26 16 20 C -0.20 -1.55 10.38 67.31 0.70 -0.85 16 21 S 0.32 1.44 23.02 -56.49 -1.30 0.14 16 22 C -0.24 -2.50 11.00 66.64 0.73 -1.77 16 23 C -0.04 -0.71 6.49 22.68 0.15 -0.57 16 24 Cl -0.05 -1.11 27.24 -2.72 -0.07 -1.18 16 25 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 26 H 0.40 18.87 7.90 -92.71 -0.73 18.13 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 29 H 0.35 11.19 8.43 -89.70 -0.76 10.44 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.42 3.71 6.97 -92.71 -0.65 3.06 16 35 H 0.21 0.14 7.01 -2.91 -0.02 0.12 16 36 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -79.04 347.19 -1.87 -80.91 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: -0.97 Total: 28.73 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 5.64 Total: 17.95 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -7.09 Total: -117.88 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -0.11 Total: -53.63 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.30 Total: 0.14 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.07 Total: -1.18 kcal Total: -79.04 -1.87 -80.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130003474.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.386 kcal (2) G-P(sol) polarization free energy of solvation -79.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds