Wall clock time and date at job start Tue Mar 31 2020 16:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 119.99934 * 2 1 4 4 H 1.48501 * 109.47178 * 239.99776 * 3 2 1 5 5 H 1.48503 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99522 * 3 2 1 7 7 C 1.38944 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00649 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00293 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99927 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99903 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47010 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99793 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46769 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.46840 * 179.97438 * 15 14 13 17 17 C 1.34779 * 119.99872 * 180.02562 * 16 15 14 18 18 O 1.21640 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.47180 * 119.99826 * 180.02562 * 17 16 15 20 20 C 1.35965 * 123.46063 * 0.03063 * 19 17 16 21 21 S 1.70446 * 110.85121 * 179.97438 * 20 19 17 22 22 C 1.75505 * 92.45054 * 359.97438 * 21 20 19 23 23 Cl 1.73602 * 124.71637 * 179.97438 * 22 21 20 24 24 C 1.32887 * 110.56317 * 359.75699 * 22 21 20 25 25 H 0.97003 * 120.00211 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99803 * 0.02562 * 9 7 2 27 27 H 1.09006 * 109.47061 * 60.01026 * 12 10 9 28 28 H 1.08995 * 109.47155 * 300.00263 * 12 10 9 29 29 H 1.00899 * 110.99995 * 303.95651 * 13 12 10 30 30 H 1.09001 * 109.46874 * 60.00179 * 14 13 12 31 31 H 1.08992 * 109.47407 * 300.00197 * 14 13 12 32 32 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 33 33 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 34 34 H 0.97000 * 120.00420 * 0.02562 * 16 15 14 35 35 H 1.08000 * 124.57411 * 359.97438 * 20 19 17 36 36 H 1.08002 * 123.47102 * 180.21366 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1984 -5.9795 0.0007 14 6 1.4980 -7.2708 -0.0005 15 6 2.5230 -8.4068 -0.0003 16 7 1.8246 -9.6946 -0.0008 17 6 2.5294 -10.8434 -0.0003 18 8 3.7454 -10.8110 0.0012 19 6 1.8277 -12.1372 -0.0014 20 6 0.4732 -12.2554 -0.0036 21 16 0.0073 -13.8950 -0.0050 22 6 1.6735 -14.4464 -0.0034 23 17 2.1637 -16.1118 -0.0031 24 6 2.5076 -13.4119 -0.0071 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3907 -0.0002 27 1 0.6175 -4.9205 -0.8904 28 1 0.6167 -4.9208 0.8896 29 1 2.8339 -5.9124 -0.7801 30 1 0.8742 -7.3450 -0.8912 31 1 0.8722 -7.3455 0.8887 32 1 3.1486 -8.3319 -0.8898 33 1 3.1472 -8.3328 0.8902 34 1 0.8549 -9.7205 -0.0016 35 1 -0.2146 -11.4228 -0.0043 36 1 3.5828 -13.5137 -0.0103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134807072.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:44 Heat of formation + Delta-G solvation = -44.272487 kcal Electronic energy + Delta-G solvation = -21514.789837 eV Core-core repulsion = 17765.526188 eV Total energy + Delta-G solvation = -3749.263649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24870 -38.36980 -37.84342 -36.86376 -36.27613 -34.47252 -33.78477 -31.27521 -30.67422 -29.04076 -26.32860 -25.25807 -23.89622 -22.34786 -21.78292 -19.79440 -19.33597 -18.85495 -17.92141 -17.54505 -16.30906 -16.09061 -15.93532 -15.39223 -15.28501 -14.60588 -14.38183 -14.30672 -14.17807 -13.87898 -13.76030 -13.45370 -13.19689 -13.17145 -12.48249 -12.14628 -12.08636 -11.95055 -11.55267 -11.50279 -11.46667 -11.31328 -11.02715 -10.45350 -10.30324 -10.22902 -9.52180 -9.47445 -9.39400 -9.02569 -8.53633 -8.16774 -7.98768 -6.43834 -3.84771 0.06595 0.45849 1.15187 1.34197 1.60626 2.78339 2.96688 3.19307 3.25105 3.29773 3.87521 4.09430 4.19783 4.33478 4.48375 4.66580 4.81959 4.93455 5.05451 5.14170 5.21621 5.24049 5.32566 5.53734 5.68387 5.77004 5.85391 5.90618 6.08118 6.22176 7.03859 7.15314 7.52550 7.53349 7.87690 8.03603 8.58573 9.15591 9.51306 10.02698 10.73739 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.049243 B = 0.001471 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.471051 B =19032.354471 C =19573.051328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.582 6.582 12 C 0.053 3.947 13 N -0.665 5.665 14 C 0.049 3.951 15 C 0.120 3.880 16 N -0.721 5.721 17 C 0.577 3.423 18 O -0.528 6.528 19 C -0.142 4.142 20 C -0.210 4.210 21 S 0.242 5.758 22 C -0.174 4.174 23 Cl -0.008 7.008 24 C -0.068 4.068 25 H 0.272 0.728 26 H 0.392 0.608 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.353 0.647 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.398 0.602 35 H 0.179 0.821 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 -30.374 -0.935 31.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.298 5.298 14 C -0.081 4.081 15 C -0.003 4.003 16 N -0.373 5.373 17 C 0.362 3.638 18 O -0.405 6.405 19 C -0.160 4.160 20 C -0.348 4.348 21 S 0.506 5.494 22 C -0.317 4.317 23 Cl 0.020 6.980 24 C -0.098 4.098 25 H 0.082 0.918 26 H 0.225 0.775 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.173 0.827 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.232 0.768 35 H 0.197 0.803 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.974 -31.037 -0.256 31.608 hybrid contribution 0.259 1.505 -0.890 1.768 sum -5.714 -29.532 -1.146 30.102 Atomic orbital electron populations 1.69604 1.05944 1.28297 1.50480 1.25262 0.95642 0.99743 0.97222 0.85903 0.78754 0.80367 0.79114 1.19904 1.20974 1.19849 1.19671 0.93397 0.82226 1.47756 0.87919 1.41843 1.09184 1.04579 1.64297 1.19765 0.88400 0.84685 0.84704 1.90536 1.13715 1.87005 1.55349 1.21672 0.94209 0.90809 1.01323 1.59938 1.18798 0.99388 1.51705 1.22079 0.95536 0.89460 1.01031 1.21339 0.94992 0.80181 1.03805 1.45724 1.10218 1.05831 1.75571 1.17424 0.86837 0.82836 0.76743 1.90846 1.13124 1.87351 1.49168 1.20043 0.92034 0.94262 1.09687 1.25825 0.99236 1.03585 1.06181 1.83247 1.02318 0.94854 1.68956 1.25117 0.98853 0.90856 1.16862 1.98390 1.90637 1.11746 1.97223 1.21174 1.01777 0.88450 0.98435 0.91809 0.77460 0.93700 0.89457 0.82736 0.94894 0.90418 0.91001 0.89828 0.76754 0.80350 0.81814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 9 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 10 C 0.44 10.20 7.82 -10.99 -0.09 10.12 16 11 O -0.58 -15.73 15.78 5.55 0.09 -15.64 16 12 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 13 N -0.67 -10.17 6.13 -115.05 -0.70 -10.87 16 14 C 0.05 0.52 5.80 -3.82 -0.02 0.50 16 15 C 0.12 1.30 5.93 -4.04 -0.02 1.27 16 16 N -0.72 -6.31 5.52 -61.46 -0.34 -6.65 16 17 C 0.58 6.33 7.79 -12.63 -0.10 6.23 16 18 O -0.53 -7.98 16.80 5.24 0.09 -7.89 16 19 C -0.14 -1.19 5.98 -104.63 -0.63 -1.82 16 20 C -0.21 -1.13 10.38 29.92 0.31 -0.82 16 21 S 0.24 1.21 23.02 -107.50 -2.47 -1.27 16 22 C -0.17 -1.25 7.01 28.89 0.20 -1.04 16 23 Cl -0.01 -0.06 29.27 -51.86 -1.52 -1.58 16 24 C -0.07 -0.57 10.04 -38.98 -0.39 -0.97 16 25 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.35 5.62 8.43 -39.29 -0.33 5.28 16 30 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.40 2.18 6.97 -40.82 -0.28 1.89 16 35 H 0.18 0.44 7.01 -52.49 -0.37 0.07 16 36 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -33.69 350.50 -8.72 -42.40 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -3.78 Total: 11.61 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -1.01 Total: 6.34 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.38 Total: -55.17 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.18 Total: -23.53 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.47 Total: -1.27 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.52 Total: -1.58 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.69 -8.72 -42.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134807072.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.869 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds