Wall clock time and date at job start Tue Mar 31 2020 16:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 119.99934 * 2 1 4 4 H 1.48501 * 109.47178 * 239.99776 * 3 2 1 5 5 H 1.48503 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99522 * 3 2 1 7 7 C 1.38944 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00649 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00293 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99927 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99903 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47010 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99793 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46769 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.46840 * 179.97438 * 15 14 13 17 17 C 1.34779 * 119.99872 * 180.02562 * 16 15 14 18 18 O 1.21640 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.47180 * 119.99826 * 180.02562 * 17 16 15 20 20 C 1.35965 * 123.46063 * 0.03063 * 19 17 16 21 21 S 1.70446 * 110.85121 * 179.97438 * 20 19 17 22 22 C 1.75505 * 92.45054 * 359.97438 * 21 20 19 23 23 Cl 1.73602 * 124.71637 * 179.97438 * 22 21 20 24 24 C 1.32887 * 110.56317 * 359.75699 * 22 21 20 25 25 H 0.97003 * 120.00211 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99803 * 0.02562 * 9 7 2 27 27 H 1.09006 * 109.47061 * 60.01026 * 12 10 9 28 28 H 1.08995 * 109.47155 * 300.00263 * 12 10 9 29 29 H 1.00899 * 110.99995 * 303.95651 * 13 12 10 30 30 H 1.09001 * 109.46874 * 60.00179 * 14 13 12 31 31 H 1.08992 * 109.47407 * 300.00197 * 14 13 12 32 32 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 33 33 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 34 34 H 0.97000 * 120.00420 * 0.02562 * 16 15 14 35 35 H 1.08000 * 124.57411 * 359.97438 * 20 19 17 36 36 H 1.08002 * 123.47102 * 180.21366 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1984 -5.9795 0.0007 14 6 1.4980 -7.2708 -0.0005 15 6 2.5230 -8.4068 -0.0003 16 7 1.8246 -9.6946 -0.0008 17 6 2.5294 -10.8434 -0.0003 18 8 3.7454 -10.8110 0.0012 19 6 1.8277 -12.1372 -0.0014 20 6 0.4732 -12.2554 -0.0036 21 16 0.0073 -13.8950 -0.0050 22 6 1.6735 -14.4464 -0.0034 23 17 2.1637 -16.1118 -0.0031 24 6 2.5076 -13.4119 -0.0071 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3907 -0.0002 27 1 0.6175 -4.9205 -0.8904 28 1 0.6167 -4.9208 0.8896 29 1 2.8339 -5.9124 -0.7801 30 1 0.8742 -7.3450 -0.8912 31 1 0.8722 -7.3455 0.8887 32 1 3.1486 -8.3319 -0.8898 33 1 3.1472 -8.3328 0.8902 34 1 0.8549 -9.7205 -0.0016 35 1 -0.2146 -11.4228 -0.0043 36 1 3.5828 -13.5137 -0.0103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134807072.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:43 Heat of formation + Delta-G solvation = -71.000993 kcal Electronic energy + Delta-G solvation = -21515.948872 eV Core-core repulsion = 17765.526188 eV Total energy + Delta-G solvation = -3750.422684 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.04366 -40.14533 -38.45476 -37.57235 -37.25299 -36.00408 -35.27488 -33.26344 -31.46491 -29.97043 -27.73369 -26.23854 -25.29711 -23.25111 -22.53417 -21.09418 -20.48541 -19.91885 -19.41798 -18.25121 -17.71545 -17.24634 -16.94971 -16.56165 -16.30036 -16.03071 -15.83629 -15.38941 -15.03842 -14.96974 -14.63810 -14.56216 -14.27549 -13.97822 -13.77899 -13.50612 -13.30166 -12.93282 -12.67488 -12.65930 -12.57202 -12.42838 -12.39038 -12.11784 -11.84039 -11.49890 -11.16649 -10.35796 -10.26834 -10.00896 -9.96656 -9.51073 -9.37110 -8.46191 -5.94788 -0.44617 -0.01573 0.65344 0.68468 1.08605 1.40538 1.42787 1.53290 1.99004 2.06461 2.21072 2.31155 3.03514 3.21350 3.56160 3.76239 3.83053 3.95771 4.12077 4.14464 4.32921 4.46941 4.50122 4.52446 4.62784 4.70032 4.88834 4.92477 4.98699 5.27803 5.41536 5.85410 6.07887 6.33113 6.44987 6.61038 7.12792 7.13454 7.57103 8.12975 8.70756 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.049243 B = 0.001471 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.471051 B =19032.354471 C =19573.051328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.069 3.931 13 N -0.687 5.687 14 C 0.059 3.941 15 C 0.128 3.872 16 N -0.704 5.704 17 C 0.575 3.425 18 O -0.583 6.583 19 C -0.173 4.173 20 C -0.189 4.189 21 S 0.308 5.692 22 C -0.189 4.189 23 Cl -0.011 7.011 24 C -0.085 4.085 25 H 0.278 0.722 26 H 0.398 0.602 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.346 0.654 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.417 0.583 35 H 0.214 0.786 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.251 -30.991 -1.025 32.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.063 4.063 13 N -0.320 5.320 14 C -0.071 4.071 15 C 0.003 3.997 16 N -0.357 5.357 17 C 0.362 3.638 18 O -0.464 6.464 19 C -0.191 4.191 20 C -0.328 4.328 21 S 0.573 5.427 22 C -0.332 4.332 23 Cl 0.018 6.982 24 C -0.116 4.116 25 H 0.087 0.913 26 H 0.232 0.768 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.164 0.836 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.256 0.744 35 H 0.231 0.769 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.013 -31.679 -0.343 32.938 hybrid contribution 1.108 1.583 -0.859 2.114 sum -7.905 -30.096 -1.202 31.140 Atomic orbital electron populations 1.69656 1.06722 1.29364 1.50159 1.25998 0.96546 1.02288 0.96209 0.85010 0.77791 0.76781 0.78880 1.19784 1.19387 1.19873 1.19633 0.92719 0.84166 1.50158 0.90463 1.41903 1.09362 1.04633 1.64995 1.20966 0.88282 0.86339 0.82238 1.90506 1.16067 1.87997 1.56695 1.21526 0.93715 0.87433 1.03676 1.59900 1.19355 1.00879 1.51868 1.22076 0.95177 0.86692 1.03104 1.21099 0.95088 0.81365 1.02134 1.45488 1.11081 1.04533 1.74586 1.17839 0.86351 0.84027 0.75603 1.90814 1.15533 1.88130 1.51914 1.19741 0.93133 0.92740 1.13443 1.26267 0.98413 1.05445 1.02647 1.83111 0.99485 0.93388 1.66764 1.25294 1.00477 0.90547 1.16880 1.98387 1.90941 1.11694 1.97227 1.21129 1.01481 0.89352 0.99662 0.91268 0.76824 0.90812 0.87205 0.83552 0.92205 0.88584 0.92327 0.92169 0.74449 0.76892 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.69 13.05 21.66 0.28 -48.41 16 2 C -0.01 -0.55 5.50 84.92 0.47 -0.08 16 3 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.34 -19.04 9.68 84.04 0.81 -18.22 16 8 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 9 N -0.57 -28.73 5.29 -306.99 -1.62 -30.35 16 10 C 0.43 20.18 7.82 87.66 0.69 20.86 16 11 O -0.63 -34.64 15.78 -3.06 -0.05 -34.69 16 12 C 0.07 2.15 6.17 85.56 0.53 2.68 16 13 N -0.69 -20.02 6.13 -517.92 -3.17 -23.20 16 14 C 0.06 1.08 5.80 86.30 0.50 1.58 16 15 C 0.13 2.66 5.93 86.38 0.51 3.17 16 16 N -0.70 -11.17 5.52 -466.59 -2.58 -13.75 16 17 C 0.58 12.56 7.79 86.59 0.67 13.24 16 18 O -0.58 -18.63 16.80 -4.16 -0.07 -18.70 16 19 C -0.17 -2.74 5.98 -19.87 -0.12 -2.86 16 20 C -0.19 -1.43 10.38 67.29 0.70 -0.73 16 21 S 0.31 2.12 23.02 -56.49 -1.30 0.82 16 22 C -0.19 -2.52 7.01 66.64 0.47 -2.06 16 23 Cl -0.01 -0.14 29.27 -2.72 -0.08 -0.22 16 24 C -0.09 -1.47 10.04 22.68 0.23 -1.24 16 25 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 26 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 27 H 0.07 1.92 8.14 -2.38 -0.02 1.91 16 28 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.35 10.89 8.43 -89.69 -0.76 10.13 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.42 3.11 6.97 -92.71 -0.65 2.46 16 35 H 0.21 -0.04 7.01 -2.91 -0.02 -0.06 16 36 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -76.33 350.50 -2.07 -78.40 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: -0.97 Total: 29.09 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 5.46 Total: 16.34 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -7.09 Total: -115.70 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: -0.12 Total: -53.39 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.30 Total: 0.82 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -76.33 -2.07 -78.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134807072.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.400 kcal (2) G-P(sol) polarization free energy of solvation -76.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds