Wall clock time and date at job start Tue Mar 31 2020 16:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86802 * 119.99829 * 2 1 4 4 H 1.48500 * 109.47049 * 240.00242 * 3 2 1 5 5 H 1.48492 * 109.47066 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46841 * 120.00479 * 3 2 1 7 7 C 1.38953 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99670 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00239 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00169 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00015 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99911 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.46807 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99459 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.46947 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47198 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21653 * 120.00225 * 359.72103 * 17 16 15 19 19 C 1.47044 * 119.99524 * 179.72422 * 17 16 15 20 20 C 1.44508 * 123.49530 * 359.72735 * 19 17 16 21 21 C 1.32693 * 113.09707 * 179.80820 * 20 19 17 22 22 S 1.75494 * 110.63325 * 0.44158 * 21 20 19 23 23 C 1.36230 * 123.48923 * 180.02562 * 19 17 16 24 24 Cl 1.73601 * 124.60516 * 359.97438 * 23 19 17 25 25 H 0.96999 * 120.00459 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99386 * 359.97438 * 9 7 2 27 27 H 1.08992 * 109.47001 * 59.99355 * 12 10 9 28 28 H 1.09001 * 109.46613 * 299.99743 * 12 10 9 29 29 H 1.00894 * 110.99641 * 303.95280 * 13 12 10 30 30 H 1.08995 * 109.47478 * 60.00426 * 14 13 12 31 31 H 1.09006 * 109.47065 * 299.99823 * 14 13 12 32 32 H 1.09009 * 109.46730 * 59.99875 * 15 14 13 33 33 H 1.08998 * 109.46846 * 300.00419 * 15 14 13 34 34 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 35 35 H 1.08000 * 123.44609 * 359.97438 * 20 19 17 36 36 H 1.07998 * 124.68476 * 180.18004 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3907 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2438 -4.8630 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 1.4982 -7.2708 -0.0026 15 6 2.5231 -8.4068 -0.0038 16 7 1.8248 -9.6946 -0.0044 17 6 2.5296 -10.8434 0.0002 18 8 3.7457 -10.8109 -0.0002 19 6 1.8286 -12.1360 0.0058 20 6 0.3891 -12.2625 0.0124 21 6 -0.0226 -13.5239 0.0125 22 16 1.3468 -14.6214 0.0171 23 6 2.4690 -13.3384 0.0111 24 17 4.1936 -13.5369 0.0117 25 1 -0.4851 0.8400 0.0004 26 1 0.3535 -2.3906 -0.0016 27 1 0.6175 -4.9205 -0.8923 28 1 0.6169 -4.9209 0.8876 29 1 2.8333 -5.9120 -0.7840 30 1 0.8731 -7.3452 -0.8924 31 1 0.8736 -7.3454 0.8876 32 1 3.1487 -8.3326 0.8858 33 1 3.1474 -8.3320 -0.8942 34 1 0.8551 -9.7205 -0.0037 35 1 -0.2827 -11.4169 0.0141 36 1 -1.0575 -13.8326 0.0141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134813070.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:58 Heat of formation + Delta-G solvation = -67.184862 kcal Electronic energy + Delta-G solvation = -21785.477160 eV Core-core repulsion = 18035.219956 eV Total energy + Delta-G solvation = -3750.257204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00169 -40.14903 -38.30953 -37.49190 -37.36668 -35.99576 -35.20121 -33.26517 -30.99090 -30.35579 -27.90787 -26.23909 -24.98496 -23.05591 -22.65979 -21.09551 -20.52980 -19.91696 -19.49957 -18.05646 -17.62854 -17.21927 -16.99412 -16.58819 -16.30703 -16.01816 -15.55980 -15.41425 -14.99284 -14.91035 -14.65933 -14.44234 -14.25470 -14.03556 -13.91861 -13.50844 -13.29762 -12.92829 -12.61895 -12.58072 -12.43280 -12.39274 -12.12117 -12.10298 -12.05824 -11.50297 -10.97062 -10.36151 -10.23337 -10.01343 -9.85200 -9.53886 -9.37242 -8.46445 -5.94993 -0.50202 0.00285 0.70628 0.92549 1.17842 1.40170 1.42289 1.52943 2.04451 2.06463 2.22637 2.31143 3.04195 3.20961 3.54916 3.69193 3.87464 3.97135 4.11877 4.22869 4.32801 4.47281 4.51834 4.62444 4.70522 4.90968 4.95298 4.96040 5.11122 5.31947 5.41302 5.85301 6.07710 6.32807 6.48344 6.60735 7.13093 7.16620 7.56728 8.12586 8.70556 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.037032 B = 0.001628 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.925651 B =17190.575912 C =17918.674610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.336 4.336 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.069 3.931 13 N -0.687 5.687 14 C 0.059 3.941 15 C 0.129 3.871 16 N -0.704 5.704 17 C 0.566 3.434 18 O -0.565 6.565 19 C -0.170 4.170 20 C -0.108 4.108 21 C -0.210 4.210 22 S 0.264 5.736 23 C -0.155 4.155 24 Cl -0.006 7.006 25 H 0.278 0.722 26 H 0.398 0.602 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.346 0.654 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.417 0.583 35 H 0.186 0.814 36 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.789 -31.785 -0.959 32.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.466 4.466 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.064 4.064 13 N -0.320 5.320 14 C -0.070 4.070 15 C 0.005 3.995 16 N -0.357 5.357 17 C 0.352 3.648 18 O -0.445 6.445 19 C -0.190 4.190 20 C -0.136 4.136 21 C -0.345 4.345 22 S 0.529 5.471 23 C -0.302 4.302 24 Cl 0.023 6.977 25 H 0.087 0.913 26 H 0.232 0.768 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.164 0.836 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.255 0.745 35 H 0.203 0.797 36 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.914 -33.156 -0.273 33.871 hybrid contribution -0.264 2.595 -0.865 2.748 sum -7.179 -30.561 -1.138 31.414 Atomic orbital electron populations 1.69652 1.06718 1.29380 1.50163 1.26017 0.96575 1.02335 0.96256 0.85003 0.77786 0.76754 0.78883 1.19771 1.19360 1.19875 1.19623 0.92698 0.84134 1.50107 0.90474 1.41908 1.09373 1.04635 1.64996 1.20963 0.88277 0.86337 0.82239 1.90505 1.16072 1.87997 1.56695 1.21526 0.93714 0.87434 1.03682 1.59885 1.19423 1.00896 1.51815 1.22068 0.95169 0.86683 1.03052 1.21065 0.95038 0.81462 1.01942 1.45506 1.11057 1.04447 1.74705 1.17843 0.86561 0.84110 0.76313 1.90859 1.14902 1.87910 1.50864 1.20422 0.95051 0.91994 1.11549 1.21335 0.90785 0.99595 1.01877 1.26042 1.04497 0.95629 1.08323 1.83195 0.91652 1.04501 1.67789 1.25714 0.92587 1.01030 1.10861 1.98411 1.05915 1.96951 1.96406 0.91252 0.76811 0.90824 0.87190 0.83580 0.92266 0.88631 0.92321 0.92500 0.74484 0.79687 0.76849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.01 13.05 21.66 0.28 -48.73 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 3 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.57 -29.01 5.29 -306.98 -1.62 -30.63 16 10 C 0.43 20.43 7.82 87.66 0.69 21.12 16 11 O -0.63 -35.01 15.78 -3.06 -0.05 -35.06 16 12 C 0.07 2.20 6.17 85.56 0.53 2.73 16 13 N -0.69 -20.65 6.13 -517.92 -3.17 -23.82 16 14 C 0.06 1.17 5.80 86.30 0.50 1.67 16 15 C 0.13 2.87 5.93 86.38 0.51 3.38 16 16 N -0.70 -12.34 5.53 -466.72 -2.58 -14.92 16 17 C 0.57 13.27 7.79 86.55 0.67 13.95 16 18 O -0.57 -18.37 14.91 -4.20 -0.06 -18.43 16 19 C -0.17 -2.99 5.98 -19.84 -0.12 -3.11 16 20 C -0.11 -0.91 9.90 22.70 0.22 -0.68 16 21 C -0.21 -1.08 11.11 66.65 0.74 -0.34 16 22 S 0.26 2.46 23.02 -56.49 -1.30 1.16 16 23 C -0.16 -2.81 6.87 67.35 0.46 -2.35 16 24 Cl -0.01 -0.13 27.20 -2.72 -0.07 -0.20 16 25 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 26 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 28 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.35 11.20 8.43 -89.70 -0.76 10.44 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.42 3.96 7.02 -92.71 -0.65 3.31 16 35 H 0.19 0.34 7.10 -2.91 -0.02 0.32 16 36 H 0.21 -0.46 8.06 -2.91 -0.02 -0.49 16 Total: -1.00 -77.98 347.16 -2.03 -80.02 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: -0.97 Total: 27.75 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: 5.49 Total: 17.91 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -7.10 Total: -118.10 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -0.11 Total: -53.49 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.30 Total: 1.16 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -0.07 Total: -0.20 kcal Total: -77.98 -2.03 -80.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134813070.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.831 kcal (2) G-P(sol) polarization free energy of solvation -77.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds