Wall clock time and date at job start Tue Mar 31 2020 16:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47332 * 2 1 4 4 C 1.33287 * 120.00207 * 262.88996 * 3 2 1 5 5 H 1.07996 * 120.00060 * 188.69763 * 4 3 2 6 6 C 1.46794 * 119.99886 * 8.69099 * 4 3 2 7 7 N 1.29314 * 119.99546 * 23.47973 * 6 4 3 8 8 Si 1.86796 * 119.99973 * 203.47417 * 6 4 3 9 9 H 1.48499 * 109.46973 * 94.99766 * 8 6 4 10 10 H 1.48509 * 109.46946 * 214.99644 * 8 6 4 11 11 H 1.48500 * 109.47112 * 334.99586 * 8 6 4 12 12 C 1.34778 * 119.99812 * 82.88630 * 3 2 1 13 13 O 1.21547 * 119.99862 * 185.70646 * 12 3 2 14 14 C 1.47117 * 119.99981 * 5.70295 * 12 3 2 15 15 C 1.39938 * 120.19179 * 53.99746 * 14 12 3 16 16 C 1.37658 * 119.93158 * 179.97438 * 15 14 12 17 17 Cl 1.73602 * 119.83860 * 179.97438 * 16 15 14 18 18 C 1.39057 * 120.31835 * 359.97438 * 16 15 14 19 19 F 1.35094 * 119.81048 * 179.97438 * 18 16 15 20 20 C 1.38233 * 120.38130 * 0.02562 * 18 16 15 21 21 N 1.48013 * 119.97016 * 180.02562 * 20 18 16 22 22 O 1.31706 * 119.99875 * 89.99717 * 21 20 18 23 23 O 1.31695 * 120.00059 * 270.00345 * 21 20 18 24 24 C 1.38830 * 120.06054 * 359.97438 * 20 18 16 25 25 N 1.38846 * 120.15412 * 179.97438 * 24 20 18 26 26 H 1.08999 * 109.46849 * 60.00301 * 1 2 3 27 27 H 1.09002 * 109.46928 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47022 * 299.99692 * 1 2 3 29 29 H 1.08997 * 109.47588 * 239.99813 * 2 1 3 30 30 H 1.09001 * 109.47331 * 119.99901 * 2 1 3 31 31 H 0.97004 * 119.99320 * 179.97438 * 7 6 4 32 32 H 1.08002 * 120.03229 * 0.25074 * 15 14 12 33 33 H 0.97002 * 120.00876 * 355.67573 * 25 24 20 34 34 H 0.97010 * 119.99793 * 175.67097 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3752 1.9619 -1.1454 5 1 2.8651 2.9243 -1.1332 6 6 2.1026 1.2933 -2.4234 7 7 1.1576 0.4143 -2.5045 8 14 3.1205 1.7123 -3.9326 9 1 4.2329 0.7376 -4.0656 10 1 2.2610 1.6506 -5.1421 11 1 3.6766 3.0818 -3.7899 12 6 2.1067 2.0647 1.1582 13 8 2.4122 3.2411 1.1479 14 6 1.8334 1.3869 2.4350 15 6 2.5172 0.2125 2.7688 16 6 2.2576 -0.4171 3.9652 17 17 3.1068 -1.8742 4.3766 18 6 1.3184 0.1086 4.8457 19 9 1.0713 -0.5179 6.0168 20 6 0.6354 1.2679 4.5292 21 7 -0.3620 1.8198 5.4734 22 8 0.0112 2.6834 6.3951 23 8 -1.6225 1.4471 5.3920 24 6 0.8848 1.9158 3.3269 25 7 0.1995 3.0801 3.0068 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.9772 -0.0273 -3.3491 32 1 3.2511 -0.1971 2.0905 33 1 -0.4995 3.4086 3.5937 34 1 0.4197 3.5652 2.1960 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142138004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:21 Heat of formation + Delta-G solvation = -5.654885 kcal Electronic energy + Delta-G solvation = -26733.354065 eV Core-core repulsion = 22419.551825 eV Total energy + Delta-G solvation = -4313.802240 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.057 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -49.44544 -40.59274 -39.02362 -37.88559 -36.79479 -35.48201 -34.57887 -34.44560 -32.62015 -31.59278 -29.85729 -29.26166 -26.64861 -25.43470 -23.45866 -22.73922 -22.33067 -20.13697 -18.67300 -18.32655 -18.29129 -18.05223 -17.31754 -16.41907 -16.14217 -15.96937 -15.62092 -15.37318 -15.18529 -14.62687 -14.41395 -13.76327 -13.46225 -13.33166 -13.12242 -12.70381 -12.55856 -12.47272 -12.21623 -11.69465 -11.52099 -11.43989 -11.34251 -11.17099 -11.05662 -10.74958 -10.63741 -10.52194 -10.50420 -10.19123 -9.46862 -9.28884 -8.74010 -8.40622 -7.95793 -6.98182 -3.95959 -0.38401 0.33227 0.80992 0.89761 1.88858 2.70287 2.92096 2.98857 3.02334 3.18425 3.57770 3.72737 3.75565 4.21170 4.38695 4.53973 4.75414 4.82942 5.01262 5.28168 5.54686 5.63771 5.74951 5.87051 6.11988 6.23031 6.28768 6.51139 6.53293 6.73545 6.90973 6.96219 7.24539 7.38755 7.63565 8.04283 8.74106 8.99646 9.69154 9.98548 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.004388 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.176545 B = 6380.126906 C = 7300.187707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.097 3.903 3 N -0.378 5.378 4 C -0.335 4.335 5 H 0.118 0.882 6 C 0.043 3.957 7 N -0.809 5.809 8 Si 0.931 3.069 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.261 1.261 12 C 0.426 3.574 13 O -0.599 6.599 14 C -0.130 4.130 15 C -0.001 4.001 16 C -0.115 4.115 17 Cl -0.037 7.037 18 C 0.188 3.812 19 F -0.113 7.113 20 C -0.114 4.114 21 N -0.025 5.025 22 O -0.132 6.132 23 O -0.134 6.134 24 C 0.327 3.673 25 N -0.832 5.832 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.025 0.975 29 H 0.107 0.893 30 H 0.046 0.954 31 H 0.283 0.717 32 H 0.162 0.838 33 H 0.400 0.600 34 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.080 -4.648 5.658 7.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 N -0.088 5.088 4 C -0.464 4.464 5 H 0.135 0.865 6 C -0.172 4.172 7 N -0.441 5.441 8 Si 0.756 3.244 9 H -0.196 1.196 10 H -0.205 1.205 11 H -0.184 1.184 12 C 0.218 3.782 13 O -0.490 6.490 14 C -0.140 4.140 15 C -0.022 4.022 16 C -0.146 4.146 17 Cl -0.008 7.008 18 C 0.165 3.835 19 F -0.091 7.091 20 C -0.204 4.204 21 N 0.472 4.528 22 O -0.338 6.338 23 O -0.339 6.339 24 C 0.210 3.790 25 N -0.369 5.369 26 H 0.106 0.894 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.125 0.875 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.179 0.821 33 H 0.228 0.772 34 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 0.672 -4.646 4.982 6.845 hybrid contribution -0.279 0.094 -0.133 0.323 sum 0.393 -4.552 4.849 6.662 Atomic orbital electron populations 1.22024 0.95945 1.00556 1.01863 1.21916 0.95267 0.83637 1.01784 1.42795 1.49347 1.10900 1.05806 1.20825 1.36929 1.07032 0.81620 0.86476 1.26975 0.95218 0.95276 0.99691 1.69099 1.23823 1.22976 1.28240 0.85812 0.79685 0.80193 0.78719 1.19640 1.20518 1.18433 1.16773 0.92325 0.86854 0.82234 1.90613 1.57287 1.15181 1.85880 1.19725 0.99363 0.97148 0.97763 1.21185 0.96345 0.91828 0.92887 1.20116 1.01882 0.95390 0.97187 1.98380 1.75641 1.33275 1.93548 1.16312 0.95158 0.89194 0.82855 1.91590 1.92768 1.80860 1.43917 1.19071 1.04908 1.02572 0.93850 1.50003 1.02897 0.99306 1.00613 1.96295 1.85847 1.25297 1.26355 1.96294 0.96902 1.62495 1.78239 1.16888 0.88808 0.85845 0.87443 1.42700 1.39430 1.24547 1.30189 0.89437 0.93576 0.95541 0.87464 0.93620 0.90419 0.82075 0.77172 0.73416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.68 37.16 0.36 -2.35 16 2 C 0.10 1.85 5.05 -4.04 -0.02 1.83 16 3 N -0.38 -8.24 2.54 -114.59 -0.29 -8.53 16 4 C -0.34 -7.92 9.66 -13.46 -0.13 -8.05 16 5 H 0.12 2.98 7.34 -52.49 -0.39 2.60 16 6 C 0.04 0.94 5.08 -15.15 -0.08 0.86 16 7 N -0.81 -17.18 8.73 56.00 0.49 -16.69 16 8 Si 0.93 17.18 29.69 -169.99 -5.05 12.13 16 9 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 10 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 11 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 12 C 0.43 9.16 6.36 -12.66 -0.08 9.08 16 13 O -0.60 -14.74 15.34 5.32 0.08 -14.66 16 14 C -0.13 -2.34 4.66 -104.79 -0.49 -2.83 16 15 C 0.00 -0.02 7.38 -39.16 -0.29 -0.31 16 16 C -0.12 -1.68 6.32 -39.49 -0.25 -1.93 16 17 Cl -0.04 -0.48 28.59 -51.86 -1.48 -1.96 16 18 C 0.19 2.95 7.27 -39.28 -0.29 2.67 16 19 F -0.11 -1.78 16.63 2.25 0.04 -1.74 16 20 C -0.11 -1.90 6.29 -79.73 -0.50 -2.40 16 21 N -0.03 -0.43 3.82 34.07 0.13 -0.30 16 22 O -0.13 -2.28 19.97 -31.57 -0.63 -2.91 16 23 O -0.13 -2.30 19.97 -31.56 -0.63 -2.93 16 24 C 0.33 5.59 6.75 -83.60 -0.56 5.02 16 25 N -0.83 -13.31 8.93 32.55 0.29 -13.02 16 26 H 0.09 1.83 6.53 -51.93 -0.34 1.49 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.03 0.48 7.81 -51.93 -0.41 0.07 16 29 H 0.11 2.17 5.69 -51.93 -0.30 1.87 16 30 H 0.05 0.76 4.49 -51.93 -0.23 0.53 16 31 H 0.28 5.59 8.26 -40.82 -0.34 5.25 16 32 H 0.16 2.26 7.26 -52.49 -0.38 1.88 16 33 H 0.40 5.66 8.07 -40.82 -0.33 5.33 16 34 H 0.43 7.38 6.81 -40.82 -0.28 7.10 16 LS Contribution 320.45 15.07 4.83 4.83 Total: -1.00 -24.78 320.45 -6.75 -31.53 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -2.20 Total: 12.65 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.33 Total: 1.60 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.62 Total: -38.55 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -1.18 Total: -20.49 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.05 Total: 12.13 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.48 Total: -1.96 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -24.78 -6.75 -31.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142138004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.879 kcal (2) G-P(sol) polarization free energy of solvation -24.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds