Wall clock time and date at job start Tue Mar 31 2020 16:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47332 * 2 1 4 4 C 1.33287 * 120.00207 * 262.88996 * 3 2 1 5 5 H 1.07996 * 120.00060 * 188.69763 * 4 3 2 6 6 C 1.46794 * 119.99886 * 8.69099 * 4 3 2 7 7 N 1.29314 * 119.99546 * 23.47973 * 6 4 3 8 8 Si 1.86796 * 119.99973 * 203.47417 * 6 4 3 9 9 H 1.48499 * 109.46973 * 94.99766 * 8 6 4 10 10 H 1.48509 * 109.46946 * 214.99644 * 8 6 4 11 11 H 1.48500 * 109.47112 * 334.99586 * 8 6 4 12 12 C 1.34778 * 119.99812 * 82.88630 * 3 2 1 13 13 O 1.21547 * 119.99862 * 185.70646 * 12 3 2 14 14 C 1.47117 * 119.99981 * 5.70295 * 12 3 2 15 15 C 1.39938 * 120.19179 * 53.99746 * 14 12 3 16 16 C 1.37658 * 119.93158 * 179.97438 * 15 14 12 17 17 Cl 1.73602 * 119.83860 * 179.97438 * 16 15 14 18 18 C 1.39057 * 120.31835 * 359.97438 * 16 15 14 19 19 F 1.35094 * 119.81048 * 179.97438 * 18 16 15 20 20 C 1.38233 * 120.38130 * 0.02562 * 18 16 15 21 21 N 1.48013 * 119.97016 * 180.02562 * 20 18 16 22 22 O 1.31706 * 119.99875 * 89.99717 * 21 20 18 23 23 O 1.31695 * 120.00059 * 270.00345 * 21 20 18 24 24 C 1.38830 * 120.06054 * 359.97438 * 20 18 16 25 25 N 1.38846 * 120.15412 * 179.97438 * 24 20 18 26 26 H 1.08999 * 109.46849 * 60.00301 * 1 2 3 27 27 H 1.09002 * 109.46928 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47022 * 299.99692 * 1 2 3 29 29 H 1.08997 * 109.47588 * 239.99813 * 2 1 3 30 30 H 1.09001 * 109.47331 * 119.99901 * 2 1 3 31 31 H 0.97004 * 119.99320 * 179.97438 * 7 6 4 32 32 H 1.08002 * 120.03229 * 0.25074 * 15 14 12 33 33 H 0.97002 * 120.00876 * 355.67573 * 25 24 20 34 34 H 0.97010 * 119.99793 * 175.67097 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3752 1.9619 -1.1454 5 1 2.8651 2.9243 -1.1332 6 6 2.1026 1.2933 -2.4234 7 7 1.1576 0.4143 -2.5045 8 14 3.1205 1.7123 -3.9326 9 1 4.2329 0.7376 -4.0656 10 1 2.2610 1.6506 -5.1421 11 1 3.6766 3.0818 -3.7899 12 6 2.1067 2.0647 1.1582 13 8 2.4122 3.2411 1.1479 14 6 1.8334 1.3869 2.4350 15 6 2.5172 0.2125 2.7688 16 6 2.2576 -0.4171 3.9652 17 17 3.1068 -1.8742 4.3766 18 6 1.3184 0.1086 4.8457 19 9 1.0713 -0.5179 6.0168 20 6 0.6354 1.2679 4.5292 21 7 -0.3620 1.8198 5.4734 22 8 0.0112 2.6834 6.3951 23 8 -1.6225 1.4471 5.3920 24 6 0.8848 1.9158 3.3269 25 7 0.1995 3.0801 3.0068 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.9772 -0.0273 -3.3491 32 1 3.2511 -0.1971 2.0905 33 1 -0.4995 3.4086 3.5937 34 1 0.4197 3.5652 2.1960 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142138004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:20 Heat of formation + Delta-G solvation = -18.505667 kcal Electronic energy + Delta-G solvation = -26733.911317 eV Core-core repulsion = 22419.551825 eV Total energy + Delta-G solvation = -4314.359492 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.057 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -50.74406 -41.99944 -40.49413 -39.30562 -37.98935 -37.09689 -35.92392 -35.80811 -34.24704 -32.99507 -31.40254 -30.61387 -27.99256 -27.02623 -24.93360 -24.12768 -23.76949 -21.62697 -20.06633 -19.67660 -19.61612 -19.40161 -18.95822 -17.91782 -17.43521 -17.28412 -17.04186 -16.83186 -16.54473 -16.15356 -15.90061 -15.20887 -14.91184 -14.68338 -14.63672 -14.20993 -13.90660 -13.79399 -13.66316 -13.23684 -12.92298 -12.88530 -12.72149 -12.59610 -12.28893 -12.15766 -12.11840 -12.10622 -11.87587 -11.59886 -10.98493 -10.77979 -10.43377 -10.02993 -9.27547 -8.60564 -5.72279 -1.75482 -0.98285 -0.48649 -0.44418 0.69064 1.25190 1.46079 1.51868 1.56130 1.86479 2.03854 2.23850 2.42400 2.75242 2.90343 3.06591 3.31569 3.45309 3.66290 3.88234 4.20271 4.29084 4.37071 4.44196 4.72452 4.77084 4.81807 5.05722 5.12593 5.15945 5.38925 5.59390 5.69318 5.90456 6.08560 6.36780 7.07657 7.35726 8.04209 8.35168 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.004388 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.176545 B = 6380.126906 C = 7300.187707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.099 3.901 3 N -0.384 5.384 4 C -0.385 4.385 5 H 0.084 0.916 6 C 0.026 3.974 7 N -0.815 5.815 8 Si 0.988 3.012 9 H -0.262 1.262 10 H -0.271 1.271 11 H -0.276 1.276 12 C 0.425 3.575 13 O -0.640 6.640 14 C -0.147 4.147 15 C 0.018 3.982 16 C -0.108 4.108 17 Cl -0.011 7.011 18 C 0.200 3.800 19 F -0.109 7.109 20 C -0.120 4.120 21 N -0.024 5.024 22 O -0.139 6.139 23 O -0.132 6.132 24 C 0.325 3.675 25 N -0.829 5.829 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.292 0.708 32 H 0.178 0.822 33 H 0.408 0.592 34 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.220 -6.641 6.268 9.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 N -0.094 5.094 4 C -0.514 4.514 5 H 0.102 0.898 6 C -0.189 4.189 7 N -0.446 5.446 8 Si 0.810 3.190 9 H -0.186 1.186 10 H -0.196 1.196 11 H -0.200 1.200 12 C 0.218 3.782 13 O -0.532 6.532 14 C -0.156 4.156 15 C -0.002 4.002 16 C -0.139 4.139 17 Cl 0.018 6.982 18 C 0.177 3.823 19 F -0.087 7.087 20 C -0.210 4.210 21 N 0.473 4.527 22 O -0.343 6.343 23 O -0.339 6.339 24 C 0.208 3.792 25 N -0.365 5.365 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.196 0.804 33 H 0.238 0.762 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 0.792 -6.673 5.620 8.760 hybrid contribution -0.355 0.638 -0.149 0.745 sum 0.437 -6.035 5.471 8.158 Atomic orbital electron populations 1.21906 0.95565 1.01560 1.00428 1.21969 0.95491 0.82410 1.02467 1.42837 1.49442 1.11797 1.05355 1.20553 1.40285 1.07181 0.83334 0.89803 1.27487 0.95521 0.94962 1.00881 1.69114 1.23528 1.22808 1.29193 0.85012 0.78616 0.79179 0.76162 1.18644 1.19590 1.20045 1.17177 0.91298 0.86533 0.83203 1.90570 1.58773 1.17096 1.86792 1.19400 1.01042 0.98448 0.96729 1.21313 0.95380 0.90343 0.93177 1.20033 1.01422 0.96038 0.96387 1.98401 1.74965 1.31535 1.93317 1.16430 0.94532 0.88540 0.82806 1.91609 1.92679 1.80675 1.43776 1.19080 1.05266 1.02911 0.93713 1.50031 1.02886 0.99186 1.00582 1.96300 1.85847 1.25514 1.26663 1.96293 0.97010 1.62375 1.78197 1.16883 0.88807 0.86002 0.87524 1.42685 1.39484 1.24283 1.30040 0.92042 0.91236 0.95728 0.88524 0.91048 0.89574 0.80439 0.76237 0.74062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.68 71.98 0.70 -4.24 16 2 C 0.10 3.69 5.05 86.38 0.44 4.13 16 3 N -0.38 -17.03 2.54 -634.73 -1.62 -18.64 16 4 C -0.39 -18.86 9.66 86.71 0.84 -18.03 16 5 H 0.08 4.57 7.34 -2.91 -0.02 4.55 16 6 C 0.03 1.14 5.08 87.30 0.44 1.59 16 7 N -0.82 -34.34 8.73 23.26 0.20 -34.14 16 8 Si 0.99 35.30 29.69 68.60 2.04 37.34 16 9 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 10 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 11 H -0.28 -10.46 7.11 99.48 0.71 -9.75 16 12 C 0.43 18.61 6.36 86.57 0.55 19.16 16 13 O -0.64 -32.67 15.34 -3.86 -0.06 -32.73 16 14 C -0.15 -5.13 4.66 -19.98 -0.09 -5.23 16 15 C 0.02 0.53 7.38 22.54 0.17 0.69 16 16 C -0.11 -2.84 6.32 22.33 0.14 -2.70 16 17 Cl -0.01 -0.25 28.59 -2.72 -0.08 -0.33 16 18 C 0.20 5.75 7.27 22.47 0.16 5.92 16 19 F -0.11 -3.11 16.63 44.97 0.75 -2.37 16 20 C -0.12 -3.78 6.29 36.52 0.23 -3.55 16 21 N -0.02 -0.77 3.82 -46.13 -0.18 -0.94 16 22 O -0.14 -4.59 19.97 3.50 0.07 -4.52 16 23 O -0.13 -4.30 19.97 3.52 0.07 -4.23 16 24 C 0.32 10.81 6.75 38.73 0.26 11.07 16 25 N -0.83 -26.49 8.93 -50.92 -0.45 -26.94 16 26 H 0.06 2.56 6.53 -2.39 -0.02 2.54 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.02 0.86 7.81 -2.39 -0.02 0.85 16 29 H 0.10 3.83 5.69 -2.39 -0.01 3.81 16 30 H 0.07 2.23 4.49 -2.39 -0.01 2.22 16 31 H 0.29 11.21 8.26 -92.71 -0.77 10.44 16 32 H 0.18 4.50 7.26 -2.91 -0.02 4.47 16 33 H 0.41 11.40 8.07 -92.71 -0.75 10.65 16 34 H 0.42 14.96 6.81 -92.70 -0.63 14.33 16 Total: -1.00 -53.64 320.45 4.43 -49.21 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: -0.15 Total: 29.48 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 3.83 Total: 8.82 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -2.04 Total: -80.67 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: 0.08 Total: -41.48 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.75 Total: -2.37 kcal Atomic # 14 Polarization: 35.30 SS G_CDS: 2.04 Total: 37.34 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.08 Total: -0.33 kcal Total: -53.64 4.43 -49.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142138004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.700 kcal (2) G-P(sol) polarization free energy of solvation -53.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds