Wall clock time and date at job start Tue Mar 31 2020 16:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47353 * 2 1 4 4 C 1.50705 * 109.47279 * 240.00134 * 2 1 3 5 5 H 1.08001 * 119.99859 * 239.99894 * 4 2 1 6 6 C 1.37872 * 119.99855 * 59.99925 * 4 2 1 7 7 N 1.31510 * 120.00145 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99954 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47030 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47257 * 119.99795 * 8 6 4 11 11 H 1.48500 * 109.47359 * 239.99929 * 8 6 4 12 12 N 1.46497 * 109.47401 * 120.00162 * 2 1 3 13 13 C 1.34782 * 119.99909 * 274.99961 * 12 2 1 14 14 O 1.21621 * 119.99671 * 0.02562 * 13 12 2 15 15 C 1.47317 * 120.00039 * 179.97438 * 13 12 2 16 16 C 1.39818 * 120.17557 * 354.06131 * 15 13 12 17 17 C 1.37730 * 119.93654 * 179.97438 * 16 15 13 18 18 Cl 1.73600 * 119.84851 * 180.02562 * 17 16 15 19 19 C 1.38997 * 120.29772 * 0.02562 * 17 16 15 20 20 F 1.35104 * 119.81571 * 179.97438 * 19 17 16 21 21 C 1.38229 * 120.36111 * 359.97438 * 19 17 16 22 22 N 1.48019 * 119.97158 * 179.97438 * 21 19 17 23 23 O 1.21806 * 119.99872 * 90.00289 * 22 21 19 24 24 O 1.21801 * 120.00263 * 269.99951 * 22 21 19 25 25 C 1.38831 * 120.05500 * 359.74809 * 21 19 17 26 26 N 1.38934 * 120.14934 * 180.27233 * 25 21 19 27 27 H 1.09006 * 109.47579 * 60.00230 * 1 2 3 28 28 H 1.09001 * 109.47353 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47275 * 300.00049 * 1 2 3 30 30 H 0.97001 * 119.99713 * 180.02562 * 7 6 4 31 31 H 0.97000 * 120.00508 * 94.99856 * 12 2 1 32 32 H 1.08003 * 120.03555 * 359.95441 * 16 15 13 33 33 H 0.97004 * 119.99866 * 185.71324 * 26 25 21 34 34 H 0.96991 * 120.00104 * 5.71903 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1465 -2.2869 -3.6038 10 1 1.1661 -1.5866 -4.8161 11 1 3.1466 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8573 1.1617 2.4118 15 6 2.6376 -0.7128 3.5601 16 6 2.8527 -2.0942 3.5354 17 6 3.3120 -2.7385 4.6628 18 17 3.5789 -4.4535 4.6295 19 6 3.5627 -2.0217 5.8270 20 9 4.0125 -2.6637 6.9274 21 6 3.3543 -0.6557 5.8651 22 7 3.6235 0.0989 7.1096 23 8 4.7290 0.5700 7.3092 24 8 2.7397 0.2490 7.9342 25 6 2.8971 0.0096 4.7356 26 7 2.6924 1.3834 4.7700 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.7081 1.1608 -3.4844 31 1 2.2490 -1.6318 1.1526 32 1 2.6587 -2.6555 2.6334 33 1 2.2952 1.8337 4.0082 34 1 2.9467 1.8920 5.5557 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001145058972.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:14 Heat of formation + Delta-G solvation = -72.514531 kcal Electronic energy + Delta-G solvation = -25794.728931 eV Core-core repulsion = 21478.027438 eV Total energy + Delta-G solvation = -4316.701492 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.057 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.86257 -43.56920 -41.79839 -39.77841 -38.04322 -37.87093 -37.00917 -35.94662 -34.44497 -33.31528 -31.28499 -30.12216 -27.84182 -27.32808 -25.59475 -24.08037 -23.17141 -21.75736 -20.82676 -20.17854 -19.84918 -19.59133 -19.09071 -18.12663 -17.59059 -17.57258 -17.41366 -17.18157 -16.71164 -16.40954 -16.19316 -15.37673 -14.89134 -14.86168 -14.68704 -14.43791 -13.92029 -13.73193 -13.66238 -13.03375 -13.00326 -12.88880 -12.75168 -12.63906 -12.50629 -12.30640 -12.26422 -12.11046 -11.73424 -11.13446 -11.07971 -10.96121 -10.61048 -9.96138 -9.35130 -8.17415 -6.33893 -1.16004 -0.92923 -0.56428 -0.16267 0.69802 1.12953 1.46419 1.49430 1.59315 1.81959 2.11465 2.16925 2.33785 2.45357 2.97459 3.14293 3.17047 3.33031 3.55557 3.83198 4.17193 4.25276 4.51884 4.77594 4.89751 4.93294 5.08695 5.33830 5.48579 5.61975 5.68442 5.86184 6.07197 6.15924 6.20575 6.69170 6.74812 7.22385 7.40700 8.88672 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.003425 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.897348 B = 8173.704681 C = 9469.491288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.271 3.729 3 H 0.010 0.990 4 C -0.545 4.545 5 H 0.078 0.922 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.966 3.034 9 H -0.258 1.258 10 H -0.282 1.282 11 H -0.288 1.288 12 N -0.684 5.684 13 C 0.564 3.436 14 O -0.582 6.582 15 C -0.204 4.204 16 C 0.056 3.944 17 C -0.129 4.129 18 Cl -0.010 7.010 19 C 0.232 3.768 20 F -0.106 7.106 21 C -0.168 4.168 22 N 0.027 4.973 23 O -0.135 6.135 24 O -0.132 6.132 25 C 0.348 3.652 26 N -0.823 5.823 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.017 0.983 30 H 0.265 0.735 31 H 0.408 0.592 32 H 0.192 0.808 33 H 0.431 0.569 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.535 -8.654 14.148 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.168 3.832 3 H 0.028 0.972 4 C -0.583 4.583 5 H 0.096 0.904 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.792 3.208 9 H -0.181 1.181 10 H -0.208 1.208 11 H -0.214 1.214 12 N -0.332 5.332 13 C 0.351 3.649 14 O -0.465 6.465 15 C -0.213 4.213 16 C 0.036 3.964 17 C -0.160 4.160 18 Cl 0.019 6.981 19 C 0.209 3.791 20 F -0.084 7.084 21 C -0.256 4.256 22 N 0.558 4.442 23 O -0.358 6.358 24 O -0.356 6.356 25 C 0.228 3.772 26 N -0.367 5.367 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.246 0.754 32 H 0.209 0.791 33 H 0.278 0.722 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.097 -8.213 13.295 16.156 hybrid contribution 0.379 -0.012 -0.175 0.417 sum 4.476 -8.225 13.120 16.119 Atomic orbital electron populations 1.21928 0.97887 0.99851 0.99920 1.18480 0.91315 0.92332 0.81076 0.97180 1.21562 1.32569 1.13701 0.90509 0.90379 1.25693 0.94860 0.95501 1.02125 1.70035 1.36898 1.23877 1.24530 0.85376 0.78029 0.78646 0.78776 1.18138 1.20783 1.21386 1.46119 1.63629 1.14392 1.09048 1.17831 0.77778 0.86062 0.83196 1.90380 1.54514 1.17255 1.84347 1.19178 1.15035 0.94128 0.92979 1.21457 0.85842 0.91410 0.97641 1.20080 1.13732 0.88760 0.93381 1.98429 1.95177 1.06006 1.98468 1.16642 0.92899 0.85979 0.83576 1.91642 1.85180 1.81064 1.50548 1.19866 1.27520 0.91201 0.87032 1.43124 1.00260 0.99291 1.01500 1.94593 1.09868 1.48669 1.82642 1.94590 1.39537 1.61909 1.39575 1.16924 0.85845 0.85661 0.88802 1.43769 1.64720 1.03845 1.24398 0.91484 0.93803 0.96389 0.92615 0.75444 0.79107 0.72206 0.76684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.15 9.26 71.98 0.67 -5.49 16 2 C 0.27 12.26 2.56 44.24 0.11 12.37 16 3 H 0.01 0.55 7.58 -2.39 -0.02 0.54 16 4 C -0.55 -25.77 8.73 25.60 0.22 -25.55 16 5 H 0.08 3.39 7.74 -2.91 -0.02 3.36 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -48.84 11.32 21.44 0.24 -48.59 16 8 Si 0.97 39.00 29.54 68.60 2.03 41.03 16 9 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 10 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.29 -11.79 7.11 99.48 0.71 -11.09 16 12 N -0.68 -23.30 5.02 -449.48 -2.26 -25.55 16 13 C 0.56 18.48 7.71 86.63 0.67 19.15 16 14 O -0.58 -22.72 13.30 -4.10 -0.05 -22.78 16 15 C -0.20 -5.05 5.89 -19.98 -0.12 -5.17 16 16 C 0.06 1.05 9.29 22.53 0.21 1.26 16 17 C -0.13 -2.42 6.32 22.33 0.14 -2.28 16 18 Cl -0.01 -0.16 28.59 -2.72 -0.08 -0.24 16 19 C 0.23 5.10 7.27 22.45 0.16 5.26 16 20 F -0.11 -2.42 16.63 44.97 0.75 -1.67 16 21 C -0.17 -4.10 6.17 36.52 0.23 -3.87 16 22 N 0.03 0.71 3.30 -46.13 -0.15 0.55 16 23 O -0.13 -3.64 19.26 18.88 0.36 -3.28 16 24 O -0.13 -3.59 19.26 18.88 0.36 -3.22 16 25 C 0.35 8.78 6.76 38.68 0.26 9.04 16 26 N -0.82 -20.69 8.92 -50.95 -0.45 -21.14 16 27 H 0.07 3.39 6.07 -2.38 -0.01 3.38 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 31 H 0.41 10.88 6.60 -92.71 -0.61 10.27 16 32 H 0.19 2.52 6.44 -2.91 -0.02 2.50 16 33 H 0.43 12.30 5.34 -94.86 -0.51 11.79 16 34 H 0.40 8.88 8.08 -92.72 -0.75 8.13 16 Total: -1.00 -57.44 324.14 3.12 -54.32 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.63 Total: 24.48 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 3.00 Total: 6.10 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -2.62 Total: -94.73 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: 0.67 Total: -29.28 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.75 Total: -1.67 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal Total: -57.44 3.12 -54.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001145058972.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.197 kcal (2) G-P(sol) polarization free energy of solvation -57.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds