Wall clock time and date at job start Tue Mar 31 2020 16:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47451 * 2 1 4 4 C 1.50700 * 109.46773 * 119.99943 * 2 1 3 5 5 H 1.08004 * 120.00135 * 120.00270 * 4 2 1 6 6 C 1.37882 * 120.00170 * 299.99524 * 4 2 1 7 7 N 1.31513 * 120.00051 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99788 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.47210 * 90.00064 * 8 6 4 10 10 H 1.48499 * 109.46940 * 209.99625 * 8 6 4 11 11 H 1.48501 * 109.47098 * 329.99801 * 8 6 4 12 12 N 1.46502 * 109.46979 * 239.99580 * 2 1 3 13 13 C 1.34776 * 119.99559 * 85.00157 * 12 2 1 14 14 O 1.21615 * 120.00269 * 0.02562 * 13 12 2 15 15 C 1.47318 * 119.99648 * 179.97438 * 13 12 2 16 16 C 1.39822 * 120.17869 * 354.06194 * 15 13 12 17 17 C 1.37718 * 119.94036 * 179.97438 * 16 15 13 18 18 Cl 1.73592 * 119.85112 * 180.02562 * 17 16 15 19 19 C 1.38996 * 120.29902 * 359.97438 * 17 16 15 20 20 F 1.35101 * 119.82235 * 179.97438 * 19 17 16 21 21 C 1.38237 * 120.35989 * 0.02562 * 19 17 16 22 22 N 1.48022 * 119.97125 * 180.02562 * 21 19 17 23 23 O 1.21799 * 120.00031 * 90.00041 * 22 21 19 24 24 O 1.21804 * 119.99745 * 269.99149 * 22 21 19 25 25 C 1.38837 * 120.05438 * 359.73656 * 21 19 17 26 26 N 1.38924 * 120.15011 * 180.27536 * 25 21 19 27 27 H 1.08992 * 109.46961 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46861 * 299.99980 * 1 2 3 29 29 H 1.08998 * 109.46714 * 60.00074 * 1 2 3 30 30 H 0.96999 * 119.99678 * 179.97438 * 7 6 4 31 31 H 0.96997 * 119.99742 * 265.00358 * 12 2 1 32 32 H 1.08000 * 120.02895 * 359.95244 * 16 15 13 33 33 H 0.96995 * 120.00414 * 185.72296 * 26 25 21 34 34 H 0.97002 * 120.00186 * 5.72529 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8596 3.5566 8 14 0.6249 1.2792 2.6541 9 1 -0.8028 0.8729 2.6998 10 1 0.9760 1.9952 3.9068 11 1 0.8473 2.1766 1.4920 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8583 1.1618 -2.4116 15 6 2.6386 -0.7128 -3.5598 16 6 3.0896 -2.0335 -3.4739 17 6 3.5476 -2.6781 -4.6014 18 17 4.1064 -4.3180 -4.4922 19 6 3.5635 -2.0219 -5.8266 20 9 4.0153 -2.6633 -6.9265 21 6 3.1205 -0.7162 -5.9257 22 7 3.1407 -0.0258 -7.2349 23 8 2.1725 -0.0881 -7.9713 24 8 4.1256 0.6047 -7.5758 25 6 2.6511 -0.0538 -4.7995 26 7 2.2001 1.2565 -4.8979 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9032 -0.5279 4.4376 31 1 2.2490 -1.6319 -1.1525 32 1 3.0791 -2.5475 -2.5241 33 1 1.9508 1.7450 -4.0979 34 1 2.1344 1.6829 -5.7667 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001145058988.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:18 Heat of formation + Delta-G solvation = -47.898852 kcal Electronic energy + Delta-G solvation = -25866.030505 eV Core-core repulsion = 21550.396428 eV Total energy + Delta-G solvation = -4315.634076 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.057 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.92068 -42.55296 -40.74320 -38.67875 -37.17663 -36.83288 -35.78222 -34.81015 -32.91492 -32.17927 -30.41638 -29.26651 -26.86104 -25.41906 -24.52488 -23.12452 -21.84633 -20.39775 -19.74117 -19.14926 -18.86962 -18.65630 -17.76940 -17.07769 -16.63564 -16.45359 -16.39602 -15.93374 -15.61601 -15.20192 -14.92576 -14.15588 -13.96148 -13.68839 -13.51757 -13.13396 -12.94691 -12.82722 -12.38727 -12.06022 -11.97731 -11.69213 -11.54498 -11.44942 -11.41248 -10.99527 -10.86126 -10.37256 -10.05282 -10.01211 -9.65179 -9.45654 -8.98123 -8.64880 -8.36205 -6.36478 -4.41335 -0.21860 0.12040 0.34188 0.81831 1.56710 2.12518 2.75968 3.10846 3.22650 3.23628 3.24774 3.27404 3.29138 3.86853 4.15804 4.17966 4.26690 4.49891 4.82287 4.97817 5.08918 5.16142 5.43793 5.90717 6.08708 6.12611 6.31865 6.47890 6.59269 6.80951 6.94859 7.19658 7.21709 7.28345 7.77613 8.21693 8.35922 8.61203 9.22091 10.75278 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.003562 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.875082 B = 7857.958801 C = 9244.810147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.236 3.764 3 H 0.054 0.946 4 C -0.542 4.542 5 H 0.082 0.918 6 C 0.082 3.918 7 N -0.887 5.887 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.292 1.292 11 H -0.262 1.262 12 N -0.681 5.681 13 C 0.566 3.434 14 O -0.554 6.554 15 C -0.199 4.199 16 C 0.037 3.963 17 C -0.136 4.136 18 Cl -0.024 7.024 19 C 0.230 3.770 20 F -0.105 7.105 21 C -0.162 4.162 22 N 0.025 4.975 23 O -0.129 6.129 24 O -0.125 6.125 25 C 0.352 3.648 26 N -0.823 5.823 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.036 0.964 30 H 0.269 0.731 31 H 0.398 0.602 32 H 0.168 0.832 33 H 0.435 0.565 34 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 -2.908 -16.786 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.133 3.867 3 H 0.072 0.928 4 C -0.580 4.580 5 H 0.100 0.900 6 C -0.123 4.123 7 N -0.523 5.523 8 Si 0.714 3.286 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.187 1.187 12 N -0.327 5.327 13 C 0.352 3.648 14 O -0.436 6.436 15 C -0.209 4.209 16 C 0.016 3.984 17 C -0.167 4.167 18 Cl 0.005 6.995 19 C 0.207 3.793 20 F -0.083 7.083 21 C -0.250 4.250 22 N 0.557 4.443 23 O -0.352 6.352 24 O -0.349 6.349 25 C 0.231 3.769 26 N -0.369 5.369 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.233 0.767 32 H 0.185 0.815 33 H 0.283 0.717 34 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.149 -2.536 -15.786 16.030 hybrid contribution -0.401 0.404 -0.408 0.701 sum 0.748 -2.132 -16.195 16.352 Atomic orbital electron populations 1.22473 0.98800 1.01231 0.99623 1.19267 0.90453 0.94804 0.82142 0.92818 1.20960 1.33932 1.14773 0.88342 0.89979 1.24812 0.95358 0.96669 0.95464 1.69851 1.44377 1.39885 0.98162 0.86886 0.80577 0.83453 0.77634 1.20183 1.21974 1.18712 1.46126 1.63275 1.13934 1.09353 1.17483 0.78429 0.86246 0.82664 1.90374 1.53792 1.15693 1.83728 1.19495 1.13073 0.95227 0.93063 1.21297 0.87364 0.91665 0.98030 1.20124 1.13332 0.90810 0.92437 1.98419 1.87878 1.14960 1.98214 1.16543 0.92836 0.86730 0.83157 1.91644 1.85268 1.80752 1.50606 1.19909 1.25227 0.94906 0.84947 1.43037 1.00280 0.99463 1.01488 1.94594 1.26207 1.65072 1.49341 1.94600 1.23877 1.38392 1.78038 1.16862 0.85316 0.85410 0.89274 1.43789 1.67309 1.10449 1.15325 0.92522 0.93069 0.94444 0.92054 0.76667 0.81488 0.71674 0.77356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 8.96 37.16 0.33 -2.90 16 2 C 0.24 4.96 2.15 -69.08 -0.15 4.81 16 3 H 0.05 1.24 6.63 -51.93 -0.34 0.90 16 4 C -0.54 -13.32 9.31 -34.44 -0.32 -13.64 16 5 H 0.08 2.11 7.98 -52.48 -0.42 1.69 16 6 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 7 N -0.89 -24.72 13.96 55.43 0.77 -23.95 16 8 Si 0.89 20.18 24.37 -169.99 -4.14 16.03 16 9 H -0.28 -6.09 6.87 56.52 0.39 -5.70 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.26 -5.86 6.53 56.52 0.37 -5.50 16 12 N -0.68 -11.32 5.02 -56.04 -0.28 -11.60 16 13 C 0.57 8.86 7.70 -12.57 -0.10 8.76 16 14 O -0.55 -9.89 13.30 5.26 0.07 -9.82 16 15 C -0.20 -2.49 5.89 -104.80 -0.62 -3.10 16 16 C 0.04 0.38 9.29 -39.18 -0.36 0.01 16 17 C -0.14 -1.43 6.32 -39.49 -0.25 -1.68 16 18 Cl -0.02 -0.23 28.59 -51.86 -1.48 -1.71 16 19 C 0.23 2.68 7.27 -39.30 -0.29 2.40 16 20 F -0.10 -1.27 16.63 2.25 0.04 -1.23 16 21 C -0.16 -2.00 6.17 -79.72 -0.49 -2.49 16 22 N 0.03 0.33 3.30 34.07 0.11 0.44 16 23 O -0.13 -1.73 19.26 -29.46 -0.57 -2.30 16 24 O -0.12 -1.69 19.26 -29.46 -0.57 -2.26 16 25 C 0.35 4.37 6.76 -83.61 -0.57 3.81 16 26 N -0.82 -9.75 8.92 32.54 0.29 -9.46 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.40 5.58 6.60 -40.82 -0.27 5.31 16 32 H 0.17 1.39 6.44 -52.49 -0.34 1.05 16 33 H 0.44 5.68 5.34 -40.96 -0.22 5.46 16 34 H 0.40 4.11 8.08 -40.82 -0.33 3.78 16 LS Contribution 317.32 15.07 4.78 4.78 Total: -1.00 -27.89 317.32 -5.99 -33.88 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -2.12 Total: 9.19 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -2.90 Total: -2.00 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.90 Total: -44.57 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -1.06 Total: -14.38 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.14 Total: 16.03 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.48 Total: -1.71 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.89 -5.99 -33.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001145058988.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.019 kcal (2) G-P(sol) polarization free energy of solvation -27.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds