Wall clock time and date at job start Tue Mar 31 2020 16:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47451 * 2 1 4 4 C 1.50700 * 109.46773 * 119.99943 * 2 1 3 5 5 H 1.08004 * 120.00135 * 120.00270 * 4 2 1 6 6 C 1.37882 * 120.00170 * 299.99524 * 4 2 1 7 7 N 1.31513 * 120.00051 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99788 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.47210 * 90.00064 * 8 6 4 10 10 H 1.48499 * 109.46940 * 209.99625 * 8 6 4 11 11 H 1.48501 * 109.47098 * 329.99801 * 8 6 4 12 12 N 1.46502 * 109.46979 * 239.99580 * 2 1 3 13 13 C 1.34776 * 119.99559 * 85.00157 * 12 2 1 14 14 O 1.21615 * 120.00269 * 0.02562 * 13 12 2 15 15 C 1.47318 * 119.99648 * 179.97438 * 13 12 2 16 16 C 1.39822 * 120.17869 * 354.06194 * 15 13 12 17 17 C 1.37718 * 119.94036 * 179.97438 * 16 15 13 18 18 Cl 1.73592 * 119.85112 * 180.02562 * 17 16 15 19 19 C 1.38996 * 120.29902 * 359.97438 * 17 16 15 20 20 F 1.35101 * 119.82235 * 179.97438 * 19 17 16 21 21 C 1.38237 * 120.35989 * 0.02562 * 19 17 16 22 22 N 1.48022 * 119.97125 * 180.02562 * 21 19 17 23 23 O 1.21799 * 120.00031 * 90.00041 * 22 21 19 24 24 O 1.21804 * 119.99745 * 269.99149 * 22 21 19 25 25 C 1.38837 * 120.05438 * 359.73656 * 21 19 17 26 26 N 1.38924 * 120.15011 * 180.27536 * 25 21 19 27 27 H 1.08992 * 109.46961 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46861 * 299.99980 * 1 2 3 29 29 H 1.08998 * 109.46714 * 60.00074 * 1 2 3 30 30 H 0.96999 * 119.99678 * 179.97438 * 7 6 4 31 31 H 0.96997 * 119.99742 * 265.00358 * 12 2 1 32 32 H 1.08000 * 120.02895 * 359.95244 * 16 15 13 33 33 H 0.96995 * 120.00414 * 185.72296 * 26 25 21 34 34 H 0.97002 * 120.00186 * 5.72529 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8596 3.5566 8 14 0.6249 1.2792 2.6541 9 1 -0.8028 0.8729 2.6998 10 1 0.9760 1.9952 3.9068 11 1 0.8473 2.1766 1.4920 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8583 1.1618 -2.4116 15 6 2.6386 -0.7128 -3.5598 16 6 3.0896 -2.0335 -3.4739 17 6 3.5476 -2.6781 -4.6014 18 17 4.1064 -4.3180 -4.4922 19 6 3.5635 -2.0219 -5.8266 20 9 4.0153 -2.6633 -6.9265 21 6 3.1205 -0.7162 -5.9257 22 7 3.1407 -0.0258 -7.2349 23 8 2.1725 -0.0881 -7.9713 24 8 4.1256 0.6047 -7.5758 25 6 2.6511 -0.0538 -4.7995 26 7 2.2001 1.2565 -4.8979 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9032 -0.5279 4.4376 31 1 2.2490 -1.6319 -1.1525 32 1 3.0791 -2.5475 -2.5241 33 1 1.9508 1.7450 -4.0979 34 1 2.1344 1.6829 -5.7667 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001145058988.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:17 Heat of formation + Delta-G solvation = -65.914054 kcal Electronic energy + Delta-G solvation = -25866.811702 eV Core-core repulsion = 21550.396428 eV Total energy + Delta-G solvation = -4316.415274 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.057 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.87297 -43.57126 -41.84900 -39.85353 -38.06228 -37.87127 -37.11349 -35.96785 -34.48555 -33.47109 -31.78117 -30.39460 -27.84928 -27.21940 -25.67329 -24.09474 -23.21189 -21.79533 -20.87736 -20.17532 -19.85694 -19.61245 -19.19035 -18.17946 -17.95269 -17.58499 -17.42779 -17.17663 -16.80528 -16.51350 -16.22782 -15.43305 -15.08640 -14.89917 -14.77088 -14.64026 -14.12226 -13.93569 -13.73483 -13.65445 -13.23797 -13.02685 -12.76627 -12.64397 -12.50564 -12.31132 -12.13361 -11.74361 -11.64152 -11.27946 -11.13848 -10.98146 -10.86505 -10.09485 -9.37116 -8.36030 -6.42564 -1.17861 -0.93301 -0.57698 -0.16801 0.69635 1.09180 1.30798 1.39408 1.46528 1.80379 2.05728 2.10749 2.27781 2.32548 2.95399 3.01045 3.11277 3.31569 3.53858 3.79438 4.14474 4.22648 4.43884 4.52742 4.57048 4.69638 4.89321 4.99377 5.25103 5.37094 5.49396 5.62019 6.08119 6.15618 6.19228 6.56618 6.65902 7.09013 7.27432 8.78684 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.003562 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.875082 B = 7857.958801 C = 9244.810147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.242 3.758 3 H 0.035 0.965 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.032 3.968 7 N -0.932 5.932 8 Si 0.935 3.065 9 H -0.262 1.262 10 H -0.298 1.298 11 H -0.256 1.256 12 N -0.681 5.681 13 C 0.570 3.430 14 O -0.576 6.576 15 C -0.205 4.205 16 C 0.056 3.944 17 C -0.130 4.130 18 Cl -0.012 7.012 19 C 0.233 3.767 20 F -0.107 7.107 21 C -0.168 4.168 22 N 0.027 4.973 23 O -0.131 6.131 24 O -0.135 6.135 25 C 0.351 3.649 26 N -0.821 5.821 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.269 0.731 31 H 0.411 0.589 32 H 0.189 0.811 33 H 0.432 0.568 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 -3.272 -17.918 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.138 3.862 3 H 0.052 0.948 4 C -0.572 4.572 5 H 0.081 0.919 6 C -0.169 4.169 7 N -0.571 5.571 8 Si 0.763 3.237 9 H -0.188 1.188 10 H -0.226 1.226 11 H -0.181 1.181 12 N -0.329 5.329 13 C 0.358 3.642 14 O -0.459 6.459 15 C -0.214 4.214 16 C 0.036 3.964 17 C -0.161 4.161 18 Cl 0.017 6.983 19 C 0.210 3.790 20 F -0.084 7.084 21 C -0.256 4.256 22 N 0.558 4.442 23 O -0.355 6.355 24 O -0.358 6.358 25 C 0.230 3.770 26 N -0.366 5.366 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.248 0.752 32 H 0.206 0.794 33 H 0.279 0.721 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.692 -2.912 -16.971 17.233 hybrid contribution -0.183 0.437 -0.148 0.496 sum 0.509 -2.475 -17.119 17.305 Atomic orbital electron populations 1.22381 0.97486 1.02044 0.99785 1.18895 0.91372 0.93582 0.82375 0.94759 1.21231 1.32494 1.13810 0.89658 0.91913 1.25512 0.96760 0.99163 0.95437 1.69966 1.46576 1.41836 0.98704 0.86065 0.79750 0.80573 0.77309 1.18817 1.22600 1.18057 1.45840 1.63916 1.14514 1.08600 1.17735 0.77616 0.85945 0.82939 1.90378 1.54511 1.16790 1.84227 1.19102 1.14683 0.95935 0.91683 1.21460 0.85457 0.90650 0.98816 1.20090 1.12846 0.91257 0.91896 1.98433 1.87694 1.13984 1.98149 1.16655 0.92395 0.86489 0.83445 1.91643 1.85238 1.80725 1.50842 1.19868 1.26121 0.95170 0.84441 1.43121 1.00069 0.99288 1.01694 1.94589 1.26212 1.65023 1.49688 1.94600 1.24021 1.38814 1.78368 1.16873 0.85283 0.85533 0.89267 1.43744 1.66987 1.10344 1.15505 0.91436 0.94068 0.93015 0.92125 0.75166 0.79354 0.72111 0.76613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.96 8.96 71.98 0.65 -5.31 16 2 C 0.24 9.85 2.15 44.25 0.10 9.94 16 3 H 0.03 1.55 6.63 -2.39 -0.02 1.54 16 4 C -0.53 -26.00 9.31 25.60 0.24 -25.76 16 5 H 0.06 3.23 7.98 -2.91 -0.02 3.21 16 6 C 0.03 1.64 5.45 84.66 0.46 2.10 16 7 N -0.93 -52.58 13.96 21.45 0.30 -52.28 16 8 Si 0.94 41.15 24.37 68.60 1.67 42.82 16 9 H -0.26 -10.91 6.87 99.48 0.68 -10.23 16 10 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.26 -10.91 6.53 99.48 0.65 -10.26 16 12 N -0.68 -21.45 5.02 -449.47 -2.26 -23.71 16 13 C 0.57 16.84 7.70 86.63 0.67 17.50 16 14 O -0.58 -19.79 13.30 -4.08 -0.05 -19.84 16 15 C -0.20 -4.68 5.89 -19.98 -0.12 -4.80 16 16 C 0.06 1.00 9.29 22.53 0.21 1.21 16 17 C -0.13 -2.40 6.32 22.33 0.14 -2.26 16 18 Cl -0.01 -0.20 28.59 -2.72 -0.08 -0.28 16 19 C 0.23 4.95 7.27 22.45 0.16 5.11 16 20 F -0.11 -2.37 16.63 44.97 0.75 -1.63 16 21 C -0.17 -3.87 6.17 36.52 0.23 -3.65 16 22 N 0.03 0.67 3.30 -46.12 -0.15 0.52 16 23 O -0.13 -3.35 19.26 18.89 0.36 -2.99 16 24 O -0.14 -3.54 19.26 18.88 0.36 -3.17 16 25 C 0.35 8.14 6.76 38.69 0.26 8.40 16 26 N -0.82 -18.43 8.92 -50.95 -0.45 -18.88 16 27 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.04 1.62 3.27 -2.39 -0.01 1.61 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.27 14.39 8.31 -92.71 -0.77 13.61 16 31 H 0.41 10.65 6.60 -92.71 -0.61 10.04 16 32 H 0.19 2.53 6.44 -2.91 -0.02 2.51 16 33 H 0.43 10.80 5.34 -94.85 -0.51 10.30 16 34 H 0.40 7.91 8.08 -92.71 -0.75 7.16 16 Total: -1.00 -58.67 317.32 2.74 -55.93 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -0.70 Total: 21.01 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 2.99 Total: 2.49 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -2.56 Total: -94.35 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: 0.67 Total: -26.00 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.75 Total: -1.63 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.67 Total: 42.82 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.08 Total: -0.28 kcal Total: -58.67 2.74 -55.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001145058988.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.981 kcal (2) G-P(sol) polarization free energy of solvation -58.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds