Wall clock time and date at job start Tue Mar 31 2020 16:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86797 * 120.00257 * 2 1 4 4 H 1.48496 * 109.47309 * 270.93248 * 3 2 1 5 5 H 1.48503 * 109.46721 * 30.93629 * 3 2 1 6 6 H 1.48506 * 109.46871 * 150.93230 * 3 2 1 7 7 C 1.40038 * 119.99578 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00386 * 340.28247 * 7 2 1 9 9 C 1.41543 * 119.99791 * 160.28089 * 7 2 1 10 10 C 1.41167 * 120.99650 * 333.13082 * 9 7 2 11 11 C 1.37599 * 119.01352 * 179.97438 * 10 9 7 12 12 N 1.32070 * 121.11377 * 359.97438 * 11 10 9 13 13 C 1.32484 * 122.22949 * 359.97438 * 12 11 10 14 14 N 1.39542 * 119.57713 * 180.02562 * 13 12 11 15 15 C 1.39563 * 120.08511 * 132.06191 * 14 13 12 16 16 N 1.32385 * 129.79255 * 359.97438 * 15 14 13 17 17 C 1.29443 * 117.87977 * 180.02562 * 16 15 14 18 18 O 1.35231 * 124.57301 * 179.97438 * 17 16 15 19 19 S 1.70777 * 110.86053 * 0.23214 * 17 16 15 20 20 C 1.38623 * 117.64496 * 180.02562 * 15 14 13 21 21 C 1.40712 * 119.90219 * 359.97438 * 20 15 14 22 22 O 1.35267 * 119.85797 * 179.97438 * 21 20 15 23 23 N 1.32158 * 120.29069 * 359.97438 * 21 20 15 24 24 C 1.33890 * 121.07320 * 0.02562 * 23 21 20 25 25 N 1.31507 * 119.36870 * 180.02562 * 24 23 21 26 26 C 1.38593 * 120.83785 * 0.27438 * 13 12 11 27 27 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.49717 * 359.97395 * 10 9 7 29 29 H 1.08000 * 119.44599 * 180.02562 * 11 10 9 30 30 H 0.96696 * 114.00201 * 90.00225 * 18 17 16 31 31 H 0.96700 * 113.99909 * 270.02694 * 22 21 20 32 32 H 0.97001 * 119.99888 * 359.97438 * 25 24 23 33 33 H 1.08004 * 120.59922 * 179.72482 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4692 2.0578 -1.3998 5 1 1.4489 2.6468 0.7198 6 1 3.5487 1.4344 0.6803 7 6 2.0075 -1.2128 -0.0005 8 1 1.5149 -2.1209 0.3146 9 6 3.3606 -1.2486 -0.4142 10 6 3.8685 -0.2953 -1.3231 11 6 5.1907 -0.3680 -1.6971 12 7 5.9840 -1.3101 -1.2202 13 6 5.5571 -2.2270 -0.3646 14 7 6.4436 -3.1972 0.1046 15 6 6.5195 -3.4735 1.4704 16 7 5.8512 -2.9404 2.4812 17 6 6.1081 -3.3749 3.6731 18 8 5.5079 -2.9271 4.7992 19 16 7.3125 -4.5850 3.6327 20 6 7.4178 -4.4463 1.8809 21 6 8.2111 -5.1146 0.9301 22 8 9.0877 -6.0632 1.3316 23 7 8.1035 -4.8194 -0.3536 24 6 7.2443 -3.8844 -0.7781 25 7 7.1642 -3.6179 -2.0634 26 6 4.2399 -2.2380 0.0664 27 1 -0.4850 0.8401 -0.0004 28 1 3.2288 0.4796 -1.7191 29 1 5.5866 0.3580 -2.3918 30 1 4.7063 -3.4127 5.0374 31 1 9.9689 -5.7225 1.5380 32 1 7.7248 -4.0967 -2.6938 33 1 3.8949 -2.9900 0.7606 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155447928.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:47 Heat of formation + Delta-G solvation = 92.254502 kcal Electronic energy + Delta-G solvation = -25257.934489 eV Core-core repulsion = 21413.483601 eV Total energy + Delta-G solvation = -3844.450889 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.62628 -39.46265 -38.90982 -37.82566 -37.12078 -34.55955 -33.70550 -32.73005 -31.39649 -29.67097 -28.61616 -26.18970 -25.64450 -24.11943 -22.45076 -22.16523 -21.22367 -19.98577 -19.16466 -18.59804 -18.49479 -17.28720 -17.00767 -16.47701 -15.94824 -15.73936 -15.45954 -15.28294 -14.91210 -14.39474 -14.19077 -13.31384 -13.23044 -12.90511 -12.70039 -12.61201 -12.47586 -11.95537 -11.58309 -11.30114 -11.20262 -10.92630 -10.67493 -10.36713 -10.13156 -9.93880 -9.83597 -9.47611 -9.37773 -9.29643 -8.36736 -8.27479 -8.07074 -7.29228 -7.14414 -4.77425 -0.35344 0.58894 1.11705 1.14667 2.02569 2.15027 2.31713 2.55392 3.03065 3.13006 3.16730 3.24045 3.28936 3.68519 3.85660 4.14671 4.32969 4.48647 4.87567 5.23498 5.26979 5.45682 5.76713 6.10321 6.31702 6.41545 6.47991 6.54942 6.69702 6.91315 7.01373 7.03219 7.07095 7.30336 7.55423 7.71076 7.93698 8.14014 8.35662 8.57163 8.63888 9.25491 9.86442 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.004623 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.744829 B = 6055.056611 C = 7447.677048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.089 3.911 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.247 1.247 7 C -0.432 4.432 8 H 0.094 0.906 9 C 0.118 3.882 10 C -0.291 4.291 11 C 0.138 3.862 12 N -0.544 5.544 13 C 0.341 3.659 14 N -0.426 5.426 15 C 0.437 3.563 16 N -0.495 5.495 17 C 0.300 3.700 18 O -0.428 6.428 19 S 0.217 5.783 20 C -0.385 4.385 21 C 0.491 3.509 22 O -0.475 6.475 23 N -0.546 5.546 24 C 0.555 3.445 25 N -0.686 5.686 26 C -0.225 4.225 27 H 0.289 0.711 28 H 0.115 0.885 29 H 0.133 0.867 30 H 0.418 0.582 31 H 0.413 0.587 32 H 0.350 0.650 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.202 -7.636 10.703 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.133 4.133 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.170 1.170 7 C -0.461 4.461 8 H 0.112 0.888 9 C 0.109 3.891 10 C -0.314 4.314 11 C -0.017 4.017 12 N -0.259 5.259 13 C 0.119 3.881 14 N -0.129 5.129 15 C 0.196 3.804 16 N -0.224 5.224 17 C -0.019 4.019 18 O -0.237 6.237 19 S 0.463 5.537 20 C -0.515 4.515 21 C 0.273 3.727 22 O -0.283 6.283 23 N -0.278 5.278 24 C 0.186 3.814 25 N -0.320 5.320 26 C -0.251 4.251 27 H 0.100 0.900 28 H 0.133 0.867 29 H 0.150 0.850 30 H 0.279 0.721 31 H 0.274 0.726 32 H 0.169 0.831 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.646 -7.288 9.668 17.508 hybrid contribution -0.698 0.701 0.141 1.000 sum 11.948 -6.587 9.809 16.804 Atomic orbital electron populations 1.69648 1.08233 1.30817 1.32809 1.26191 0.94721 1.01986 0.90439 0.86290 0.80878 0.79250 0.79383 1.19002 1.21582 1.17010 1.19447 0.93041 0.96482 1.37164 0.88813 1.17687 0.92796 0.89670 0.88901 1.22034 0.97522 1.05827 1.05979 1.21705 0.90054 0.93762 0.96177 1.66702 1.38903 1.05102 1.15227 1.17525 0.85705 0.89057 0.95781 1.41625 1.36476 1.34313 1.00469 1.17303 0.88972 0.89400 0.84737 1.65349 1.29605 1.29555 0.97890 1.24092 0.97003 0.93442 0.87398 1.84784 1.44858 1.60104 1.33944 1.83828 1.38210 1.33897 0.97767 1.24024 1.14990 1.13589 0.98929 1.18568 0.86117 0.81685 0.86317 1.84589 1.25196 1.31825 1.86695 1.69621 1.24673 1.18490 1.14997 1.19160 0.86026 0.86221 0.90013 1.70211 1.31501 1.32802 0.97503 1.21384 0.90987 1.05679 1.07057 0.89986 0.86740 0.84959 0.72069 0.72611 0.83146 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.14 13.92 55.55 0.77 -19.37 16 2 C 0.09 2.24 5.42 -17.34 -0.09 2.14 16 3 Si 0.92 20.22 24.57 -169.99 -4.18 16.05 16 4 H -0.26 -5.59 6.44 56.52 0.36 -5.23 16 5 H -0.29 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.25 -5.72 7.04 56.52 0.40 -5.32 16 7 C -0.43 -11.39 9.63 -37.65 -0.36 -11.75 16 8 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 9 C 0.12 3.03 5.18 -106.55 -0.55 2.47 16 10 C -0.29 -7.06 7.43 -38.70 -0.29 -7.35 16 11 C 0.14 3.20 11.15 -17.68 -0.20 3.00 16 12 N -0.54 -13.31 9.21 -12.50 -0.12 -13.43 16 13 C 0.34 8.18 6.20 -154.62 -0.96 7.22 16 14 N -0.43 -9.00 2.94 -63.52 -0.19 -9.18 16 15 C 0.44 7.81 7.13 -154.67 -1.10 6.71 16 16 N -0.49 -8.42 9.43 -14.18 -0.13 -8.55 16 17 C 0.30 3.62 8.57 51.76 0.44 4.06 16 18 O -0.43 -3.96 13.62 -17.39 -0.24 -4.20 16 19 S 0.22 2.02 23.19 -107.50 -2.49 -0.48 16 20 C -0.38 -5.34 6.51 -38.51 -0.25 -5.59 16 21 C 0.49 6.75 7.80 -16.48 -0.13 6.62 16 22 O -0.48 -4.58 13.55 -17.49 -0.24 -4.82 16 23 N -0.55 -9.30 10.45 -13.94 -0.15 -9.45 16 24 C 0.56 11.25 8.32 -323.45 -2.69 8.56 16 25 N -0.69 -14.53 12.52 29.67 0.37 -14.16 16 26 C -0.23 -5.54 8.81 -38.48 -0.34 -5.88 16 27 H 0.29 6.62 8.29 -40.82 -0.34 6.28 16 28 H 0.12 2.68 4.42 -52.49 -0.23 2.45 16 29 H 0.13 2.62 8.06 -52.49 -0.42 2.20 16 30 H 0.42 1.60 9.06 45.56 0.41 2.01 16 31 H 0.41 1.70 9.06 45.56 0.41 2.11 16 32 H 0.35 6.54 8.89 -40.82 -0.36 6.17 16 33 H 0.11 2.59 7.57 -52.48 -0.40 2.19 16 LS Contribution 309.57 15.07 4.67 4.67 Total: -1.00 -34.74 309.57 -8.62 -43.36 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -0.19 Total: 9.34 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: -6.52 Total: 10.22 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: 0.56 Total: -74.14 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.47 Total: -9.02 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.18 Total: 16.05 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.49 Total: -0.48 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.74 -8.62 -43.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155447928.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.619 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds