Wall clock time and date at job start Tue Mar 31 2020 16:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86797 * 120.00257 * 2 1 4 4 H 1.48496 * 109.47309 * 270.93248 * 3 2 1 5 5 H 1.48503 * 109.46721 * 30.93629 * 3 2 1 6 6 H 1.48506 * 109.46871 * 150.93230 * 3 2 1 7 7 C 1.40038 * 119.99578 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00386 * 340.28247 * 7 2 1 9 9 C 1.41543 * 119.99791 * 160.28089 * 7 2 1 10 10 C 1.41167 * 120.99650 * 333.13082 * 9 7 2 11 11 C 1.37599 * 119.01352 * 179.97438 * 10 9 7 12 12 N 1.32070 * 121.11377 * 359.97438 * 11 10 9 13 13 C 1.32484 * 122.22949 * 359.97438 * 12 11 10 14 14 N 1.39542 * 119.57713 * 180.02562 * 13 12 11 15 15 C 1.39563 * 120.08511 * 132.06191 * 14 13 12 16 16 N 1.32385 * 129.79255 * 359.97438 * 15 14 13 17 17 C 1.29443 * 117.87977 * 180.02562 * 16 15 14 18 18 O 1.35231 * 124.57301 * 179.97438 * 17 16 15 19 19 S 1.70777 * 110.86053 * 0.23214 * 17 16 15 20 20 C 1.38623 * 117.64496 * 180.02562 * 15 14 13 21 21 C 1.40712 * 119.90219 * 359.97438 * 20 15 14 22 22 O 1.35267 * 119.85797 * 179.97438 * 21 20 15 23 23 N 1.32158 * 120.29069 * 359.97438 * 21 20 15 24 24 C 1.33890 * 121.07320 * 0.02562 * 23 21 20 25 25 N 1.31507 * 119.36870 * 180.02562 * 24 23 21 26 26 C 1.38593 * 120.83785 * 0.27438 * 13 12 11 27 27 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.49717 * 359.97395 * 10 9 7 29 29 H 1.08000 * 119.44599 * 180.02562 * 11 10 9 30 30 H 0.96696 * 114.00201 * 90.00225 * 18 17 16 31 31 H 0.96700 * 113.99909 * 270.02694 * 22 21 20 32 32 H 0.97001 * 119.99888 * 359.97438 * 25 24 23 33 33 H 1.08004 * 120.59922 * 179.72482 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4692 2.0578 -1.3998 5 1 1.4489 2.6468 0.7198 6 1 3.5487 1.4344 0.6803 7 6 2.0075 -1.2128 -0.0005 8 1 1.5149 -2.1209 0.3146 9 6 3.3606 -1.2486 -0.4142 10 6 3.8685 -0.2953 -1.3231 11 6 5.1907 -0.3680 -1.6971 12 7 5.9840 -1.3101 -1.2202 13 6 5.5571 -2.2270 -0.3646 14 7 6.4436 -3.1972 0.1046 15 6 6.5195 -3.4735 1.4704 16 7 5.8512 -2.9404 2.4812 17 6 6.1081 -3.3749 3.6731 18 8 5.5079 -2.9271 4.7992 19 16 7.3125 -4.5850 3.6327 20 6 7.4178 -4.4463 1.8809 21 6 8.2111 -5.1146 0.9301 22 8 9.0877 -6.0632 1.3316 23 7 8.1035 -4.8194 -0.3536 24 6 7.2443 -3.8844 -0.7781 25 7 7.1642 -3.6179 -2.0634 26 6 4.2399 -2.2380 0.0664 27 1 -0.4850 0.8401 -0.0004 28 1 3.2288 0.4796 -1.7191 29 1 5.5866 0.3580 -2.3918 30 1 4.7063 -3.4127 5.0374 31 1 9.9689 -5.7225 1.5380 32 1 7.7248 -4.0967 -2.6938 33 1 3.8949 -2.9900 0.7606 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155447928.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:46 Heat of formation + Delta-G solvation = 61.482573 kcal Electronic energy + Delta-G solvation = -25259.268860 eV Core-core repulsion = 21413.483601 eV Total energy + Delta-G solvation = -3845.785260 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.88358 -40.64249 -40.34374 -38.96140 -38.16822 -36.21929 -35.31976 -34.02932 -33.28855 -31.18779 -30.04909 -28.02989 -26.83357 -25.44652 -23.88195 -23.62190 -22.90796 -21.10647 -20.32517 -20.02732 -19.62383 -18.64258 -18.16762 -17.90064 -17.45944 -17.19490 -16.81034 -16.66214 -16.23494 -16.08089 -15.57837 -15.04016 -14.79387 -14.51808 -14.20940 -13.58856 -13.51375 -13.40233 -13.07617 -12.87021 -12.84075 -12.66123 -12.29970 -11.74895 -11.54688 -11.33802 -11.28910 -10.89119 -10.81968 -10.32397 -10.24641 -10.05585 -9.79093 -9.05168 -8.77116 -6.76781 -1.41968 -0.32465 -0.00869 0.06685 0.46503 0.67424 0.88395 0.99078 1.24693 1.38578 1.46060 2.06280 2.10669 2.22732 2.35064 2.55425 2.98791 3.28938 3.41828 3.67610 3.95197 4.21450 4.30004 4.41813 4.49481 4.61538 4.80459 4.94201 5.17643 5.22648 5.45411 5.61180 5.91619 6.04922 6.15566 6.25778 6.40936 6.44451 6.50599 6.60703 7.22806 7.45462 8.01471 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.004623 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.744829 B = 6055.056611 C = 7447.677048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.061 3.939 3 Si 0.966 3.034 4 H -0.245 1.245 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.462 4.462 8 H 0.064 0.936 9 C 0.106 3.894 10 C -0.301 4.301 11 C 0.135 3.865 12 N -0.555 5.555 13 C 0.348 3.652 14 N -0.448 5.448 15 C 0.406 3.594 16 N -0.554 5.554 17 C 0.290 3.710 18 O -0.431 6.431 19 S 0.367 5.633 20 C -0.396 4.396 21 C 0.514 3.486 22 O -0.463 6.463 23 N -0.567 5.567 24 C 0.558 3.442 25 N -0.730 5.730 26 C -0.241 4.241 27 H 0.302 0.698 28 H 0.124 0.876 29 H 0.168 0.832 30 H 0.440 0.560 31 H 0.441 0.559 32 H 0.355 0.645 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.543 -8.113 12.870 21.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.159 4.159 3 Si 0.788 3.212 4 H -0.170 1.170 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.082 0.918 9 C 0.097 3.903 10 C -0.323 4.323 11 C -0.019 4.019 12 N -0.271 5.271 13 C 0.126 3.874 14 N -0.154 5.154 15 C 0.165 3.835 16 N -0.286 5.286 17 C -0.026 4.026 18 O -0.243 6.243 19 S 0.615 5.385 20 C -0.526 4.526 21 C 0.298 3.702 22 O -0.275 6.275 23 N -0.301 5.301 24 C 0.188 3.812 25 N -0.367 5.367 26 C -0.266 4.266 27 H 0.113 0.887 28 H 0.141 0.859 29 H 0.185 0.815 30 H 0.306 0.694 31 H 0.308 0.692 32 H 0.174 0.826 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 15.007 -7.824 11.973 20.731 hybrid contribution -1.240 0.586 -0.217 1.388 sum 13.767 -7.239 11.756 19.497 Atomic orbital electron populations 1.69643 1.09114 1.32327 1.33445 1.26781 0.95298 1.04064 0.89735 0.85539 0.78923 0.76354 0.80335 1.17003 1.19425 1.19078 1.19401 0.93912 0.96340 1.39594 0.91793 1.17871 0.92656 0.90548 0.89194 1.22157 0.98259 1.05913 1.05996 1.22286 0.89692 0.93921 0.96050 1.66881 1.39317 1.05450 1.15459 1.17686 0.86122 0.89022 0.94619 1.41673 1.36951 1.34458 1.02269 1.17487 0.90889 0.91243 0.83835 1.65274 1.31746 1.32202 0.99333 1.24434 0.97790 0.93612 0.86769 1.84752 1.46239 1.61024 1.32326 1.83353 1.33896 1.29288 0.91982 1.24527 1.13490 1.11988 1.02607 1.18622 0.85654 0.80457 0.85458 1.84565 1.26469 1.30294 1.86185 1.69625 1.24796 1.18915 1.16794 1.19278 0.85728 0.86207 0.89947 1.70155 1.33296 1.34682 0.98541 1.21381 0.91625 1.05854 1.07790 0.88715 0.85865 0.81467 0.69368 0.69219 0.82601 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.60 13.92 21.84 0.30 -42.30 16 2 C 0.06 3.13 5.42 85.29 0.46 3.59 16 3 Si 0.97 41.48 24.57 68.60 1.69 43.17 16 4 H -0.25 -9.74 6.44 99.48 0.64 -9.10 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 6 H -0.27 -12.25 7.04 99.48 0.70 -11.55 16 7 C -0.46 -25.70 9.63 23.52 0.23 -25.47 16 8 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 9 C 0.11 5.65 5.18 -21.11 -0.11 5.54 16 10 C -0.30 -14.77 7.43 22.84 0.17 -14.60 16 11 C 0.14 6.27 11.15 84.51 0.94 7.21 16 12 N -0.56 -27.60 9.21 -193.47 -1.78 -29.38 16 13 C 0.35 17.24 6.20 132.72 0.82 18.07 16 14 N -0.45 -19.33 2.94 -354.89 -1.04 -20.37 16 15 C 0.41 14.40 7.13 132.75 0.95 15.35 16 16 N -0.55 -18.72 9.43 -313.26 -2.96 -21.68 16 17 C 0.29 6.35 8.57 130.59 1.12 7.47 16 18 O -0.43 -6.96 13.62 -85.13 -1.16 -8.12 16 19 S 0.37 5.19 23.19 -56.49 -1.31 3.88 16 20 C -0.40 -10.02 6.51 22.97 0.15 -9.87 16 21 C 0.51 12.84 7.80 85.25 0.67 13.51 16 22 O -0.46 -6.95 13.55 -85.51 -1.16 -8.11 16 23 N -0.57 -18.89 10.45 -311.16 -3.25 -22.15 16 24 C 0.56 22.93 8.32 261.71 2.18 25.11 16 25 N -0.73 -31.85 12.52 -60.06 -0.75 -32.61 16 26 C -0.24 -12.43 8.81 22.99 0.20 -12.22 16 27 H 0.30 13.85 8.29 -92.71 -0.77 13.08 16 28 H 0.12 5.72 4.42 -2.91 -0.01 5.71 16 29 H 0.17 6.38 8.06 -2.91 -0.02 6.36 16 30 H 0.44 2.33 9.06 -74.06 -0.67 1.66 16 31 H 0.44 1.41 9.06 -74.06 -0.67 0.74 16 32 H 0.36 13.76 8.89 -92.71 -0.82 12.93 16 33 H 0.10 5.29 7.57 -2.91 -0.02 5.27 16 Total: -1.00 -80.34 309.57 -4.62 -84.96 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -0.97 Total: 19.02 kcal Atomic # 6 Polarization: 25.91 SS G_CDS: 7.78 Total: 33.68 kcal Atomic # 7 Polarization: -159.00 SS G_CDS: -9.48 Total: -168.48 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -2.32 Total: -16.22 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.69 Total: 43.17 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -1.31 Total: 3.88 kcal Total: -80.34 -4.62 -84.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155447928.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.438 kcal (2) G-P(sol) polarization free energy of solvation -80.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds