Wall clock time and date at job start Tue Mar 31 2020 17:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42100 * 110.54211 * 2 1 4 4 O 1.42101 * 110.54380 * 223.24858 * 2 1 3 5 5 N 1.65604 * 104.45215 * 111.62197 * 2 1 3 6 6 C 1.47576 * 134.49351 * 89.99681 * 5 2 1 7 7 C 1.53941 * 86.11939 * 155.36309 * 6 5 2 8 8 N 1.46495 * 113.74410 * 137.95322 * 7 6 5 9 9 C 1.38406 * 120.00445 * 154.99943 * 8 7 6 10 10 N 1.32747 * 119.43116 * 0.02586 * 9 8 7 11 11 C 1.31476 * 121.73954 * 179.97438 * 10 9 8 12 12 C 1.40789 * 120.38666 * 0.02562 * 11 10 9 13 13 C 1.41197 * 120.56346 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99804 * 23.65384 * 13 12 11 15 15 C 1.39867 * 119.99811 * 203.64898 * 13 12 11 16 16 N 1.30898 * 120.00485 * 17.65223 * 15 13 12 17 17 Si 1.86797 * 119.99826 * 197.64784 * 15 13 12 18 18 H 1.48504 * 109.47180 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47192 * 120.00397 * 17 15 13 20 20 H 1.48498 * 109.47335 * 240.00084 * 17 15 13 21 21 C 1.41282 * 118.87287 * 359.97438 * 12 11 10 22 22 C 1.36673 * 118.39920 * 0.02562 * 21 12 11 23 23 Cl 1.73598 * 120.26223 * 180.02562 * 22 21 12 24 24 C 1.47578 * 134.49093 * 270.00461 * 5 2 1 25 25 H 1.09007 * 109.47021 * 308.37292 * 1 2 3 26 26 H 1.08994 * 109.47109 * 68.37567 * 1 2 3 27 27 H 1.09001 * 109.46901 * 188.38220 * 1 2 3 28 28 H 1.09006 * 113.76932 * 41.05911 * 6 5 2 29 29 H 1.09000 * 113.87416 * 269.67983 * 6 5 2 30 30 H 1.09004 * 113.74322 * 269.16263 * 7 6 5 31 31 H 0.97006 * 119.99815 * 335.00464 * 8 7 6 32 32 H 1.07997 * 119.80444 * 180.27813 * 11 10 9 33 33 H 0.96998 * 120.00561 * 179.97438 * 16 15 13 34 34 H 1.08004 * 120.80612 * 179.97438 * 21 12 11 35 35 H 1.09001 * 113.76980 * 90.33942 * 24 5 2 36 36 H 1.08999 * 113.77071 * 318.93707 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2274 -0.5909 1.4908 6 6 2.4854 -1.9386 2.0340 7 6 3.3358 -1.2304 3.1041 8 7 3.1496 -1.7658 4.4549 9 6 4.1533 -1.6289 5.3980 10 7 5.2799 -1.0100 5.0666 11 6 6.2623 -0.8542 5.9264 12 6 6.1440 -1.3472 7.2398 13 6 7.1965 -1.1815 8.1664 14 1 7.9118 -0.3834 8.0339 15 6 7.3124 -2.0511 9.2558 16 7 6.6869 -3.2009 9.2450 17 14 8.3601 -1.5716 10.7261 18 1 8.9566 -0.2317 10.4930 19 1 7.5131 -1.5306 11.9452 20 1 9.4431 -2.5709 10.9092 21 6 4.9538 -2.0095 7.6153 22 6 3.9634 -2.1447 6.6833 23 17 2.4807 -2.9495 7.0928 24 6 2.4854 0.0187 2.8098 25 1 -0.3633 0.6380 0.8057 26 1 -0.3633 0.3787 -0.9553 27 1 -0.3633 -1.0167 0.1498 28 1 3.0628 -2.5782 1.3664 29 1 1.5984 -2.4309 2.4326 30 1 4.3854 -1.1231 2.8303 31 1 2.3229 -2.2164 4.6884 32 1 7.1636 -0.3416 5.6245 33 1 6.7676 -3.8041 10.0003 34 1 4.8299 -2.4003 8.6145 35 1 1.5973 0.1031 3.4361 36 1 3.0628 0.9420 2.7617 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157443039.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:56 Heat of formation + Delta-G solvation = -4.507558 kcal Electronic energy + Delta-G solvation = -23201.690699 eV Core-core repulsion = 19454.151386 eV Total energy + Delta-G solvation = -3747.539313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.52894 -38.43073 -37.21396 -36.07684 -35.65698 -34.66539 -33.15737 -30.59330 -29.80867 -29.41657 -27.27585 -26.21988 -24.81928 -22.46524 -21.33089 -20.30628 -18.86186 -17.72099 -17.50395 -17.00349 -16.64040 -16.22100 -15.89971 -15.30322 -14.52852 -14.32224 -14.20984 -13.95249 -13.51390 -13.45972 -13.26037 -13.05604 -12.62788 -12.41035 -12.24628 -12.16389 -12.14528 -11.81684 -11.54312 -11.44312 -11.29264 -11.25450 -11.09438 -10.96816 -10.78371 -10.42629 -9.91300 -9.60281 -9.16477 -8.93653 -8.36039 -8.21530 -7.02792 -6.79627 -4.38399 0.04338 2.37569 2.43339 2.72965 3.02722 3.07005 3.09956 3.12262 3.71087 3.82956 3.84580 4.06009 4.37794 4.45358 4.56827 4.63112 4.84842 5.22739 5.34472 5.41150 5.46619 5.48005 5.72445 5.82322 5.83851 6.10872 6.37485 6.43058 6.57351 6.86566 7.00453 7.09024 7.56517 7.61436 7.98356 8.24930 8.31588 8.60028 8.65415 9.43613 10.05118 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.002691 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.998594 B =10403.270944 C =11146.453305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.679 4.679 2 S 2.632 3.368 3 O -0.952 6.952 4 O -0.954 6.954 5 N -1.034 6.034 6 C 0.109 3.891 7 C 0.153 3.847 8 N -0.728 5.728 9 C 0.282 3.718 10 N -0.499 5.499 11 C 0.015 3.985 12 C 0.041 3.959 13 C -0.450 4.450 14 H 0.084 0.916 15 C 0.073 3.927 16 N -0.795 5.795 17 Si 0.910 3.090 18 H -0.259 1.259 19 H -0.272 1.272 20 H -0.274 1.274 21 C -0.091 4.091 22 C -0.098 4.098 23 Cl -0.115 7.115 24 C 0.102 3.898 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.125 0.875 31 H 0.398 0.602 32 H 0.135 0.865 33 H 0.283 0.717 34 H 0.140 0.860 35 H 0.081 0.919 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.367 1.958 -9.032 14.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.828 4.828 2 S 2.726 3.274 3 O -0.943 6.943 4 O -0.945 6.945 5 N -0.873 5.873 6 C -0.018 4.018 7 C 0.043 3.957 8 N -0.368 5.368 9 C 0.049 3.951 10 N -0.213 5.213 11 C -0.144 4.144 12 C 0.035 3.965 13 C -0.480 4.480 14 H 0.102 0.898 15 C -0.145 4.145 16 N -0.420 5.420 17 Si 0.735 3.265 18 H -0.183 1.183 19 H -0.197 1.197 20 H -0.200 1.200 21 C -0.118 4.118 22 C -0.130 4.130 23 Cl -0.087 7.087 24 C -0.025 4.025 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.143 0.857 31 H 0.235 0.765 32 H 0.153 0.847 33 H 0.094 0.906 34 H 0.157 0.843 35 H 0.099 0.901 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.797 2.426 -10.700 15.394 hybrid contribution -0.998 -0.626 1.974 2.299 sum -11.796 1.800 -8.726 14.782 Atomic orbital electron populations 1.30660 1.29790 1.11284 1.11052 1.04284 0.77125 0.73825 0.72167 1.93608 1.77519 1.37620 1.85505 1.93599 1.77586 1.61963 1.61360 1.60051 1.84308 1.18332 1.24635 1.23276 0.98950 0.84682 0.94883 1.22587 1.00251 0.91034 0.81843 1.43699 1.17678 1.66352 1.09045 1.17356 0.90140 1.01250 0.86363 1.66719 1.00220 1.17468 1.36931 1.22355 0.96274 1.06218 0.89552 1.18323 0.92605 0.92909 0.92631 1.19396 1.10115 1.12553 1.05931 0.89777 1.25916 0.95493 0.93600 0.99469 1.69795 1.35813 1.06175 1.30266 0.86216 0.79765 0.79990 0.80560 1.18283 1.19701 1.19954 1.21305 0.90648 1.00855 0.98996 1.20914 0.89426 1.07175 0.95491 1.98244 1.36798 1.79801 1.93857 1.23563 0.99271 0.99987 0.79655 0.85582 0.85742 0.85635 0.89157 0.90007 0.85714 0.76530 0.84712 0.90625 0.84280 0.90061 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -4.26 10.99 101.05 1.11 -3.15 16 2 S 2.63 27.54 6.57 -107.50 -0.71 26.84 16 3 O -0.95 -13.39 18.02 -57.54 -1.04 -14.42 16 4 O -0.95 -13.06 18.02 -57.54 -1.04 -14.09 16 5 N -1.03 -11.21 3.99 -118.93 -0.48 -11.69 16 6 C 0.11 1.15 8.67 -2.98 -0.03 1.13 16 7 C 0.15 2.11 4.45 -70.15 -0.31 1.80 16 8 N -0.73 -11.54 5.45 -55.37 -0.30 -11.84 16 9 C 0.28 5.72 7.48 -155.06 -1.16 4.56 16 10 N -0.50 -10.78 9.06 -11.75 -0.11 -10.89 16 11 C 0.02 0.34 10.97 -16.74 -0.18 0.16 16 12 C 0.04 0.99 5.59 -106.65 -0.60 0.40 16 13 C -0.45 -10.89 9.06 -37.85 -0.34 -11.23 16 14 H 0.08 1.94 7.90 -52.49 -0.41 1.53 16 15 C 0.07 1.70 5.17 -17.34 -0.09 1.61 16 16 N -0.79 -19.20 10.92 55.54 0.61 -18.59 16 17 Si 0.91 17.51 29.59 -169.99 -5.03 12.48 16 18 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 19 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 21 C -0.09 -2.17 8.53 -38.99 -0.33 -2.50 16 22 C -0.10 -2.09 6.32 -39.57 -0.25 -2.34 16 23 Cl -0.11 -2.06 27.56 -51.86 -1.43 -3.48 16 24 C 0.10 1.21 8.71 -2.97 -0.03 1.19 16 25 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 26 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.12 0.64 8.14 -51.92 -0.42 0.21 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 30 H 0.13 1.98 7.37 -51.93 -0.38 1.60 16 31 H 0.40 5.65 7.34 -40.82 -0.30 5.35 16 32 H 0.14 2.82 8.06 -52.49 -0.42 2.40 16 33 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 34 H 0.14 3.46 6.19 -52.48 -0.32 3.13 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 338.60 15.07 5.10 5.10 Total: -1.00 -30.13 338.60 -10.56 -40.69 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -3.94 Total: 8.27 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.21 Total: -8.37 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.28 Total: -53.01 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -2.07 Total: -28.52 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 16 Polarization: 27.54 SS G_CDS: -0.71 Total: 26.84 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -1.43 Total: -3.48 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.13 -10.56 -40.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157443039.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.180 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds