Wall clock time and date at job start Tue Mar 31 2020 17:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42100 * 110.54211 * 2 1 4 4 O 1.42101 * 110.54380 * 223.24858 * 2 1 3 5 5 N 1.65604 * 104.45215 * 111.62197 * 2 1 3 6 6 C 1.47576 * 134.49351 * 89.99681 * 5 2 1 7 7 C 1.53941 * 86.11939 * 155.36309 * 6 5 2 8 8 N 1.46495 * 113.74410 * 137.95322 * 7 6 5 9 9 C 1.38406 * 120.00445 * 154.99943 * 8 7 6 10 10 N 1.32747 * 119.43116 * 0.02586 * 9 8 7 11 11 C 1.31476 * 121.73954 * 179.97438 * 10 9 8 12 12 C 1.40789 * 120.38666 * 0.02562 * 11 10 9 13 13 C 1.41197 * 120.56346 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99804 * 23.65384 * 13 12 11 15 15 C 1.39867 * 119.99811 * 203.64898 * 13 12 11 16 16 N 1.30898 * 120.00485 * 17.65223 * 15 13 12 17 17 Si 1.86797 * 119.99826 * 197.64784 * 15 13 12 18 18 H 1.48504 * 109.47180 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47192 * 120.00397 * 17 15 13 20 20 H 1.48498 * 109.47335 * 240.00084 * 17 15 13 21 21 C 1.41282 * 118.87287 * 359.97438 * 12 11 10 22 22 C 1.36673 * 118.39920 * 0.02562 * 21 12 11 23 23 Cl 1.73598 * 120.26223 * 180.02562 * 22 21 12 24 24 C 1.47578 * 134.49093 * 270.00461 * 5 2 1 25 25 H 1.09007 * 109.47021 * 308.37292 * 1 2 3 26 26 H 1.08994 * 109.47109 * 68.37567 * 1 2 3 27 27 H 1.09001 * 109.46901 * 188.38220 * 1 2 3 28 28 H 1.09006 * 113.76932 * 41.05911 * 6 5 2 29 29 H 1.09000 * 113.87416 * 269.67983 * 6 5 2 30 30 H 1.09004 * 113.74322 * 269.16263 * 7 6 5 31 31 H 0.97006 * 119.99815 * 335.00464 * 8 7 6 32 32 H 1.07997 * 119.80444 * 180.27813 * 11 10 9 33 33 H 0.96998 * 120.00561 * 179.97438 * 16 15 13 34 34 H 1.08004 * 120.80612 * 179.97438 * 21 12 11 35 35 H 1.09001 * 113.76980 * 90.33942 * 24 5 2 36 36 H 1.08999 * 113.77071 * 318.93707 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2274 -0.5909 1.4908 6 6 2.4854 -1.9386 2.0340 7 6 3.3358 -1.2304 3.1041 8 7 3.1496 -1.7658 4.4549 9 6 4.1533 -1.6289 5.3980 10 7 5.2799 -1.0100 5.0666 11 6 6.2623 -0.8542 5.9264 12 6 6.1440 -1.3472 7.2398 13 6 7.1965 -1.1815 8.1664 14 1 7.9118 -0.3834 8.0339 15 6 7.3124 -2.0511 9.2558 16 7 6.6869 -3.2009 9.2450 17 14 8.3601 -1.5716 10.7261 18 1 8.9566 -0.2317 10.4930 19 1 7.5131 -1.5306 11.9452 20 1 9.4431 -2.5709 10.9092 21 6 4.9538 -2.0095 7.6153 22 6 3.9634 -2.1447 6.6833 23 17 2.4807 -2.9495 7.0928 24 6 2.4854 0.0187 2.8098 25 1 -0.3633 0.6380 0.8057 26 1 -0.3633 0.3787 -0.9553 27 1 -0.3633 -1.0167 0.1498 28 1 3.0628 -2.5782 1.3664 29 1 1.5984 -2.4309 2.4326 30 1 4.3854 -1.1231 2.8303 31 1 2.3229 -2.2164 4.6884 32 1 7.1636 -0.3416 5.6245 33 1 6.7676 -3.8041 10.0003 34 1 4.8299 -2.4003 8.6145 35 1 1.5973 0.1031 3.4361 36 1 3.0628 0.9420 2.7617 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157443039.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:55 Heat of formation + Delta-G solvation = -25.911438 kcal Electronic energy + Delta-G solvation = -23202.618841 eV Core-core repulsion = 19454.151386 eV Total energy + Delta-G solvation = -3748.467454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80192 -39.84684 -38.16494 -37.23926 -37.02787 -36.26837 -34.68040 -32.33052 -31.06012 -30.31111 -28.48659 -27.12862 -26.44660 -24.05070 -22.99782 -21.52711 -19.74511 -19.27411 -18.60662 -18.43919 -17.74678 -17.23750 -17.10032 -16.76208 -16.00869 -15.77274 -15.32811 -15.21754 -14.73840 -14.59592 -14.03222 -13.98151 -13.87880 -13.62222 -13.53654 -13.31937 -13.22009 -13.16424 -13.13374 -12.87349 -12.71872 -12.51855 -12.34849 -12.17563 -12.00441 -11.92949 -11.55028 -11.22278 -10.50526 -10.08762 -9.99203 -9.93507 -8.70547 -8.43598 -6.16659 -0.74640 0.69383 1.01847 1.44898 1.46180 1.53831 1.54346 1.59011 2.24965 2.67891 2.75718 2.98235 3.01668 3.52745 3.63177 3.83819 4.06412 4.08571 4.16164 4.32176 4.55145 4.56766 4.60415 4.79886 4.80475 4.91175 4.93580 5.06902 5.15732 5.29917 5.38918 5.48547 5.84122 5.84713 6.35172 6.60705 6.79517 6.86066 6.93052 7.76221 8.35533 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.002691 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.998594 B =10403.270944 C =11146.453305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.635 3.365 3 O -0.997 6.997 4 O -0.994 6.994 5 N -1.038 6.038 6 C 0.120 3.880 7 C 0.134 3.866 8 N -0.714 5.714 9 C 0.295 3.705 10 N -0.508 5.508 11 C 0.008 3.992 12 C 0.012 3.988 13 C -0.482 4.482 14 H 0.084 0.916 15 C 0.036 3.964 16 N -0.829 5.829 17 Si 0.980 3.020 18 H -0.257 1.257 19 H -0.268 1.268 20 H -0.270 1.270 21 C -0.104 4.104 22 C -0.110 4.110 23 Cl -0.082 7.082 24 C 0.110 3.890 25 H 0.145 0.855 26 H 0.146 0.854 27 H 0.149 0.851 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.409 0.591 32 H 0.144 0.856 33 H 0.288 0.712 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.958 1.809 -9.515 16.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.735 3.265 3 O -0.988 6.988 4 O -0.984 6.984 5 N -0.877 5.877 6 C -0.006 4.006 7 C 0.025 3.975 8 N -0.354 5.354 9 C 0.059 3.941 10 N -0.224 5.224 11 C -0.150 4.150 12 C 0.006 3.994 13 C -0.512 4.512 14 H 0.102 0.898 15 C -0.179 4.179 16 N -0.455 5.455 17 Si 0.801 3.199 18 H -0.180 1.180 19 H -0.192 1.192 20 H -0.195 1.195 21 C -0.131 4.131 22 C -0.143 4.143 23 Cl -0.054 7.054 24 C -0.017 4.017 25 H 0.164 0.836 26 H 0.164 0.836 27 H 0.167 0.833 28 H 0.107 0.893 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.248 0.752 32 H 0.161 0.839 33 H 0.099 0.901 34 H 0.142 0.858 35 H 0.125 0.875 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.364 2.276 -11.220 17.597 hybrid contribution -0.416 -0.603 1.944 2.078 sum -13.780 1.672 -9.276 16.695 Atomic orbital electron populations 1.30366 1.23107 1.13564 1.13188 1.03931 0.79270 0.72153 0.71167 1.93552 1.79955 1.39455 1.85824 1.93549 1.79914 1.62622 1.62364 1.59844 1.85485 1.18175 1.24162 1.23288 0.99521 0.84532 0.93242 1.22753 0.99942 0.93445 0.81370 1.43712 1.16824 1.65813 1.09077 1.17663 0.90314 0.99182 0.86897 1.66809 1.00662 1.18281 1.36660 1.22533 0.96992 1.06164 0.89360 1.18581 0.93271 0.94115 0.93432 1.19608 1.10835 1.13422 1.07356 0.89790 1.26665 0.96548 0.93152 1.01532 1.69845 1.37372 1.07059 1.31245 0.85179 0.78088 0.79582 0.77036 1.18040 1.19246 1.19495 1.21243 0.91472 1.01495 0.98927 1.20968 0.90431 1.07367 0.95526 1.98239 1.34371 1.79083 1.93746 1.23454 0.99615 0.98216 0.80450 0.83647 0.83611 0.83292 0.89266 0.86543 0.88461 0.75244 0.83884 0.90111 0.85834 0.87515 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.11 10.99 113.37 1.25 -3.87 16 2 S 2.64 50.73 6.57 -56.49 -0.37 50.36 16 3 O -1.00 -27.63 18.02 -127.65 -2.30 -29.93 16 4 O -0.99 -26.29 18.02 -127.65 -2.30 -28.60 16 5 N -1.04 -20.46 3.99 -530.18 -2.12 -22.58 16 6 C 0.12 2.26 8.67 86.48 0.75 3.01 16 7 C 0.13 3.54 4.45 46.75 0.21 3.75 16 8 N -0.71 -21.49 5.45 -329.10 -1.79 -23.28 16 9 C 0.29 11.87 7.48 133.32 1.00 12.86 16 10 N -0.51 -22.31 9.06 -191.09 -1.73 -24.04 16 11 C 0.01 0.36 10.97 85.37 0.94 1.30 16 12 C 0.01 0.58 5.59 -21.18 -0.12 0.47 16 13 C -0.48 -24.14 9.06 23.39 0.21 -23.93 16 14 H 0.08 4.03 7.90 -2.91 -0.02 4.00 16 15 C 0.04 1.69 5.17 85.23 0.44 2.13 16 16 N -0.83 -41.05 10.92 21.82 0.24 -40.81 16 17 Si 0.98 36.38 29.59 68.60 2.03 38.41 16 18 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 19 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 20 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 21 C -0.10 -5.08 8.53 22.65 0.19 -4.88 16 22 C -0.11 -4.69 6.32 22.28 0.14 -4.55 16 23 Cl -0.08 -2.83 27.56 -2.72 -0.07 -2.91 16 24 C 0.11 2.42 8.71 86.48 0.75 3.17 16 25 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.15 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.12 1.42 8.12 -2.39 -0.02 1.40 16 30 H 0.10 3.13 7.37 -2.39 -0.02 3.12 16 31 H 0.41 10.48 7.34 -92.70 -0.68 9.80 16 32 H 0.14 6.23 8.06 -2.91 -0.02 6.21 16 33 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 34 H 0.12 6.35 6.19 -2.91 -0.02 6.34 16 35 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -67.84 338.60 -2.21 -70.04 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.45 Total: 23.88 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 5.76 Total: -10.54 kcal Atomic # 7 Polarization: -105.31 SS G_CDS: -5.40 Total: -110.72 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: -4.60 Total: -58.53 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Atomic # 16 Polarization: 50.73 SS G_CDS: -0.37 Total: 50.36 kcal Atomic # 17 Polarization: -2.83 SS G_CDS: -0.07 Total: -2.91 kcal Total: -67.84 -2.21 -70.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157443039.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.133 kcal (2) G-P(sol) polarization free energy of solvation -67.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds