Wall clock time and date at job start Tue Mar 31 2020 16:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43193 * 120.00493 * 52.40372 * 3 2 1 5 5 N 3.51039 * 140.68868 * 52.40014 * 2 1 3 6 6 C 1.41155 * 119.99656 * 232.40024 * 3 2 1 7 7 C 1.38988 * 120.00109 * 5.01980 * 6 3 2 8 8 H 1.07997 * 120.00007 * 334.97535 * 7 6 3 9 9 C 1.40836 * 120.00213 * 154.97708 * 7 6 3 10 10 N 1.30336 * 119.99966 * 4.74385 * 9 7 6 11 11 Si 1.86804 * 120.00184 * 184.74932 * 9 7 6 12 12 H 1.48496 * 109.46923 * 89.99952 * 11 9 7 13 13 H 1.48503 * 109.47040 * 209.99982 * 11 9 7 14 14 H 1.48497 * 109.47124 * 329.99810 * 11 9 7 15 15 N 1.38335 * 120.00029 * 185.02179 * 6 3 2 16 16 C 1.39290 * 120.00058 * 120.15692 * 15 6 3 17 17 N 1.32305 * 119.74805 * 354.89262 * 16 15 6 18 18 C 1.31970 * 121.70141 * 179.97438 * 17 16 15 19 19 C 1.38087 * 120.99318 * 0.02562 * 18 17 16 20 20 C 1.38767 * 119.38176 * 0.25026 * 19 18 17 21 21 C 1.38909 * 118.44189 * 359.51130 * 20 19 18 22 22 N 1.40097 * 120.51522 * 180.21834 * 21 20 19 23 23 C 1.34775 * 120.00135 * 334.92909 * 22 21 20 24 24 O 1.21296 * 119.99602 * 4.19967 * 23 22 21 25 25 C 1.50693 * 120.00351 * 184.19791 * 23 22 21 26 26 Cl 1.80295 * 109.47611 * 180.02562 * 25 23 22 27 27 H 0.96999 * 120.00400 * 184.99823 * 10 9 7 28 28 H 0.96998 * 120.00313 * 300.15589 * 15 6 3 29 29 H 1.08002 * 119.50628 * 180.02562 * 18 17 16 30 30 H 1.08001 * 120.30664 * 179.97438 * 19 18 17 31 31 H 1.08008 * 120.77815 * 179.72482 * 20 19 18 32 32 H 0.97003 * 119.99933 * 154.92507 * 22 21 20 33 33 H 1.09000 * 109.47003 * 300.00032 * 25 23 22 34 34 H 1.08998 * 109.47423 * 59.99639 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2844 -0.7556 -0.9825 5 7 3.8520 -1.3569 -1.7620 6 6 3.2734 0.7468 0.9686 7 6 2.5821 1.3961 1.9846 8 1 1.5510 1.6823 1.8389 9 6 3.2262 1.6807 3.2043 10 7 4.4950 1.4193 3.3477 11 14 2.2620 2.4326 4.6166 12 1 1.6900 1.3502 5.4570 13 1 3.1665 3.2738 5.4410 14 1 1.1632 3.2715 4.0745 15 7 4.6527 0.8320 0.9065 16 6 5.2685 2.0743 0.7733 17 7 4.5295 3.1586 0.6049 18 6 5.0722 4.3545 0.4751 19 6 6.4426 4.5210 0.5099 20 6 7.2591 3.4118 0.6788 21 6 6.6616 2.1655 0.8181 22 7 7.4443 1.0172 0.9955 23 6 8.7149 0.9917 0.5465 24 8 9.2054 1.9875 0.0576 25 6 9.5261 -0.2738 0.6521 26 17 11.1719 0.0087 -0.0277 27 1 4.9223 1.5472 4.2091 28 1 5.1911 0.0267 0.9557 29 1 4.4351 5.2160 0.3396 30 1 6.8750 5.5048 0.4021 31 1 8.3339 3.5155 0.7049 32 1 7.0719 0.2405 1.4415 33 1 9.6109 -0.5648 1.6991 34 1 9.0332 -1.0691 0.0929 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158214641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:55 Heat of formation + Delta-G solvation = 68.480926 kcal Electronic energy + Delta-G solvation = -25029.807673 eV Core-core repulsion = 21182.282179 eV Total energy + Delta-G solvation = -3847.525495 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.72354 -39.10206 -37.19117 -36.22322 -35.29503 -34.96172 -34.71244 -33.55422 -31.52214 -31.05549 -29.31255 -27.78465 -27.12413 -23.68507 -22.62986 -21.25583 -20.60592 -19.04743 -18.41320 -17.34618 -17.11884 -16.74864 -16.25302 -15.92730 -15.61879 -14.80948 -14.54836 -14.24401 -13.93167 -13.78594 -13.59019 -13.16632 -12.88741 -12.68120 -12.60894 -12.31387 -11.97230 -11.89081 -11.70749 -11.56030 -11.48779 -11.06135 -11.00235 -10.93577 -10.76899 -10.73663 -10.72272 -10.12748 -10.04298 -9.95953 -8.91055 -8.64705 -8.08320 -7.70577 -6.83527 -5.41014 1.53189 1.72813 1.82489 2.30714 2.48886 2.69780 2.76048 2.86852 3.00240 3.39821 3.68380 3.84340 4.03713 4.23371 4.31449 4.32988 4.50801 4.66071 4.77920 5.07822 5.22355 5.31145 5.52718 5.58557 5.64529 5.87361 6.18010 6.21463 6.34558 6.50706 6.65192 6.96512 7.11061 7.25574 7.37086 7.58858 7.76738 7.92690 8.05468 8.28595 8.82041 8.93766 9.13326 9.19949 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011301 B = 0.004398 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.163591 B = 6365.149328 C = 7392.899247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C 0.327 3.673 3 C -0.313 4.313 4 C 0.309 3.691 5 N -0.539 5.539 6 C 0.392 3.608 7 C -0.350 4.350 8 H 0.108 0.892 9 C 0.077 3.923 10 N -0.739 5.739 11 Si 0.930 3.070 12 H -0.259 1.259 13 H -0.270 1.270 14 H -0.249 1.249 15 N -0.641 5.641 16 C 0.443 3.557 17 N -0.498 5.498 18 C 0.130 3.870 19 C -0.231 4.231 20 C -0.055 4.055 21 C 0.028 3.972 22 N -0.648 5.648 23 C 0.501 3.499 24 O -0.505 6.505 25 C -0.063 4.063 26 Cl -0.132 7.132 27 H 0.297 0.703 28 H 0.397 0.603 29 H 0.149 0.851 30 H 0.125 0.875 31 H 0.154 0.846 32 H 0.410 0.590 33 H 0.124 0.876 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.243 2.537 6.244 13.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.217 5.217 2 C 0.019 3.981 3 C -0.332 4.332 4 C 0.003 3.997 5 N -0.221 5.221 6 C 0.288 3.712 7 C -0.378 4.378 8 H 0.126 0.874 9 C -0.152 4.152 10 N -0.359 5.359 11 Si 0.752 3.248 12 H -0.183 1.183 13 H -0.194 1.194 14 H -0.172 1.172 15 N -0.266 5.266 16 C 0.205 3.795 17 N -0.214 5.214 18 C -0.029 4.029 19 C -0.255 4.255 20 C -0.082 4.082 21 C -0.072 4.072 22 N -0.294 5.294 23 C 0.286 3.714 24 O -0.380 6.380 25 C -0.129 4.129 26 Cl -0.106 7.106 27 H 0.109 0.891 28 H 0.234 0.766 29 H 0.166 0.834 30 H 0.143 0.857 31 H 0.171 0.829 32 H 0.246 0.754 33 H 0.142 0.858 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.074 2.286 4.727 11.360 hybrid contribution 0.943 -0.144 1.339 1.645 sum 11.017 2.142 6.067 12.758 Atomic orbital electron populations 1.81056 1.12240 1.15808 1.12583 1.24660 0.91285 0.90822 0.91344 1.12945 0.83115 1.27061 1.10054 1.25259 0.92450 0.90901 0.91131 1.81086 1.10060 1.17082 1.13897 1.16622 0.79786 0.87677 0.87164 1.20197 0.99365 1.24035 0.94235 0.87369 1.26491 0.94831 0.92120 1.01768 1.69479 1.10621 1.28740 1.27027 0.85856 0.80349 0.80045 0.78515 1.18347 1.19433 1.17197 1.41180 1.05159 1.04231 1.76019 1.17663 0.85232 0.86573 0.90032 1.67332 1.38293 0.97654 1.18113 1.22366 0.92671 0.93902 0.93918 1.21673 0.94616 0.99041 1.10121 1.21655 1.01745 0.89649 0.95196 1.17946 0.89010 0.87189 1.13081 1.43037 1.12241 1.16438 1.57661 1.20413 0.82138 0.90195 0.78610 1.90693 1.69833 1.34490 1.42985 1.24164 0.86207 0.98195 1.04334 1.98743 1.26930 1.97350 1.87544 0.89104 0.76578 0.83378 0.85719 0.82908 0.75387 0.85756 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.62 18.54 41.84 0.78 -11.85 16 2 C 0.33 7.41 13.95 -22.47 -0.31 7.10 16 3 C -0.31 -6.69 5.88 -104.94 -0.62 -7.31 16 4 C 0.31 6.77 14.80 -22.46 -0.33 6.44 16 5 N -0.54 -12.20 18.54 41.85 0.78 -11.42 16 6 C 0.39 7.84 5.49 -83.54 -0.46 7.38 16 7 C -0.35 -6.99 7.70 -38.32 -0.30 -7.28 16 8 H 0.11 2.26 7.08 -52.49 -0.37 1.89 16 9 C 0.08 1.39 5.33 -17.20 -0.09 1.30 16 10 N -0.74 -12.71 10.57 55.60 0.59 -12.12 16 11 Si 0.93 14.57 29.57 -169.99 -5.03 9.55 16 12 H -0.26 -4.07 7.11 56.52 0.40 -3.67 16 13 H -0.27 -4.17 7.11 56.52 0.40 -3.77 16 14 H -0.25 -4.08 7.11 56.52 0.40 -3.68 16 15 N -0.64 -11.41 3.30 -9.58 -0.03 -11.44 16 16 C 0.44 7.89 5.69 -154.61 -0.88 7.01 16 17 N -0.50 -9.27 8.99 -12.23 -0.11 -9.38 16 18 C 0.13 2.04 11.17 -17.55 -0.20 1.85 16 19 C -0.23 -3.37 10.10 -39.44 -0.40 -3.77 16 20 C -0.06 -0.87 8.91 -39.14 -0.35 -1.21 16 21 C 0.03 0.44 6.50 -83.29 -0.54 -0.10 16 22 N -0.65 -8.27 5.17 -9.62 -0.05 -8.32 16 23 C 0.50 6.26 7.77 -10.99 -0.09 6.17 16 24 O -0.51 -7.97 12.97 5.54 0.07 -7.90 16 25 C -0.06 -0.54 7.14 36.00 0.26 -0.28 16 26 Cl -0.13 -1.46 28.37 -51.86 -1.47 -2.93 16 27 H 0.30 4.70 8.29 -40.82 -0.34 4.36 16 28 H 0.40 6.34 7.26 -40.82 -0.30 6.05 16 29 H 0.15 1.91 8.06 -52.49 -0.42 1.48 16 30 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.15 2.41 5.59 -52.48 -0.29 2.12 16 32 H 0.41 4.35 7.42 -40.82 -0.30 4.04 16 33 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -27.09 335.81 -5.81 -32.89 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -2.09 Total: 10.57 kcal Atomic # 6 Polarization: 21.58 SS G_CDS: -4.30 Total: 17.28 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: 1.95 Total: -64.53 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.07 Total: -7.90 kcal Atomic # 14 Polarization: 14.57 SS G_CDS: -5.03 Total: 9.55 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -1.47 Total: -2.93 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.09 -5.81 -32.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.376 kcal (2) G-P(sol) polarization free energy of solvation -27.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds