Wall clock time and date at job start Tue Mar 31 2020 16:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43193 * 120.00493 * 52.40372 * 3 2 1 5 5 N 3.51039 * 140.68868 * 52.40014 * 2 1 3 6 6 C 1.41155 * 119.99656 * 232.40024 * 3 2 1 7 7 C 1.38988 * 120.00109 * 5.01980 * 6 3 2 8 8 H 1.07997 * 120.00007 * 334.97535 * 7 6 3 9 9 C 1.40836 * 120.00213 * 154.97708 * 7 6 3 10 10 N 1.30336 * 119.99966 * 4.74385 * 9 7 6 11 11 Si 1.86804 * 120.00184 * 184.74932 * 9 7 6 12 12 H 1.48496 * 109.46923 * 89.99952 * 11 9 7 13 13 H 1.48503 * 109.47040 * 209.99982 * 11 9 7 14 14 H 1.48497 * 109.47124 * 329.99810 * 11 9 7 15 15 N 1.38335 * 120.00029 * 185.02179 * 6 3 2 16 16 C 1.39290 * 120.00058 * 120.15692 * 15 6 3 17 17 N 1.32305 * 119.74805 * 354.89262 * 16 15 6 18 18 C 1.31970 * 121.70141 * 179.97438 * 17 16 15 19 19 C 1.38087 * 120.99318 * 0.02562 * 18 17 16 20 20 C 1.38767 * 119.38176 * 0.25026 * 19 18 17 21 21 C 1.38909 * 118.44189 * 359.51130 * 20 19 18 22 22 N 1.40097 * 120.51522 * 180.21834 * 21 20 19 23 23 C 1.34775 * 120.00135 * 334.92909 * 22 21 20 24 24 O 1.21296 * 119.99602 * 4.19967 * 23 22 21 25 25 C 1.50693 * 120.00351 * 184.19791 * 23 22 21 26 26 Cl 1.80295 * 109.47611 * 180.02562 * 25 23 22 27 27 H 0.96999 * 120.00400 * 184.99823 * 10 9 7 28 28 H 0.96998 * 120.00313 * 300.15589 * 15 6 3 29 29 H 1.08002 * 119.50628 * 180.02562 * 18 17 16 30 30 H 1.08001 * 120.30664 * 179.97438 * 19 18 17 31 31 H 1.08008 * 120.77815 * 179.72482 * 20 19 18 32 32 H 0.97003 * 119.99933 * 154.92507 * 22 21 20 33 33 H 1.09000 * 109.47003 * 300.00032 * 25 23 22 34 34 H 1.08998 * 109.47423 * 59.99639 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2844 -0.7556 -0.9825 5 7 3.8520 -1.3569 -1.7620 6 6 3.2734 0.7468 0.9686 7 6 2.5821 1.3961 1.9846 8 1 1.5510 1.6823 1.8389 9 6 3.2262 1.6807 3.2043 10 7 4.4950 1.4193 3.3477 11 14 2.2620 2.4326 4.6166 12 1 1.6900 1.3502 5.4570 13 1 3.1665 3.2738 5.4410 14 1 1.1632 3.2715 4.0745 15 7 4.6527 0.8320 0.9065 16 6 5.2685 2.0743 0.7733 17 7 4.5295 3.1586 0.6049 18 6 5.0722 4.3545 0.4751 19 6 6.4426 4.5210 0.5099 20 6 7.2591 3.4118 0.6788 21 6 6.6616 2.1655 0.8181 22 7 7.4443 1.0172 0.9955 23 6 8.7149 0.9917 0.5465 24 8 9.2054 1.9875 0.0576 25 6 9.5261 -0.2738 0.6521 26 17 11.1719 0.0087 -0.0277 27 1 4.9223 1.5472 4.2091 28 1 5.1911 0.0267 0.9557 29 1 4.4351 5.2160 0.3396 30 1 6.8750 5.5048 0.4021 31 1 8.3339 3.5155 0.7049 32 1 7.0719 0.2405 1.4415 33 1 9.6109 -0.5648 1.6991 34 1 9.0332 -1.0691 0.0929 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158214641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:54 Heat of formation + Delta-G solvation = 53.704354 kcal Electronic energy + Delta-G solvation = -25030.448433 eV Core-core repulsion = 21182.282179 eV Total energy + Delta-G solvation = -3848.166255 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.87783 -40.27081 -38.65286 -37.02121 -36.92395 -36.49277 -36.09913 -34.95344 -32.82797 -32.31049 -30.42070 -28.91286 -28.69022 -24.93477 -23.86810 -22.68985 -21.65962 -20.62937 -19.56457 -18.89403 -18.19392 -17.99162 -17.64986 -17.07463 -16.76796 -15.99738 -15.65375 -15.42289 -15.15589 -14.90996 -14.59787 -14.50298 -14.33050 -14.16109 -13.91672 -13.83357 -13.40105 -13.37109 -13.30931 -13.09556 -12.94771 -12.65071 -12.63261 -12.07671 -11.90530 -11.85914 -11.50278 -11.46424 -11.39343 -11.09016 -10.15992 -9.92681 -9.54047 -9.08192 -8.15041 -7.02629 0.31608 0.50321 0.95761 0.96896 1.40787 1.49111 1.51813 1.57130 2.04570 2.08174 2.12492 2.26056 2.29436 2.63027 2.76493 3.21070 3.43902 3.48495 3.82717 3.97486 4.06808 4.14619 4.19236 4.40813 4.44521 4.64488 4.74505 4.77743 5.07181 5.34211 5.46474 5.49614 5.68041 5.96613 6.11800 6.26984 6.31612 6.63864 6.80172 6.99458 7.23201 7.38195 7.56086 7.79471 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011301 B = 0.004398 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.163591 B = 6365.149328 C = 7392.899247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C 0.330 3.670 3 C -0.330 4.330 4 C 0.316 3.684 5 N -0.559 5.559 6 C 0.387 3.613 7 C -0.350 4.350 8 H 0.094 0.906 9 C 0.055 3.945 10 N -0.726 5.726 11 Si 0.980 3.020 12 H -0.257 1.257 13 H -0.260 1.260 14 H -0.263 1.263 15 N -0.639 5.639 16 C 0.422 3.578 17 N -0.529 5.529 18 C 0.116 3.884 19 C -0.219 4.219 20 C -0.068 4.068 21 C 0.029 3.971 22 N -0.643 5.643 23 C 0.499 3.501 24 O -0.540 6.540 25 C -0.054 4.054 26 Cl -0.154 7.154 27 H 0.309 0.691 28 H 0.404 0.596 29 H 0.173 0.827 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.420 0.580 33 H 0.161 0.839 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.491 2.941 7.809 15.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.246 5.246 2 C 0.024 3.976 3 C -0.349 4.349 4 C 0.011 3.989 5 N -0.242 5.242 6 C 0.282 3.718 7 C -0.378 4.378 8 H 0.112 0.888 9 C -0.175 4.175 10 N -0.345 5.345 11 Si 0.800 3.200 12 H -0.181 1.181 13 H -0.184 1.184 14 H -0.187 1.187 15 N -0.265 5.265 16 C 0.185 3.815 17 N -0.245 5.245 18 C -0.042 4.042 19 C -0.241 4.241 20 C -0.096 4.096 21 C -0.071 4.071 22 N -0.289 5.289 23 C 0.286 3.714 24 O -0.417 6.417 25 C -0.119 4.119 26 Cl -0.127 7.127 27 H 0.121 0.879 28 H 0.242 0.758 29 H 0.190 0.810 30 H 0.171 0.829 31 H 0.171 0.829 32 H 0.258 0.742 33 H 0.179 0.821 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.363 2.670 6.294 13.261 hybrid contribution 0.646 -0.146 0.942 1.151 sum 12.009 2.524 7.235 14.245 Atomic orbital electron populations 1.81032 1.12862 1.17084 1.13598 1.24915 0.91597 0.90314 0.90805 1.13040 0.82560 1.28326 1.11010 1.25307 0.92132 0.90574 0.90881 1.81072 1.10626 1.17999 1.14531 1.16549 0.80883 0.87595 0.86742 1.20274 0.98881 1.23589 0.95038 0.88847 1.26889 0.95635 0.92639 1.02358 1.69439 1.10610 1.26502 1.27940 0.85133 0.79080 0.79262 0.76496 1.18108 1.18422 1.18675 1.41027 1.04236 1.04717 1.76495 1.17789 0.85912 0.86385 0.91415 1.67282 1.39654 0.98732 1.18872 1.22810 0.93649 0.93787 0.93959 1.21992 0.94161 1.00088 1.07900 1.21826 1.01922 0.90066 0.95740 1.18005 0.88690 0.88330 1.12083 1.43037 1.12238 1.15968 1.57664 1.21077 0.81862 0.91039 0.77380 1.90678 1.70468 1.36154 1.44415 1.24368 0.84366 0.96319 1.06875 1.98748 1.28545 1.97416 1.87986 0.87893 0.75833 0.81042 0.82855 0.82931 0.74158 0.82113 0.83192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -26.94 18.54 19.00 0.35 -26.59 16 2 C 0.33 15.18 13.95 88.33 1.23 16.42 16 3 C -0.33 -14.22 5.88 -20.07 -0.12 -14.34 16 4 C 0.32 13.91 14.80 88.33 1.31 15.22 16 5 N -0.56 -25.27 18.54 19.01 0.35 -24.92 16 6 C 0.39 15.42 5.49 39.01 0.21 15.63 16 7 C -0.35 -13.83 7.70 23.09 0.18 -13.66 16 8 H 0.09 3.94 7.08 -2.91 -0.02 3.92 16 9 C 0.05 1.89 5.33 85.55 0.46 2.34 16 10 N -0.73 -23.47 10.57 21.98 0.23 -23.23 16 11 Si 0.98 28.34 29.57 68.60 2.03 30.37 16 12 H -0.26 -7.34 7.11 99.48 0.71 -6.64 16 13 H -0.26 -7.12 7.11 99.48 0.71 -6.41 16 14 H -0.26 -8.19 7.11 99.48 0.71 -7.48 16 15 N -0.64 -22.24 3.30 -184.24 -0.61 -22.85 16 16 C 0.42 14.63 5.69 133.13 0.76 15.39 16 17 N -0.53 -19.24 8.99 -192.61 -1.73 -20.97 16 18 C 0.12 3.45 11.17 84.64 0.95 4.40 16 19 C -0.22 -5.93 10.10 22.36 0.23 -5.70 16 20 C -0.07 -2.04 8.91 22.56 0.20 -1.84 16 21 C 0.03 0.90 6.50 38.33 0.25 1.15 16 22 N -0.64 -15.25 5.17 -302.73 -1.57 -16.81 16 23 C 0.50 11.53 7.77 87.66 0.68 12.21 16 24 O -0.54 -16.42 12.97 -3.08 -0.04 -16.46 16 25 C -0.05 -0.78 7.14 71.23 0.51 -0.27 16 26 Cl -0.15 -3.14 28.37 -2.72 -0.08 -3.21 16 27 H 0.31 8.91 8.29 -92.71 -0.77 8.14 16 28 H 0.40 12.51 7.26 -92.71 -0.67 11.84 16 29 H 0.17 4.09 8.06 -2.91 -0.02 4.06 16 30 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 31 H 0.15 4.63 5.59 -2.91 -0.02 4.61 16 32 H 0.42 8.02 7.42 -92.71 -0.69 7.33 16 33 H 0.16 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -58.19 335.81 5.65 -52.54 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -0.13 Total: 25.18 kcal Atomic # 6 Polarization: 40.11 SS G_CDS: 6.84 Total: 46.95 kcal Atomic # 7 Polarization: -132.40 SS G_CDS: -2.97 Total: -135.37 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.04 Total: -16.46 kcal Atomic # 14 Polarization: 28.34 SS G_CDS: 2.03 Total: 30.37 kcal Atomic # 17 Polarization: -3.14 SS G_CDS: -0.08 Total: -3.21 kcal Total: -58.19 5.65 -52.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.239 kcal (2) G-P(sol) polarization free energy of solvation -58.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds