Wall clock time and date at job start Tue Mar 31 2020 16:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.43201 * 119.99669 * 144.26313 * 3 2 1 5 5 N 3.51033 * 140.68946 * 144.26020 * 2 1 3 6 6 C 1.41150 * 120.00072 * 323.98380 * 3 2 1 7 7 C 1.38987 * 119.99954 * 354.95712 * 6 3 2 8 8 H 1.08002 * 120.00067 * 33.16162 * 7 6 3 9 9 C 1.40841 * 120.00217 * 213.15426 * 7 6 3 10 10 N 1.30337 * 119.99547 * 5.34449 * 9 7 6 11 11 Si 1.86795 * 120.00234 * 185.34530 * 9 7 6 12 12 H 1.48500 * 109.47296 * 89.99902 * 11 9 7 13 13 H 1.48503 * 109.47195 * 210.00401 * 11 9 7 14 14 H 1.48500 * 109.47099 * 329.99744 * 11 9 7 15 15 N 1.38349 * 120.00030 * 174.95821 * 6 3 2 16 16 C 1.39322 * 120.00082 * 240.50231 * 15 6 3 17 17 C 1.39100 * 119.62674 * 356.16490 * 16 15 6 18 18 C 1.38264 * 119.17093 * 179.97438 * 17 16 15 19 19 C 1.39412 * 118.44272 * 359.97438 * 18 17 16 20 20 N 1.40140 * 120.40880 * 179.97438 * 19 18 17 21 21 C 1.34776 * 119.99687 * 34.12728 * 20 19 18 22 22 O 1.21290 * 120.00259 * 5.94120 * 21 20 19 23 23 C 1.50702 * 119.99803 * 185.93854 * 21 20 19 24 24 Cl 1.80304 * 109.47058 * 179.97438 * 23 21 20 25 25 C 1.38668 * 119.18616 * 359.97438 * 19 18 17 26 26 N 1.31929 * 120.75504 * 359.72719 * 25 19 18 27 27 H 0.97001 * 119.99571 * 184.99951 * 10 9 7 28 28 H 0.97000 * 119.99497 * 60.50478 * 15 6 3 29 29 H 1.08001 * 120.41947 * 359.97438 * 17 16 15 30 30 H 1.07996 * 120.77985 * 180.02562 * 18 17 16 31 31 H 0.97000 * 120.00197 * 214.12482 * 20 19 18 32 32 H 1.08996 * 109.47452 * 299.99871 * 23 21 20 33 33 H 1.09006 * 109.46710 * 60.00167 * 23 21 20 34 34 H 1.08004 * 119.62475 * 179.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2835 1.0076 -0.7244 5 7 3.8521 1.8051 -1.2990 6 6 3.2742 -0.9878 0.7188 7 6 2.5837 -1.8976 1.5108 8 1 1.5997 -2.2317 1.2167 9 6 3.1673 -2.3839 2.6968 10 7 4.3078 -1.9040 3.1062 11 14 2.3067 -3.7166 3.6829 12 1 2.7552 -5.0506 3.2092 13 1 2.6429 -3.5632 5.1213 14 1 0.8377 -3.5953 3.5024 15 7 4.6537 -1.0509 0.6350 16 6 5.2699 -2.1999 0.1439 17 6 4.4962 -3.3082 -0.1847 18 6 5.1175 -4.4433 -0.6718 19 6 6.5041 -4.4315 -0.8156 20 7 7.1761 -5.5597 -1.3049 21 6 6.5916 -6.3420 -2.2338 22 8 5.5327 -6.0125 -2.7249 23 6 7.2537 -7.6263 -2.6621 24 17 6.2349 -8.4419 -3.9062 25 6 7.2102 -3.2897 -0.4685 26 7 6.5841 -2.2219 -0.0122 27 1 4.7452 -2.2882 3.8820 28 1 5.1919 -0.2952 0.9182 29 1 3.4236 -3.2824 -0.0610 30 1 4.5420 -5.3183 -0.9354 31 1 8.0620 -5.7775 -0.9752 32 1 8.2349 -7.4065 -3.0827 33 1 7.3670 -8.2821 -1.7988 34 1 8.2847 -3.2729 -0.5767 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158218099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:39 Heat of formation + Delta-G solvation = 61.918024 kcal Electronic energy + Delta-G solvation = -24341.778156 eV Core-core repulsion = 20493.968072 eV Total energy + Delta-G solvation = -3847.810083 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.63201 -39.32925 -37.36016 -36.30456 -35.44175 -34.86605 -34.73946 -33.45899 -31.82122 -30.89837 -29.80145 -27.48479 -27.21663 -23.42280 -23.05103 -21.34937 -20.62802 -19.12696 -18.12314 -17.43277 -17.20789 -16.89137 -16.33309 -15.99528 -15.80460 -14.72519 -14.61445 -14.14042 -13.95700 -13.88750 -13.56279 -13.31121 -12.87743 -12.69571 -12.64109 -12.32165 -12.27973 -11.79039 -11.72544 -11.68687 -11.60064 -11.18077 -11.11614 -11.00520 -10.98101 -10.83551 -10.60260 -10.24157 -10.04595 -9.53535 -9.25326 -8.95820 -8.12251 -7.70407 -6.80265 -5.47574 1.46724 1.65113 1.77206 2.08027 2.45564 2.69778 2.74077 2.82092 2.90852 3.39109 3.66660 3.82411 4.01399 4.17743 4.23750 4.29665 4.38606 4.52347 4.60839 4.98115 5.09359 5.26437 5.41336 5.52552 5.59929 5.96505 6.19744 6.22825 6.29291 6.38968 6.65984 6.89318 7.03828 7.19165 7.25420 7.59716 7.71667 7.90570 8.04825 8.22401 8.72098 8.89599 9.05588 9.23649 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.003525 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.363432 B = 7941.798629 C = 8601.293945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C 0.325 3.675 3 C -0.293 4.293 4 C 0.307 3.693 5 N -0.523 5.523 6 C 0.398 3.602 7 C -0.402 4.402 8 H 0.112 0.888 9 C 0.077 3.923 10 N -0.729 5.729 11 Si 0.920 3.080 12 H -0.256 1.256 13 H -0.268 1.268 14 H -0.248 1.248 15 N -0.640 5.640 16 C 0.429 3.571 17 C -0.202 4.202 18 C -0.038 4.038 19 C 0.008 3.992 20 N -0.657 5.657 21 C 0.496 3.504 22 O -0.497 6.497 23 C -0.062 4.062 24 Cl -0.131 7.131 25 C 0.129 3.871 26 N -0.529 5.529 27 H 0.302 0.698 28 H 0.406 0.594 29 H 0.153 0.847 30 H 0.136 0.864 31 H 0.407 0.593 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.122 -16.161 0.262 20.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.206 5.206 2 C 0.016 3.984 3 C -0.311 4.311 4 C -0.001 4.001 5 N -0.205 5.205 6 C 0.293 3.707 7 C -0.430 4.430 8 H 0.130 0.870 9 C -0.153 4.153 10 N -0.348 5.348 11 Si 0.741 3.259 12 H -0.181 1.181 13 H -0.192 1.192 14 H -0.171 1.171 15 N -0.263 5.263 16 C 0.193 3.807 17 C -0.227 4.227 18 C -0.065 4.065 19 C -0.089 4.089 20 N -0.304 5.304 21 C 0.280 3.720 22 O -0.370 6.370 23 C -0.129 4.129 24 Cl -0.104 7.104 25 C -0.031 4.031 26 N -0.246 5.246 27 H 0.114 0.886 28 H 0.243 0.757 29 H 0.171 0.829 30 H 0.154 0.846 31 H 0.242 0.758 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.879 -13.988 -0.658 17.732 hybrid contribution 0.376 -1.479 0.864 1.754 sum 11.255 -15.467 0.206 19.129 Atomic orbital electron populations 1.81069 1.12132 1.12311 1.15055 1.24611 0.91226 0.91570 0.90944 1.13116 0.83224 1.07301 1.27428 1.25157 0.92559 0.91627 0.90792 1.81055 1.09607 1.13906 1.15941 1.16742 0.79576 0.88858 0.85527 1.20147 1.03006 1.19128 1.00726 0.87025 1.26345 0.94751 0.96504 0.97658 1.69433 1.12859 1.31776 1.20776 0.86002 0.81576 0.79715 0.78558 1.18074 1.19215 1.17115 1.41348 1.04830 1.15050 1.65034 1.18025 0.87582 0.86225 0.88825 1.21800 1.02837 0.92585 1.05476 1.21217 0.92602 0.98619 0.94058 1.18328 0.92931 0.88957 1.08687 1.43056 1.20619 1.25798 1.40958 1.20460 0.86508 0.85428 0.79559 1.90839 1.21619 1.71740 1.52803 1.24140 0.97522 0.94912 0.96304 1.98757 1.73115 1.80193 1.58327 1.21971 0.99139 0.86013 0.96011 1.67038 1.09057 1.27971 1.20560 0.88649 0.75653 0.82949 0.84631 0.75780 0.85942 0.85840 0.83401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -12.28 18.54 41.84 0.78 -11.51 16 2 C 0.33 7.33 14.05 -22.47 -0.32 7.02 16 3 C -0.29 -6.33 5.88 -104.94 -0.62 -6.95 16 4 C 0.31 6.94 14.81 -22.49 -0.33 6.61 16 5 N -0.52 -12.38 18.53 41.82 0.78 -11.60 16 6 C 0.40 8.11 5.04 -83.54 -0.42 7.69 16 7 C -0.40 -7.93 5.95 -38.32 -0.23 -8.15 16 8 H 0.11 2.21 7.29 -52.49 -0.38 1.82 16 9 C 0.08 1.43 5.13 -17.20 -0.09 1.34 16 10 N -0.73 -13.77 11.90 55.60 0.66 -13.11 16 11 Si 0.92 14.51 29.57 -169.99 -5.03 9.48 16 12 H -0.26 -4.00 7.11 56.52 0.40 -3.60 16 13 H -0.27 -4.18 7.11 56.52 0.40 -3.78 16 14 H -0.25 -4.05 7.11 56.52 0.40 -3.65 16 15 N -0.64 -12.50 3.32 -9.71 -0.03 -12.54 16 16 C 0.43 8.05 7.17 -154.76 -1.11 6.94 16 17 C -0.20 -3.63 8.79 -39.25 -0.34 -3.97 16 18 C -0.04 -0.61 8.76 -39.13 -0.34 -0.95 16 19 C 0.01 0.11 6.28 -83.46 -0.52 -0.41 16 20 N -0.66 -6.16 5.36 -9.73 -0.05 -6.21 16 21 C 0.50 5.23 7.62 -10.98 -0.08 5.14 16 22 O -0.50 -7.69 13.83 5.55 0.08 -7.62 16 23 C -0.06 -0.39 7.14 36.01 0.26 -0.13 16 24 Cl -0.13 -1.28 28.37 -51.86 -1.47 -2.75 16 25 C 0.13 1.82 11.11 -17.35 -0.19 1.63 16 26 N -0.53 -9.31 10.38 -12.22 -0.13 -9.43 16 27 H 0.30 5.21 8.29 -40.82 -0.34 4.87 16 28 H 0.41 8.01 8.93 -40.82 -0.36 7.65 16 29 H 0.15 2.80 5.64 -52.49 -0.30 2.51 16 30 H 0.14 2.16 6.60 -52.49 -0.35 1.81 16 31 H 0.41 2.05 8.83 -40.82 -0.36 1.69 16 32 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.15 1.54 8.06 -52.48 -0.42 1.11 16 LS Contribution 338.78 15.07 5.11 5.11 Total: -1.00 -28.18 338.78 -5.81 -33.99 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -2.15 Total: 10.39 kcal Atomic # 6 Polarization: 20.14 SS G_CDS: -4.34 Total: 15.79 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: 2.00 Total: -64.40 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.08 Total: -7.62 kcal Atomic # 14 Polarization: 14.51 SS G_CDS: -5.03 Total: 9.48 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.47 Total: -2.75 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.18 -5.81 -33.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158218099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.908 kcal (2) G-P(sol) polarization free energy of solvation -28.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds