Wall clock time and date at job start Tue Mar 31 2020 16:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.43201 * 119.99669 * 144.26313 * 3 2 1 5 5 N 3.51033 * 140.68946 * 144.26020 * 2 1 3 6 6 C 1.41150 * 120.00072 * 323.98380 * 3 2 1 7 7 C 1.38987 * 119.99954 * 354.95712 * 6 3 2 8 8 H 1.08002 * 120.00067 * 33.16162 * 7 6 3 9 9 C 1.40841 * 120.00217 * 213.15426 * 7 6 3 10 10 N 1.30337 * 119.99547 * 5.34449 * 9 7 6 11 11 Si 1.86795 * 120.00234 * 185.34530 * 9 7 6 12 12 H 1.48500 * 109.47296 * 89.99902 * 11 9 7 13 13 H 1.48503 * 109.47195 * 210.00401 * 11 9 7 14 14 H 1.48500 * 109.47099 * 329.99744 * 11 9 7 15 15 N 1.38349 * 120.00030 * 174.95821 * 6 3 2 16 16 C 1.39322 * 120.00082 * 240.50231 * 15 6 3 17 17 C 1.39100 * 119.62674 * 356.16490 * 16 15 6 18 18 C 1.38264 * 119.17093 * 179.97438 * 17 16 15 19 19 C 1.39412 * 118.44272 * 359.97438 * 18 17 16 20 20 N 1.40140 * 120.40880 * 179.97438 * 19 18 17 21 21 C 1.34776 * 119.99687 * 34.12728 * 20 19 18 22 22 O 1.21290 * 120.00259 * 5.94120 * 21 20 19 23 23 C 1.50702 * 119.99803 * 185.93854 * 21 20 19 24 24 Cl 1.80304 * 109.47058 * 179.97438 * 23 21 20 25 25 C 1.38668 * 119.18616 * 359.97438 * 19 18 17 26 26 N 1.31929 * 120.75504 * 359.72719 * 25 19 18 27 27 H 0.97001 * 119.99571 * 184.99951 * 10 9 7 28 28 H 0.97000 * 119.99497 * 60.50478 * 15 6 3 29 29 H 1.08001 * 120.41947 * 359.97438 * 17 16 15 30 30 H 1.07996 * 120.77985 * 180.02562 * 18 17 16 31 31 H 0.97000 * 120.00197 * 214.12482 * 20 19 18 32 32 H 1.08996 * 109.47452 * 299.99871 * 23 21 20 33 33 H 1.09006 * 109.46710 * 60.00167 * 23 21 20 34 34 H 1.08004 * 119.62475 * 179.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2835 1.0076 -0.7244 5 7 3.8521 1.8051 -1.2990 6 6 3.2742 -0.9878 0.7188 7 6 2.5837 -1.8976 1.5108 8 1 1.5997 -2.2317 1.2167 9 6 3.1673 -2.3839 2.6968 10 7 4.3078 -1.9040 3.1062 11 14 2.3067 -3.7166 3.6829 12 1 2.7552 -5.0506 3.2092 13 1 2.6429 -3.5632 5.1213 14 1 0.8377 -3.5953 3.5024 15 7 4.6537 -1.0509 0.6350 16 6 5.2699 -2.1999 0.1439 17 6 4.4962 -3.3082 -0.1847 18 6 5.1175 -4.4433 -0.6718 19 6 6.5041 -4.4315 -0.8156 20 7 7.1761 -5.5597 -1.3049 21 6 6.5916 -6.3420 -2.2338 22 8 5.5327 -6.0125 -2.7249 23 6 7.2537 -7.6263 -2.6621 24 17 6.2349 -8.4419 -3.9062 25 6 7.2102 -3.2897 -0.4685 26 7 6.5841 -2.2219 -0.0122 27 1 4.7452 -2.2882 3.8820 28 1 5.1919 -0.2952 0.9182 29 1 3.4236 -3.2824 -0.0610 30 1 4.5420 -5.3183 -0.9354 31 1 8.0620 -5.7775 -0.9752 32 1 8.2349 -7.4065 -3.0827 33 1 7.3670 -8.2821 -1.7988 34 1 8.2847 -3.2729 -0.5767 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158218099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:38 Heat of formation + Delta-G solvation = 44.929671 kcal Electronic energy + Delta-G solvation = -24342.514826 eV Core-core repulsion = 20493.968072 eV Total energy + Delta-G solvation = -3848.546754 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.73465 -40.47968 -38.80838 -37.12171 -36.90531 -36.59212 -35.98718 -34.89193 -33.04790 -32.32782 -30.74937 -28.83714 -28.55604 -24.67071 -24.32990 -22.77508 -21.60353 -20.73485 -19.19127 -19.00442 -18.30258 -17.98902 -17.80193 -17.29527 -16.66948 -16.06802 -15.55009 -15.41196 -15.17218 -14.89538 -14.59328 -14.50484 -14.39207 -14.24140 -13.91727 -13.85958 -13.58284 -13.44489 -13.36322 -13.31122 -13.04907 -12.78285 -12.74146 -12.21749 -11.94441 -11.85838 -11.46846 -11.45064 -11.16294 -10.87110 -10.51366 -10.21603 -9.63254 -9.13168 -8.16708 -7.11791 0.20736 0.49479 0.66635 1.06362 1.37884 1.47943 1.52678 1.57709 1.99157 2.07502 2.09619 2.19268 2.24955 2.54823 2.69761 3.07857 3.35713 3.54219 3.76640 3.86332 4.04065 4.15072 4.19760 4.26012 4.37094 4.54767 4.73232 4.91744 4.99620 5.11819 5.39974 5.42673 5.58662 5.88023 6.02384 6.19052 6.40595 6.57550 6.76109 7.10912 7.14014 7.26904 7.39032 7.78252 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.003525 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.363432 B = 7941.798629 C = 8601.293945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C 0.331 3.669 3 C -0.313 4.313 4 C 0.314 3.686 5 N -0.550 5.550 6 C 0.395 3.605 7 C -0.395 4.395 8 H 0.108 0.892 9 C 0.054 3.946 10 N -0.735 5.735 11 Si 0.974 3.026 12 H -0.250 1.250 13 H -0.259 1.259 14 H -0.258 1.258 15 N -0.644 5.644 16 C 0.408 3.592 17 C -0.219 4.219 18 C -0.045 4.045 19 C 0.025 3.975 20 N -0.640 5.640 21 C 0.493 3.507 22 O -0.551 6.551 23 C -0.050 4.050 24 Cl -0.164 7.164 25 C 0.130 3.870 26 N -0.546 5.546 27 H 0.312 0.688 28 H 0.401 0.599 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.432 0.568 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.645 -18.734 1.233 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.231 5.231 2 C 0.024 3.976 3 C -0.331 4.331 4 C 0.008 3.992 5 N -0.233 5.233 6 C 0.290 3.710 7 C -0.422 4.422 8 H 0.126 0.874 9 C -0.176 4.176 10 N -0.353 5.353 11 Si 0.793 3.207 12 H -0.174 1.174 13 H -0.182 1.182 14 H -0.181 1.181 15 N -0.268 5.268 16 C 0.174 3.826 17 C -0.244 4.244 18 C -0.073 4.073 19 C -0.074 4.074 20 N -0.289 5.289 21 C 0.280 3.720 22 O -0.428 6.428 23 C -0.115 4.115 24 Cl -0.138 7.138 25 C -0.030 4.030 26 N -0.262 5.262 27 H 0.124 0.876 28 H 0.238 0.762 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.273 0.727 32 H 0.180 0.820 33 H 0.179 0.821 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 13.478 -16.588 0.315 21.376 hybrid contribution -0.228 -0.841 0.624 1.072 sum 13.251 -17.429 0.939 21.915 Atomic orbital electron populations 1.81049 1.12587 1.13224 1.16223 1.24754 0.91376 0.91060 0.90449 1.13181 0.82833 1.08204 1.28918 1.25296 0.92157 0.91371 0.90390 1.81031 1.10302 1.14813 1.17180 1.16726 0.80222 0.88707 0.85365 1.20333 1.02686 1.18407 1.00804 0.87444 1.26904 0.95162 0.97772 0.97717 1.69431 1.13135 1.31802 1.20981 0.85219 0.79965 0.77775 0.77737 1.17397 1.18237 1.18114 1.41242 1.04242 1.15427 1.65855 1.18102 0.88266 0.86125 0.90127 1.21713 1.02315 0.93393 1.07024 1.21294 0.94031 0.97930 0.94013 1.18351 0.92175 0.90196 1.06643 1.42952 1.21405 1.24179 1.40379 1.21267 0.85791 0.86318 0.78621 1.90838 1.24161 1.73087 1.54699 1.24418 0.97418 0.92730 0.96907 1.98764 1.74421 1.80654 1.59948 1.22656 1.00929 0.84988 0.94448 1.67060 1.08555 1.29631 1.20993 0.87557 0.76230 0.84321 0.84849 0.72737 0.81967 0.82090 0.79131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -26.25 18.54 19.00 0.35 -25.90 16 2 C 0.33 15.35 14.05 88.33 1.24 16.59 16 3 C -0.31 -13.97 5.88 -20.07 -0.12 -14.08 16 4 C 0.31 14.68 14.81 88.34 1.31 15.99 16 5 N -0.55 -26.69 18.53 19.00 0.35 -26.34 16 6 C 0.40 16.50 5.04 39.01 0.20 16.70 16 7 C -0.39 -15.73 5.95 23.09 0.14 -15.59 16 8 H 0.11 4.33 7.29 -2.91 -0.02 4.31 16 9 C 0.05 1.95 5.13 85.55 0.44 2.39 16 10 N -0.73 -27.05 11.90 21.98 0.26 -26.79 16 11 Si 0.97 28.54 29.57 68.60 2.03 30.56 16 12 H -0.25 -7.07 7.11 99.48 0.71 -6.36 16 13 H -0.26 -7.20 7.11 99.48 0.71 -6.49 16 14 H -0.26 -7.94 7.11 99.48 0.71 -7.24 16 15 N -0.64 -25.66 3.32 -184.62 -0.61 -26.27 16 16 C 0.41 15.31 7.17 132.96 0.95 16.27 16 17 C -0.22 -7.96 8.79 22.48 0.20 -7.76 16 18 C -0.05 -1.42 8.76 22.56 0.20 -1.22 16 19 C 0.02 0.61 6.28 38.20 0.24 0.85 16 20 N -0.64 -9.56 5.36 -303.08 -1.62 -11.18 16 21 C 0.49 8.92 7.62 87.66 0.67 9.59 16 22 O -0.55 -16.43 13.83 -3.06 -0.04 -16.48 16 23 C -0.05 -0.41 7.14 71.24 0.51 0.10 16 24 Cl -0.16 -2.91 28.37 -2.72 -0.08 -2.99 16 25 C 0.13 3.30 11.11 84.78 0.94 4.25 16 26 N -0.55 -18.55 10.38 -192.58 -2.00 -20.55 16 27 H 0.31 10.26 8.29 -92.71 -0.77 9.49 16 28 H 0.40 16.23 8.93 -92.71 -0.83 15.40 16 29 H 0.14 5.29 5.64 -2.91 -0.02 5.27 16 30 H 0.13 4.23 6.60 -2.91 -0.02 4.21 16 31 H 0.43 2.10 8.83 -92.71 -0.82 1.29 16 32 H 0.16 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.16 0.21 8.14 -2.38 -0.02 0.19 16 34 H 0.19 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -63.79 338.78 5.14 -58.65 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -0.41 Total: 23.22 kcal Atomic # 6 Polarization: 37.15 SS G_CDS: 6.91 Total: 44.06 kcal Atomic # 7 Polarization: -133.77 SS G_CDS: -3.27 Total: -137.04 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.04 Total: -16.48 kcal Atomic # 14 Polarization: 28.54 SS G_CDS: 2.03 Total: 30.56 kcal Atomic # 17 Polarization: -2.91 SS G_CDS: -0.08 Total: -2.99 kcal Total: -63.79 5.14 -58.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158218099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.582 kcal (2) G-P(sol) polarization free energy of solvation -63.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds