Wall clock time and date at job start Tue Mar 31 2020 17:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47580 * 2 1 4 4 H 1.09002 * 109.47010 * 305.66791 * 3 2 1 5 5 C 1.50699 * 109.47162 * 185.66564 * 3 2 1 6 6 H 1.07998 * 120.00297 * 275.00593 * 5 3 2 7 7 C 1.37878 * 119.99656 * 95.00451 * 5 3 2 8 8 N 1.31515 * 120.00096 * 184.82883 * 7 5 3 9 9 Si 1.86799 * 120.00226 * 4.83037 * 7 5 3 10 10 H 1.48505 * 109.47242 * 84.85788 * 9 7 5 11 11 H 1.48491 * 109.47455 * 204.85888 * 9 7 5 12 12 H 1.48504 * 109.47242 * 324.86455 * 9 7 5 13 13 N 1.46500 * 109.46885 * 65.66918 * 3 2 1 14 14 C 1.38546 * 119.99763 * 274.99908 * 13 3 2 15 15 N 1.33144 * 120.56821 * 0.02562 * 14 13 3 16 16 C 1.31881 * 119.74853 * 179.86876 * 15 14 13 17 17 Cl 1.73596 * 118.76962 * 180.27543 * 16 15 14 18 18 N 1.31376 * 122.46262 * 0.29414 * 16 15 14 19 19 C 1.34062 * 121.81967 * 0.06561 * 18 16 15 20 20 C 1.37937 * 116.80521 * 359.46127 * 19 18 16 21 21 S 1.77337 * 107.96116 * 180.79704 * 20 19 18 22 22 O 1.42103 * 105.50034 * 129.12813 * 21 20 19 23 23 O 1.42097 * 105.49847 * 259.58685 * 21 20 19 24 24 C 1.83586 * 97.18044 * 14.35810 * 21 20 19 25 25 C 1.50703 * 127.29798 * 178.91985 * 19 18 16 26 26 H 1.08997 * 109.47098 * 299.99904 * 1 2 3 27 27 H 1.09000 * 109.47156 * 59.99588 * 1 2 3 28 28 H 1.09000 * 109.47559 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46893 * 239.99581 * 2 1 3 30 30 H 1.09000 * 109.47156 * 120.00412 * 2 1 3 31 31 H 0.96995 * 120.00011 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00436 * 95.00112 * 13 3 2 33 33 H 1.09001 * 111.20436 * 93.97946 * 24 21 20 34 34 H 1.09004 * 111.19632 * 218.33042 * 24 21 20 35 35 H 1.08999 * 109.23668 * 39.64218 * 25 19 18 36 36 H 1.09004 * 109.13609 * 280.30974 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5963 1.9848 -0.8349 5 6 3.5406 1.4446 -0.1403 6 1 4.1648 1.3332 0.7339 7 6 4.1163 1.5889 -1.3847 8 7 5.4212 1.4959 -1.5204 9 14 3.0431 1.9165 -2.8782 10 1 2.7768 3.3735 -2.9863 11 1 3.7419 1.4489 -4.1021 12 1 1.7573 1.1878 -2.7332 13 7 1.6664 2.0925 1.2586 14 6 0.4165 2.6749 1.3929 15 7 -0.4540 2.6498 0.3857 16 6 -1.6404 3.2069 0.5322 17 17 -2.7582 3.1532 -0.7950 18 7 -2.0078 3.8013 1.6446 19 6 -1.1932 3.8799 2.7065 20 6 0.0499 3.2955 2.5813 21 16 0.9144 3.5153 4.1140 22 8 1.3853 2.2236 4.4731 23 8 1.7973 4.6076 3.8987 24 6 -0.5353 4.0097 5.1262 25 6 -1.4766 4.5476 4.0274 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.8262 1.5978 -2.3958 32 1 2.2940 2.1153 1.9978 33 1 -0.9729 3.1503 5.6343 34 1 -0.2711 4.7927 5.8370 35 1 -2.5102 4.3533 4.3136 36 1 -1.3293 5.6226 3.9233 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055414.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:47 Heat of formation + Delta-G solvation = -13.350878 kcal Electronic energy + Delta-G solvation = -24824.349431 eV Core-core repulsion = 21076.426643 eV Total energy + Delta-G solvation = -3747.922788 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.08195 -37.46200 -37.14871 -36.96486 -35.96843 -35.39260 -33.42028 -32.10010 -31.77638 -29.91978 -27.47905 -25.64208 -24.20971 -23.06653 -22.16292 -20.22630 -19.24012 -18.44774 -17.80771 -17.32558 -16.80145 -16.44993 -15.82512 -15.45284 -15.19045 -15.04996 -14.64820 -14.01396 -13.77546 -13.45340 -13.37016 -12.87055 -12.69530 -12.59471 -12.17812 -12.15858 -12.08577 -12.03108 -11.85669 -11.47811 -11.16552 -11.00190 -10.90266 -10.84846 -10.56508 -10.31930 -10.05415 -9.93116 -9.82518 -9.40438 -9.23330 -8.79217 -7.94564 -6.33153 -4.39206 -0.11075 0.48466 1.31327 1.35059 2.55827 3.16815 3.25861 3.27573 3.32230 3.42078 3.50541 3.56972 3.95976 4.04739 4.22757 4.60754 4.72261 4.79700 4.89976 5.00168 5.08675 5.15996 5.28137 5.86988 5.91274 5.94912 6.10957 6.39611 6.61542 6.64876 6.80176 6.81398 7.15586 7.24045 7.44465 7.67922 8.14992 8.27994 8.68751 9.25538 10.77968 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.005973 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.234900 B = 4686.742727 C = 6287.349362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.231 3.769 4 H 0.063 0.937 5 C -0.539 4.539 6 H 0.083 0.917 7 C 0.086 3.914 8 N -0.879 5.879 9 Si 0.870 3.130 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.255 1.255 13 N -0.649 5.649 14 C 0.550 3.450 15 N -0.549 5.549 16 C 0.447 3.553 17 Cl 0.022 6.978 18 N -0.570 5.570 19 C 0.276 3.724 20 C -0.832 4.832 21 S 2.481 3.519 22 O -0.924 6.924 23 O -0.919 6.919 24 C -0.573 4.573 25 C -0.079 4.079 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.270 0.730 32 H 0.410 0.590 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.122 0.878 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.920 5.055 11.186 20.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C 0.130 3.870 4 H 0.081 0.919 5 C -0.576 4.576 6 H 0.101 0.899 7 C -0.120 4.120 8 N -0.515 5.515 9 Si 0.696 3.304 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.180 1.180 13 N -0.270 5.270 14 C 0.300 3.700 15 N -0.278 5.278 16 C 0.150 3.850 17 Cl 0.050 6.950 18 N -0.295 5.295 19 C 0.130 3.870 20 C -0.931 4.931 21 S 2.657 3.343 22 O -0.921 6.921 23 O -0.915 6.915 24 C -0.704 4.704 25 C -0.118 4.118 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.248 0.752 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.140 0.860 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.290 4.710 10.106 18.923 hybrid contribution -0.733 0.300 -0.502 0.937 sum -16.023 5.009 9.604 19.341 Atomic orbital electron populations 1.21925 0.97486 0.99200 1.01547 1.22085 0.93663 0.98777 1.01951 1.19556 0.96309 0.89649 0.81490 0.91929 1.20966 0.88170 1.52589 0.95913 0.89930 1.24919 0.94940 0.93360 0.98755 1.69869 1.09728 1.47124 1.24733 0.86943 0.81415 0.79793 0.82241 1.19710 1.20913 1.17959 1.46306 1.09340 1.52105 1.19201 1.17184 0.86079 0.82069 0.84689 1.68156 1.03089 1.25603 1.30905 1.22435 0.87308 0.87503 0.87792 1.98429 1.58225 1.96322 1.42030 1.67189 1.37429 1.24867 0.99976 1.21433 0.86720 0.85769 0.93117 1.30833 1.15206 1.25508 1.21536 1.06325 0.76170 0.75628 0.76133 1.93628 1.77975 1.38141 1.82354 1.93663 1.59412 1.54581 1.83886 1.30387 1.17885 1.12817 1.09295 1.20566 1.03604 1.01753 0.85861 0.94211 0.92339 0.94590 0.91289 0.92545 0.91969 0.75200 0.83220 0.82805 0.85971 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.46 37.16 0.31 -2.39 16 2 C -0.13 -2.65 5.59 -26.73 -0.15 -2.80 16 3 C 0.23 5.36 1.90 -69.08 -0.13 5.23 16 4 H 0.06 1.52 4.72 -51.93 -0.25 1.27 16 5 C -0.54 -14.39 9.05 -34.44 -0.31 -14.70 16 6 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 7 C 0.09 2.37 5.47 -17.82 -0.10 2.28 16 8 N -0.88 -25.58 13.96 55.43 0.77 -24.80 16 9 Si 0.87 20.86 26.99 -169.99 -4.59 16.27 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.26 -5.87 6.82 56.52 0.39 -5.48 16 13 N -0.65 -13.65 5.15 -55.05 -0.28 -13.94 16 14 C 0.55 10.59 6.05 -154.88 -0.94 9.65 16 15 N -0.55 -10.55 6.64 -11.11 -0.07 -10.62 16 16 C 0.45 7.58 8.14 -92.44 -0.75 6.83 16 17 Cl 0.02 0.32 29.25 -51.86 -1.52 -1.20 16 18 N -0.57 -8.70 10.38 -7.82 -0.08 -8.78 16 19 C 0.28 3.66 7.13 -81.73 -0.58 3.08 16 20 C -0.83 -13.11 6.12 -39.41 -0.24 -13.36 16 21 S 2.48 31.56 5.78 -107.50 -0.62 30.94 16 22 O -0.92 -14.33 17.69 -57.36 -1.01 -15.35 16 23 O -0.92 -14.50 18.01 -57.36 -1.03 -15.53 16 24 C -0.57 -3.50 7.67 37.87 0.29 -3.21 16 25 C -0.08 -0.60 6.30 -27.17 -0.17 -0.77 16 26 H 0.04 0.75 5.57 -51.93 -0.29 0.46 16 27 H 0.06 1.12 7.73 -51.93 -0.40 0.72 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.48 8.14 -51.92 -0.42 1.05 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.41 8.35 7.93 -40.82 -0.32 8.03 16 33 H 0.15 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.15 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 326.07 15.07 4.91 4.91 Total: -1.00 -34.01 326.07 -10.09 -44.09 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.79 Total: 4.17 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.77 Total: -10.17 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.34 Total: -58.14 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -2.05 Total: -30.88 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.59 Total: 16.27 kcal Atomic # 16 Polarization: 31.56 SS G_CDS: -0.62 Total: 30.94 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.52 Total: -1.20 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.01 -10.09 -44.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055414.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.743 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds