Wall clock time and date at job start Tue Mar 31 2020 16:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86803 * 119.99583 * 2 1 4 4 H 1.48503 * 109.46837 * 240.00158 * 3 2 1 5 5 H 1.48505 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47306 * 119.99910 * 3 2 1 7 7 C 1.39916 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99670 * 164.85743 * 7 2 1 9 9 C 1.41180 * 120.00094 * 344.85835 * 7 2 1 10 10 C 1.40839 * 120.57189 * 151.95560 * 9 7 2 11 11 N 1.31425 * 120.38045 * 179.70240 * 10 9 7 12 12 C 1.32710 * 121.75677 * 0.56315 * 11 10 9 13 13 N 1.38766 * 119.43101 * 179.70519 * 12 11 10 14 14 N 1.40127 * 125.59376 * 133.13593 * 13 12 11 15 15 H 0.97001 * 125.88806 * 0.03678 * 14 13 12 16 16 C 1.37784 * 108.22346 * 180.02562 * 14 13 12 17 17 C 1.38834 * 134.10349 * 180.02562 * 16 14 13 18 18 C 1.38224 * 119.38108 * 180.27692 * 17 16 14 19 19 N 1.31885 * 121.72747 * 359.41501 * 18 17 16 20 20 C 1.33477 * 122.04330 * 0.59792 * 19 18 17 21 21 O 1.22323 * 120.12436 * 179.72606 * 20 19 18 22 22 C 1.41352 * 107.45099 * 359.97438 * 16 14 13 23 23 C 1.36173 * 125.59392 * 313.13833 * 13 12 11 24 24 N 1.35858 * 125.94024 * 0.04285 * 23 13 12 25 25 C 1.39698 * 121.14099 * 359.43620 * 12 11 10 26 26 Cl 1.73598 * 120.25902 * 180.29753 * 25 12 11 27 27 C 1.36735 * 119.47643 * 0.26673 * 25 12 11 28 28 H 0.96996 * 120.00292 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.80987 * 359.97438 * 10 9 7 30 30 H 1.08002 * 120.30782 * 359.97438 * 17 16 14 31 31 H 1.08002 * 119.13563 * 179.69919 * 18 17 16 32 32 H 0.96995 * 119.99992 * 0.02562 * 24 23 13 33 33 H 0.97000 * 120.00003 * 179.97438 * 24 23 13 34 34 H 1.08002 * 120.80047 * 179.97438 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0963 1.6965 -1.2126 5 1 1.2774 2.7465 -0.0006 6 1 3.0963 1.6966 1.2124 7 6 2.0083 -1.2117 0.0005 8 1 3.0602 -1.2279 -0.2438 9 6 1.3393 -2.4130 0.3204 10 6 1.7817 -3.6417 -0.2071 11 7 1.1595 -4.7585 0.0979 12 6 0.0983 -4.7717 0.8946 13 7 -0.5253 -5.9782 1.1797 14 7 -0.9133 -6.4147 2.4534 15 1 -0.7926 -5.9267 3.2830 16 6 -1.4959 -7.6566 2.3243 17 6 -2.0567 -8.5585 3.2186 18 6 -2.5632 -9.7550 2.7471 19 7 -2.5390 -10.0610 1.4645 20 6 -2.0152 -9.2412 0.5506 21 8 -2.0068 -9.5627 -0.6296 22 6 -1.4704 -7.9963 0.9525 23 6 -0.8605 -6.9321 0.2676 24 7 -0.6421 -6.8665 -1.0717 25 6 -0.3986 -3.5928 1.4556 26 17 -1.7839 -3.6376 2.5010 27 6 0.2151 -2.4035 1.1754 28 1 -0.4850 0.8400 0.0004 29 1 2.6397 -3.6668 -0.8625 30 1 -2.0924 -8.3293 4.2734 31 1 -2.9941 -10.4558 3.4468 32 1 -0.2104 -6.0871 -1.4551 33 1 -0.9171 -7.5995 -1.6445 34 1 -0.1514 -1.4792 1.5972 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162312145.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:12 Heat of formation + Delta-G solvation = 98.697314 kcal Electronic energy + Delta-G solvation = -25001.184537 eV Core-core repulsion = 21154.969323 eV Total energy + Delta-G solvation = -3846.215214 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.79068 -39.39287 -38.15768 -36.34373 -36.16906 -34.99775 -34.78007 -32.65901 -31.41186 -30.13869 -29.73471 -28.59778 -26.32214 -24.03365 -23.16282 -22.17271 -21.71231 -21.00709 -18.71255 -18.30555 -17.86947 -16.83889 -16.54747 -16.22139 -15.94198 -15.53911 -15.15352 -14.97341 -14.85921 -14.10948 -13.85086 -13.73985 -13.29565 -13.22147 -12.82723 -12.54878 -12.22205 -11.97419 -11.81702 -11.69433 -11.51077 -11.39056 -10.98208 -10.67236 -10.61577 -10.11496 -9.80599 -9.73031 -9.20350 -8.98366 -8.37547 -8.16586 -8.12072 -7.67256 -6.85777 -5.33009 0.97785 1.21421 1.69086 2.00063 2.40339 2.41197 2.58422 2.62220 2.64405 2.80076 3.28415 3.48164 3.75352 3.85947 4.62271 4.82172 4.93557 4.97537 5.30168 5.34564 5.50573 5.63607 5.81458 5.90692 6.03414 6.13312 6.25034 6.34349 6.47036 6.63399 6.79659 6.86440 6.95455 7.09345 7.22039 7.45692 7.60760 7.65398 7.75255 7.77573 8.49512 8.85910 9.22315 9.29882 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.025494 B = 0.003370 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.042807 B = 8307.554392 C = 8973.482988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.065 3.935 3 Si 0.927 3.073 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.398 4.398 8 H 0.102 0.898 9 C 0.073 3.927 10 C 0.013 3.987 11 N -0.440 5.440 12 C 0.131 3.869 13 N -0.277 5.277 14 N -0.482 5.482 15 H 0.447 0.553 16 C 0.290 3.710 17 C -0.364 4.364 18 C 0.252 3.748 19 N -0.628 5.628 20 C 0.555 3.445 21 O -0.579 6.579 22 C -0.402 4.402 23 C 0.547 3.453 24 N -0.782 5.782 25 C -0.024 4.024 26 Cl -0.088 7.088 27 C -0.118 4.118 28 H 0.299 0.701 29 H 0.153 0.847 30 H 0.121 0.879 31 H 0.145 0.855 32 H 0.415 0.585 33 H 0.437 0.563 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.694 2.820 4.343 5.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.160 4.160 3 Si 0.749 3.251 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.425 4.425 8 H 0.120 0.880 9 C 0.066 3.934 10 C -0.155 4.155 11 N -0.150 5.150 12 C -0.090 4.090 13 N -0.061 5.061 14 N -0.205 5.205 15 H 0.295 0.705 16 C 0.171 3.829 17 C -0.395 4.395 18 C 0.081 3.919 19 N -0.364 5.364 20 C 0.350 3.650 21 O -0.467 6.467 22 C -0.418 4.418 23 C 0.304 3.696 24 N -0.325 5.325 25 C -0.055 4.055 26 Cl -0.060 7.060 27 C -0.143 4.143 28 H 0.111 0.889 29 H 0.170 0.830 30 H 0.139 0.861 31 H 0.162 0.838 32 H 0.248 0.752 33 H 0.274 0.726 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.504 1.728 3.104 3.858 hybrid contribution 0.434 2.939 1.069 3.157 sum 1.937 4.667 4.173 6.553 Atomic orbital electron populations 1.69718 1.08072 1.31851 1.27827 1.26272 0.95123 1.02822 0.91772 0.85995 0.80125 0.78107 0.80902 1.18027 1.19499 1.17977 1.19901 0.98001 0.90156 1.34478 0.88034 1.18572 0.91269 0.94234 0.89278 1.22495 1.02302 0.86543 1.04208 1.66396 1.03571 1.32436 1.12582 1.16449 0.99770 0.79378 1.13410 1.42114 1.52439 1.14777 0.96724 1.44070 1.61089 1.17107 0.98226 0.70469 1.18379 0.87850 0.81961 0.94664 1.20036 1.22545 0.98501 0.98413 1.22281 0.86165 0.91221 0.92272 1.68901 1.29009 1.36078 1.02385 1.16632 0.78195 0.81584 0.88618 1.90707 1.60443 1.77926 1.17594 1.19947 1.25858 1.03094 0.92911 1.17529 0.84252 0.85260 0.82591 1.41576 1.62622 1.25697 1.02631 1.21134 0.91469 0.94552 0.98375 1.98321 1.42858 1.98684 1.66123 1.21297 0.98255 0.95388 0.99318 0.88885 0.83005 0.86142 0.83759 0.75235 0.72596 0.83714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -14.46 11.07 55.55 0.62 -13.84 16 2 C 0.07 1.17 5.19 -17.33 -0.09 1.08 16 3 Si 0.93 13.53 29.59 -169.99 -5.03 8.51 16 4 H -0.26 -3.73 7.11 56.52 0.40 -3.33 16 5 H -0.27 -3.96 7.11 56.52 0.40 -3.56 16 6 H -0.26 -3.76 7.11 56.52 0.40 -3.36 16 7 C -0.40 -7.42 9.06 -37.84 -0.34 -7.76 16 8 H 0.10 1.72 7.89 -52.49 -0.41 1.30 16 9 C 0.07 1.40 5.55 -106.66 -0.59 0.81 16 10 C 0.01 0.23 10.97 -16.74 -0.18 0.05 16 11 N -0.44 -8.10 9.20 -11.69 -0.11 -8.21 16 12 C 0.13 2.42 6.85 -154.77 -1.06 1.36 16 13 N -0.28 -4.89 3.42 -11.03 -0.04 -4.93 16 14 N -0.48 -7.68 6.08 32.52 0.20 -7.48 16 15 H 0.45 6.13 7.99 -182.58 -1.46 4.67 16 16 C 0.29 4.97 7.36 -83.79 -0.62 4.35 16 17 C -0.36 -5.55 10.11 -39.37 -0.40 -5.95 16 18 C 0.25 4.08 11.14 -17.53 -0.20 3.89 16 19 N -0.63 -13.04 10.41 -15.09 -0.16 -13.20 16 20 C 0.55 12.32 7.72 -15.51 -0.12 12.20 16 21 O -0.58 -14.07 16.93 4.62 0.08 -13.99 16 22 C -0.40 -7.86 6.13 -106.54 -0.65 -8.52 16 23 C 0.55 9.93 7.88 -154.14 -1.21 8.71 16 24 N -0.78 -12.24 8.89 31.48 0.28 -11.96 16 25 C -0.02 -0.44 6.31 -39.58 -0.25 -0.69 16 26 Cl -0.09 -1.45 26.52 -51.86 -1.38 -2.82 16 27 C -0.12 -2.29 8.49 -38.98 -0.33 -2.62 16 28 H 0.30 5.20 8.30 -40.82 -0.34 4.86 16 29 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.42 6.10 7.59 -40.82 -0.31 5.79 16 33 H 0.44 6.58 7.86 -40.82 -0.32 6.26 16 34 H 0.15 2.91 6.43 -52.49 -0.34 2.57 16 LS Contribution 316.41 15.07 4.77 4.77 Total: -1.00 -26.67 316.41 -10.06 -36.73 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -3.24 Total: 19.50 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: -6.05 Total: 6.92 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.79 Total: -59.62 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.08 Total: -13.99 kcal Atomic # 14 Polarization: 13.53 SS G_CDS: -5.03 Total: 8.51 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -1.38 Total: -2.82 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.67 -10.06 -36.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162312145.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.428 kcal (2) G-P(sol) polarization free energy of solvation -26.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds