Wall clock time and date at job start Tue Mar 31 2020 16:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86803 * 119.99583 * 2 1 4 4 H 1.48503 * 109.46837 * 240.00158 * 3 2 1 5 5 H 1.48505 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47306 * 119.99910 * 3 2 1 7 7 C 1.39916 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99670 * 164.85743 * 7 2 1 9 9 C 1.41180 * 120.00094 * 344.85835 * 7 2 1 10 10 C 1.40839 * 120.57189 * 151.95560 * 9 7 2 11 11 N 1.31425 * 120.38045 * 179.70240 * 10 9 7 12 12 C 1.32710 * 121.75677 * 0.56315 * 11 10 9 13 13 N 1.38766 * 119.43101 * 179.70519 * 12 11 10 14 14 N 1.40127 * 125.59376 * 133.13593 * 13 12 11 15 15 H 0.97001 * 125.88806 * 0.03678 * 14 13 12 16 16 C 1.37784 * 108.22346 * 180.02562 * 14 13 12 17 17 C 1.38834 * 134.10349 * 180.02562 * 16 14 13 18 18 C 1.38224 * 119.38108 * 180.27692 * 17 16 14 19 19 N 1.31885 * 121.72747 * 359.41501 * 18 17 16 20 20 C 1.33477 * 122.04330 * 0.59792 * 19 18 17 21 21 O 1.22323 * 120.12436 * 179.72606 * 20 19 18 22 22 C 1.41352 * 107.45099 * 359.97438 * 16 14 13 23 23 C 1.36173 * 125.59392 * 313.13833 * 13 12 11 24 24 N 1.35858 * 125.94024 * 0.04285 * 23 13 12 25 25 C 1.39698 * 121.14099 * 359.43620 * 12 11 10 26 26 Cl 1.73598 * 120.25902 * 180.29753 * 25 12 11 27 27 C 1.36735 * 119.47643 * 0.26673 * 25 12 11 28 28 H 0.96996 * 120.00292 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.80987 * 359.97438 * 10 9 7 30 30 H 1.08002 * 120.30782 * 359.97438 * 17 16 14 31 31 H 1.08002 * 119.13563 * 179.69919 * 18 17 16 32 32 H 0.96995 * 119.99992 * 0.02562 * 24 23 13 33 33 H 0.97000 * 120.00003 * 179.97438 * 24 23 13 34 34 H 1.08002 * 120.80047 * 179.97438 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0963 1.6965 -1.2126 5 1 1.2774 2.7465 -0.0006 6 1 3.0963 1.6966 1.2124 7 6 2.0083 -1.2117 0.0005 8 1 3.0602 -1.2279 -0.2438 9 6 1.3393 -2.4130 0.3204 10 6 1.7817 -3.6417 -0.2071 11 7 1.1595 -4.7585 0.0979 12 6 0.0983 -4.7717 0.8946 13 7 -0.5253 -5.9782 1.1797 14 7 -0.9133 -6.4147 2.4534 15 1 -0.7926 -5.9267 3.2830 16 6 -1.4959 -7.6566 2.3243 17 6 -2.0567 -8.5585 3.2186 18 6 -2.5632 -9.7550 2.7471 19 7 -2.5390 -10.0610 1.4645 20 6 -2.0152 -9.2412 0.5506 21 8 -2.0068 -9.5627 -0.6296 22 6 -1.4704 -7.9963 0.9525 23 6 -0.8605 -6.9321 0.2676 24 7 -0.6421 -6.8665 -1.0717 25 6 -0.3986 -3.5928 1.4556 26 17 -1.7839 -3.6376 2.5010 27 6 0.2151 -2.4035 1.1754 28 1 -0.4850 0.8400 0.0004 29 1 2.6397 -3.6668 -0.8625 30 1 -2.0924 -8.3293 4.2734 31 1 -2.9941 -10.4558 3.4468 32 1 -0.2104 -6.0871 -1.4551 33 1 -0.9171 -7.5995 -1.6445 34 1 -0.1514 -1.4792 1.5972 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162312145.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:11 Heat of formation + Delta-G solvation = 82.154010 kcal Electronic energy + Delta-G solvation = -25001.901908 eV Core-core repulsion = 21154.969323 eV Total energy + Delta-G solvation = -3846.932585 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.16780 -40.81788 -39.62136 -37.72268 -37.59137 -36.38876 -36.20079 -34.05809 -32.84119 -31.54286 -31.11951 -29.98454 -27.73884 -25.44537 -24.55973 -23.58040 -23.14318 -22.36546 -20.10940 -19.71166 -19.23805 -18.20099 -17.93291 -17.54827 -17.34319 -16.98151 -16.55589 -16.29420 -16.20894 -15.56500 -15.26646 -15.15216 -14.76002 -14.50997 -14.18955 -13.92956 -13.58889 -13.30387 -13.10087 -13.03024 -12.83178 -12.69846 -12.19696 -12.09410 -11.96509 -11.44087 -11.36421 -11.13781 -10.63117 -10.41617 -9.78772 -9.64004 -9.51956 -9.03696 -8.27893 -6.76390 -0.41544 -0.13014 0.28188 0.55791 0.98421 1.00231 1.38642 1.41913 1.47189 1.53114 2.06677 2.14757 2.41599 2.50781 3.20219 3.43566 3.49522 3.58388 3.94550 3.96374 4.18097 4.31852 4.39924 4.52474 4.71472 4.77735 4.89408 5.03441 5.14946 5.26690 5.41307 5.47107 5.54585 5.78451 5.94056 6.05354 6.28010 6.31006 6.36893 6.42703 7.07071 7.32912 7.84517 7.88260 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.025494 B = 0.003370 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.042807 B = 8307.554392 C = 8973.482988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.252 1.252 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.412 4.412 8 H 0.116 0.884 9 C 0.055 3.945 10 C 0.013 3.987 11 N -0.444 5.444 12 C 0.122 3.878 13 N -0.278 5.278 14 N -0.471 5.471 15 H 0.457 0.543 16 C 0.285 3.715 17 C -0.344 4.344 18 C 0.249 3.751 19 N -0.666 5.666 20 C 0.536 3.464 21 O -0.625 6.625 22 C -0.424 4.424 23 C 0.540 3.460 24 N -0.769 5.769 25 C -0.026 4.026 26 Cl -0.072 7.072 27 C -0.134 4.134 28 H 0.305 0.695 29 H 0.174 0.826 30 H 0.162 0.838 31 H 0.190 0.810 32 H 0.420 0.580 33 H 0.440 0.560 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.275 3.727 5.844 7.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.187 4.187 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.438 4.438 8 H 0.134 0.866 9 C 0.048 3.952 10 C -0.155 4.155 11 N -0.155 5.155 12 C -0.099 4.099 13 N -0.061 5.061 14 N -0.195 5.195 15 H 0.308 0.692 16 C 0.166 3.834 17 C -0.374 4.374 18 C 0.081 3.919 19 N -0.405 5.405 20 C 0.332 3.668 21 O -0.516 6.516 22 C -0.440 4.440 23 C 0.295 3.705 24 N -0.312 5.312 25 C -0.058 4.058 26 Cl -0.044 7.044 27 C -0.159 4.159 28 H 0.116 0.884 29 H 0.191 0.809 30 H 0.180 0.820 31 H 0.207 0.793 32 H 0.254 0.746 33 H 0.277 0.723 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.078 2.636 4.658 5.741 hybrid contribution 0.225 2.666 0.683 2.761 sum 2.303 5.302 5.340 7.870 Atomic orbital electron populations 1.69760 1.09371 1.32877 1.28390 1.27006 0.95523 1.05317 0.90831 0.85052 0.78753 0.74416 0.80801 1.17574 1.19614 1.17914 1.20267 0.98779 0.90426 1.34365 0.86585 1.18836 0.91575 0.95100 0.89648 1.22854 1.02642 0.86048 1.03996 1.66445 1.03743 1.32567 1.12695 1.16517 0.99965 0.79624 1.13749 1.42070 1.52309 1.14450 0.97318 1.44005 1.60742 1.16806 0.97957 0.69189 1.18605 0.88177 0.82530 0.94083 1.20525 1.19699 0.97115 1.00067 1.23033 0.85137 0.92309 0.91374 1.68855 1.30566 1.36860 1.04192 1.16978 0.78618 0.82604 0.88552 1.90650 1.62848 1.79039 1.19108 1.19868 1.26739 1.02832 0.94573 1.17648 0.84307 0.85268 0.83284 1.41567 1.61796 1.25815 1.02046 1.21164 0.91832 0.94288 0.98477 1.98317 1.41870 1.98661 1.65506 1.21249 0.99121 0.95281 1.00205 0.88352 0.80865 0.82026 0.79319 0.74647 0.72314 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -29.78 11.07 21.82 0.24 -29.54 16 2 C 0.04 1.25 5.19 85.24 0.44 1.69 16 3 Si 0.99 26.46 29.59 68.60 2.03 28.49 16 4 H -0.25 -6.53 7.11 99.48 0.71 -5.82 16 5 H -0.27 -7.24 7.11 99.48 0.71 -6.53 16 6 H -0.26 -6.76 7.11 99.48 0.71 -6.05 16 7 C -0.41 -14.95 9.06 23.40 0.21 -14.73 16 8 H 0.12 3.74 7.89 -2.91 -0.02 3.72 16 9 C 0.05 2.09 5.55 -21.18 -0.12 1.97 16 10 C 0.01 0.47 10.97 85.39 0.94 1.41 16 11 N -0.44 -16.04 9.20 -190.89 -1.76 -17.80 16 12 C 0.12 4.42 6.85 133.19 0.91 5.34 16 13 N -0.28 -9.59 3.42 -188.80 -0.65 -10.23 16 14 N -0.47 -14.18 6.08 -51.03 -0.31 -14.49 16 15 H 0.46 11.53 7.99 -213.30 -1.70 9.83 16 16 C 0.28 9.26 7.36 39.12 0.29 9.54 16 17 C -0.34 -9.36 10.11 22.41 0.23 -9.14 16 18 C 0.25 7.44 11.14 84.68 0.94 8.38 16 19 N -0.67 -27.42 10.41 -320.34 -3.33 -30.76 16 20 C 0.54 24.16 7.72 85.30 0.66 24.81 16 21 O -0.62 -31.50 16.93 -6.38 -0.11 -31.61 16 22 C -0.42 -16.54 6.13 -21.11 -0.13 -16.67 16 23 C 0.54 19.52 7.88 133.27 1.05 20.57 16 24 N -0.77 -24.32 8.89 -54.33 -0.48 -24.81 16 25 C -0.03 -0.94 6.31 22.27 0.14 -0.80 16 26 Cl -0.07 -2.28 26.52 -2.72 -0.07 -2.35 16 27 C -0.13 -5.18 8.49 22.66 0.19 -4.99 16 28 H 0.30 10.49 8.30 -92.71 -0.77 9.72 16 29 H 0.17 5.17 8.06 -2.91 -0.02 5.15 16 30 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 31 H 0.19 3.77 8.06 -2.91 -0.02 3.75 16 32 H 0.42 12.34 7.59 -92.71 -0.70 11.64 16 33 H 0.44 13.65 7.86 -92.71 -0.73 12.92 16 34 H 0.13 5.44 6.43 -2.91 -0.02 5.42 16 Total: -1.00 -58.36 316.41 -0.58 -58.94 By element: Atomic # 1 Polarization: 48.68 SS G_CDS: -1.90 Total: 46.78 kcal Atomic # 6 Polarization: 21.62 SS G_CDS: 5.76 Total: 27.38 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -6.29 Total: -127.63 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.11 Total: -31.61 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: 2.03 Total: 28.49 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.07 Total: -2.35 kcal Total: -58.36 -0.58 -58.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162312145.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.097 kcal (2) G-P(sol) polarization free energy of solvation -58.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds