Wall clock time and date at job start Tue Mar 31 2020 16:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86793 * 120.00365 * 2 1 4 4 H 1.48502 * 109.47293 * 264.73743 * 3 2 1 5 5 H 1.48503 * 109.47310 * 24.73513 * 3 2 1 6 6 H 1.48503 * 109.47392 * 144.73861 * 3 2 1 7 7 C 1.40022 * 119.99530 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00089 * 348.68968 * 7 2 1 9 9 C 1.41338 * 119.99737 * 168.69563 * 7 2 1 10 10 C 1.40628 * 119.78793 * 170.09780 * 9 7 2 11 11 C 1.38301 * 119.12955 * 179.97438 * 10 9 7 12 12 C 1.38706 * 118.66980 * 0.02562 * 11 10 9 13 13 C 1.39632 * 119.49560 * 359.97438 * 12 11 10 14 14 N 1.39337 * 119.57172 * 179.97438 * 13 12 11 15 15 C 1.39569 * 120.08840 * 310.37117 * 14 13 12 16 16 N 1.32388 * 129.79320 * 0.02896 * 15 14 13 17 17 C 1.29440 * 117.87768 * 179.97438 * 16 15 14 18 18 O 1.35235 * 124.57218 * 179.97438 * 17 16 15 19 19 S 1.70779 * 110.86029 * 0.24142 * 17 16 15 20 20 C 1.38619 * 117.64389 * 180.02562 * 15 14 13 21 21 C 1.40739 * 119.90345 * 359.97438 * 20 15 14 22 22 O 1.35266 * 119.85479 * 179.97438 * 21 20 15 23 23 N 1.32146 * 120.29335 * 0.02562 * 21 20 15 24 24 C 1.33894 * 121.07759 * 359.97438 * 23 21 20 25 25 N 1.31488 * 119.37467 * 180.02562 * 24 23 21 26 26 N 1.31945 * 120.85096 * 0.25796 * 13 12 11 27 27 H 0.96999 * 119.99881 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.43431 * 359.97438 * 10 9 7 29 29 H 1.07994 * 120.66758 * 179.97438 * 11 10 9 30 30 H 1.07999 * 120.25025 * 179.97438 * 12 11 10 31 31 H 0.96707 * 113.99775 * 85.02000 * 18 17 16 32 32 H 0.96705 * 113.99686 * 270.00779 * 22 21 20 33 33 H 0.97001 * 119.99554 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.6002 1.9821 -1.3942 5 1 1.3878 2.6822 0.5858 6 1 3.4791 1.4747 0.8083 7 6 2.0074 -1.2127 0.0005 8 1 1.4831 -2.1388 0.1844 9 6 3.4003 -1.2247 -0.2394 10 6 4.1344 -2.4064 -0.0338 11 6 5.4965 -2.4030 -0.2733 12 6 6.0926 -1.2289 -0.7091 13 6 5.3094 -0.0879 -0.8946 14 7 5.9066 1.0926 -1.3318 15 6 7.0535 1.5730 -0.6980 16 7 7.7305 1.0712 0.3231 17 6 8.7766 1.7153 0.7308 18 8 9.5646 1.3268 1.7589 19 16 9.0234 3.1258 -0.1999 20 6 7.6054 2.7521 -1.1740 21 6 7.0077 3.4182 -2.2602 22 8 7.5468 4.5690 -2.7236 23 7 5.9216 2.9248 -2.8288 24 6 5.3673 1.7879 -2.3897 25 7 4.2869 1.3269 -2.9807 26 7 4.0119 -0.1117 -0.6558 27 1 -0.4850 0.8400 -0.0004 28 1 3.6410 -3.3047 0.3066 29 1 6.0844 -3.2964 -0.1232 30 1 7.1545 -1.1974 -0.9035 31 1 10.2504 0.6918 1.5107 32 1 7.1999 5.3651 -2.2981 33 1 3.8988 1.8099 -3.7270 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163041975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:25 Heat of formation + Delta-G solvation = 90.246772 kcal Electronic energy + Delta-G solvation = -25745.980915 eV Core-core repulsion = 21901.442965 eV Total energy + Delta-G solvation = -3844.537950 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64019 -39.51423 -38.90900 -37.82971 -37.13563 -34.47026 -33.37473 -32.73707 -31.21140 -29.95725 -28.91112 -25.96031 -25.67535 -24.10140 -22.53933 -21.98664 -21.37155 -19.88283 -19.16464 -18.58106 -18.18935 -17.54926 -17.14720 -16.68034 -15.95207 -15.66482 -15.27321 -14.95089 -14.88795 -14.61246 -14.15785 -13.28158 -12.87122 -12.74416 -12.71533 -12.57704 -12.34646 -11.98100 -11.63086 -11.24940 -10.89958 -10.81153 -10.55122 -10.41108 -10.25972 -10.00319 -9.91889 -9.42884 -9.35276 -9.13167 -8.60647 -8.04118 -7.77523 -7.33707 -6.92098 -4.71003 -0.37052 0.54439 1.10579 1.15157 2.02106 2.12454 2.37103 2.61826 3.18472 3.24360 3.46500 3.62122 3.65003 3.74064 4.13834 4.31850 4.45700 4.55371 4.85439 5.24816 5.48411 5.54605 5.74945 6.11903 6.17307 6.43263 6.45163 6.52121 6.63964 6.89752 7.00831 7.07154 7.21099 7.38211 7.42758 7.76824 7.82493 8.09748 8.47518 8.55377 8.68495 9.44104 9.99619 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013973 B = 0.005479 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.368461 B = 5109.616064 C = 6093.466920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.089 3.911 3 Si 0.989 3.011 4 H -0.247 1.247 5 H -0.339 1.339 6 H -0.277 1.277 7 C -0.402 4.402 8 H 0.099 0.901 9 C 0.259 3.741 10 C -0.254 4.254 11 C -0.038 4.038 12 C -0.284 4.284 13 C 0.380 3.620 14 N -0.431 5.431 15 C 0.437 3.563 16 N -0.499 5.499 17 C 0.293 3.707 18 O -0.428 6.428 19 S 0.227 5.773 20 C -0.384 4.384 21 C 0.486 3.514 22 O -0.475 6.475 23 N -0.540 5.540 24 C 0.543 3.457 25 N -0.667 5.667 26 N -0.536 5.536 27 H 0.289 0.711 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.415 0.585 32 H 0.413 0.587 33 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.712 8.290 0.478 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.135 4.135 3 Si 0.825 3.175 4 H -0.173 1.173 5 H -0.273 1.273 6 H -0.204 1.204 7 C -0.433 4.433 8 H 0.117 0.883 9 C 0.136 3.864 10 C -0.276 4.276 11 C -0.062 4.062 12 C -0.311 4.311 13 C 0.149 3.851 14 N -0.136 5.136 15 C 0.196 3.804 16 N -0.229 5.229 17 C -0.026 4.026 18 O -0.236 6.236 19 S 0.472 5.528 20 C -0.515 4.515 21 C 0.268 3.732 22 O -0.283 6.283 23 N -0.271 5.271 24 C 0.174 3.826 25 N -0.300 5.300 26 N -0.255 5.255 27 H 0.099 0.901 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.120 0.880 31 H 0.276 0.724 32 H 0.274 0.726 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 18.212 8.629 0.083 20.153 hybrid contribution 0.590 -0.108 0.102 0.608 sum 18.801 8.522 0.185 20.643 Atomic orbital electron populations 1.69626 1.08677 1.31140 1.32321 1.26351 0.94827 1.03631 0.88696 0.84745 0.76067 0.75524 0.81193 1.17268 1.27341 1.20431 1.19514 0.89604 0.95923 1.38235 0.88276 1.18313 0.93351 0.86004 0.88781 1.21656 0.93957 0.99601 1.12430 1.20745 0.94528 0.95805 0.95162 1.20597 0.98572 0.93086 1.18809 1.17619 0.89781 0.82382 0.95281 1.41605 1.21177 1.22929 1.27852 1.17261 0.87493 0.87377 0.88241 1.65330 1.08101 1.35641 1.13788 1.24090 0.91478 0.95339 0.91717 1.84832 1.45943 1.64708 1.28142 1.83803 1.22289 1.25192 1.21479 1.24048 1.10281 1.05812 1.11324 1.18550 0.85182 0.86293 0.83217 1.84580 1.63811 1.14338 1.65593 1.69613 1.11987 1.14627 1.30878 1.19120 0.91908 0.84281 0.87330 1.70258 1.07879 1.35450 1.16398 1.66057 1.08455 1.29418 1.21619 0.90117 0.86946 0.87213 0.87989 0.72408 0.72603 0.82767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.01 13.92 55.55 0.77 -21.24 16 2 C 0.09 2.48 5.52 -17.35 -0.10 2.38 16 3 Si 0.99 26.00 25.43 -169.99 -4.32 21.68 16 4 H -0.25 -6.57 5.62 56.52 0.32 -6.25 16 5 H -0.34 -8.73 7.11 56.52 0.40 -8.33 16 6 H -0.28 -7.74 6.56 56.52 0.37 -7.37 16 7 C -0.40 -11.25 9.68 -37.73 -0.37 -11.62 16 8 H 0.10 2.77 8.06 -52.49 -0.42 2.34 16 9 C 0.26 6.94 6.29 -84.99 -0.53 6.41 16 10 C -0.25 -5.95 9.83 -38.66 -0.38 -6.33 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.28 -6.26 9.06 -38.89 -0.35 -6.61 16 13 C 0.38 9.25 6.13 -154.89 -0.95 8.30 16 14 N -0.43 -9.44 2.93 -63.42 -0.19 -9.63 16 15 C 0.44 7.89 7.14 -154.67 -1.10 6.78 16 16 N -0.50 -8.14 9.54 -14.17 -0.14 -8.28 16 17 C 0.29 3.34 8.57 51.75 0.44 3.78 16 18 O -0.43 -3.50 13.62 -17.40 -0.24 -3.73 16 19 S 0.23 2.09 23.19 -107.50 -2.49 -0.40 16 20 C -0.38 -5.47 6.51 -38.50 -0.25 -5.73 16 21 C 0.49 7.06 7.80 -16.47 -0.13 6.93 16 22 O -0.48 -4.88 13.55 -17.49 -0.24 -5.12 16 23 N -0.54 -9.85 10.45 -13.93 -0.15 -10.00 16 24 C 0.54 11.73 8.32 -323.42 -2.69 9.04 16 25 N -0.67 -15.48 11.15 29.67 0.33 -15.15 16 26 N -0.54 -14.35 3.84 -10.23 -0.04 -14.39 16 27 H 0.29 7.36 8.29 -40.82 -0.34 7.02 16 28 H 0.11 2.41 8.06 -52.49 -0.42 1.98 16 29 H 0.11 1.90 8.06 -52.49 -0.42 1.47 16 30 H 0.10 2.04 7.68 -52.49 -0.40 1.63 16 31 H 0.42 1.02 9.06 45.56 0.41 1.43 16 32 H 0.41 2.06 9.06 45.56 0.41 2.47 16 33 H 0.35 7.42 8.89 -40.82 -0.36 7.06 16 LS Contribution 309.10 15.07 4.66 4.66 Total: -1.00 -36.71 309.10 -9.30 -46.01 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -0.46 Total: 3.47 kcal Atomic # 6 Polarization: 18.94 SS G_CDS: -6.81 Total: 12.13 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: 0.60 Total: -78.69 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.47 Total: -8.85 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -4.32 Total: 21.68 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.49 Total: -0.40 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -36.71 -9.30 -46.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163041975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.256 kcal (2) G-P(sol) polarization free energy of solvation -36.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds