Wall clock time and date at job start Tue Mar 31 2020 16:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86793 * 120.00365 * 2 1 4 4 H 1.48502 * 109.47293 * 264.73743 * 3 2 1 5 5 H 1.48503 * 109.47310 * 24.73513 * 3 2 1 6 6 H 1.48503 * 109.47392 * 144.73861 * 3 2 1 7 7 C 1.40022 * 119.99530 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00089 * 348.68968 * 7 2 1 9 9 C 1.41338 * 119.99737 * 168.69563 * 7 2 1 10 10 C 1.40628 * 119.78793 * 170.09780 * 9 7 2 11 11 C 1.38301 * 119.12955 * 179.97438 * 10 9 7 12 12 C 1.38706 * 118.66980 * 0.02562 * 11 10 9 13 13 C 1.39632 * 119.49560 * 359.97438 * 12 11 10 14 14 N 1.39337 * 119.57172 * 179.97438 * 13 12 11 15 15 C 1.39569 * 120.08840 * 310.37117 * 14 13 12 16 16 N 1.32388 * 129.79320 * 0.02896 * 15 14 13 17 17 C 1.29440 * 117.87768 * 179.97438 * 16 15 14 18 18 O 1.35235 * 124.57218 * 179.97438 * 17 16 15 19 19 S 1.70779 * 110.86029 * 0.24142 * 17 16 15 20 20 C 1.38619 * 117.64389 * 180.02562 * 15 14 13 21 21 C 1.40739 * 119.90345 * 359.97438 * 20 15 14 22 22 O 1.35266 * 119.85479 * 179.97438 * 21 20 15 23 23 N 1.32146 * 120.29335 * 0.02562 * 21 20 15 24 24 C 1.33894 * 121.07759 * 359.97438 * 23 21 20 25 25 N 1.31488 * 119.37467 * 180.02562 * 24 23 21 26 26 N 1.31945 * 120.85096 * 0.25796 * 13 12 11 27 27 H 0.96999 * 119.99881 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.43431 * 359.97438 * 10 9 7 29 29 H 1.07994 * 120.66758 * 179.97438 * 11 10 9 30 30 H 1.07999 * 120.25025 * 179.97438 * 12 11 10 31 31 H 0.96707 * 113.99775 * 85.02000 * 18 17 16 32 32 H 0.96705 * 113.99686 * 270.00779 * 22 21 20 33 33 H 0.97001 * 119.99554 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.6002 1.9821 -1.3942 5 1 1.3878 2.6822 0.5858 6 1 3.4791 1.4747 0.8083 7 6 2.0074 -1.2127 0.0005 8 1 1.4831 -2.1388 0.1844 9 6 3.4003 -1.2247 -0.2394 10 6 4.1344 -2.4064 -0.0338 11 6 5.4965 -2.4030 -0.2733 12 6 6.0926 -1.2289 -0.7091 13 6 5.3094 -0.0879 -0.8946 14 7 5.9066 1.0926 -1.3318 15 6 7.0535 1.5730 -0.6980 16 7 7.7305 1.0712 0.3231 17 6 8.7766 1.7153 0.7308 18 8 9.5646 1.3268 1.7589 19 16 9.0234 3.1258 -0.1999 20 6 7.6054 2.7521 -1.1740 21 6 7.0077 3.4182 -2.2602 22 8 7.5468 4.5690 -2.7236 23 7 5.9216 2.9248 -2.8288 24 6 5.3673 1.7879 -2.3897 25 7 4.2869 1.3269 -2.9807 26 7 4.0119 -0.1117 -0.6558 27 1 -0.4850 0.8400 -0.0004 28 1 3.6410 -3.3047 0.3066 29 1 6.0844 -3.2964 -0.1232 30 1 7.1545 -1.1974 -0.9035 31 1 10.2504 0.6918 1.5107 32 1 7.1999 5.3651 -2.2981 33 1 3.8988 1.8099 -3.7270 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163041975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:24 Heat of formation + Delta-G solvation = 58.540269 kcal Electronic energy + Delta-G solvation = -25747.355812 eV Core-core repulsion = 21901.442965 eV Total energy + Delta-G solvation = -3845.912847 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.91708 -40.67668 -40.36071 -38.97970 -38.17119 -36.07966 -35.17433 -34.08516 -33.06964 -31.64628 -30.27339 -27.76942 -26.84535 -25.48372 -23.92651 -23.41421 -23.10891 -20.95481 -20.22202 -19.86524 -19.74411 -19.20912 -18.19653 -17.84913 -17.33361 -17.09365 -16.72447 -16.51156 -16.41251 -16.16099 -15.59925 -14.79112 -14.67540 -14.43699 -14.31141 -13.58281 -13.51631 -13.43606 -13.01160 -12.87070 -12.77361 -12.55224 -12.42171 -12.08028 -11.66881 -11.45717 -11.18516 -10.94272 -10.79209 -10.41860 -10.32453 -9.83487 -9.69945 -9.00453 -8.81183 -6.75125 -1.42193 -0.34383 -0.02417 0.05977 0.50135 0.75994 0.86541 0.96564 1.33679 1.53324 1.56136 2.07577 2.20820 2.33646 2.39373 2.53523 2.98005 3.28974 3.53161 3.72219 4.02186 4.15931 4.26953 4.45313 4.50429 4.65512 4.82206 4.95222 5.13639 5.41004 5.51317 5.61053 5.90452 5.97043 6.08623 6.23837 6.34916 6.43545 6.53429 6.58445 7.18944 7.56024 7.99254 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013973 B = 0.005479 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.368461 B = 5109.616064 C = 6093.466920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.066 3.934 3 Si 1.038 2.962 4 H -0.256 1.256 5 H -0.337 1.337 6 H -0.304 1.304 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.243 3.757 10 C -0.263 4.263 11 C -0.028 4.028 12 C -0.265 4.265 13 C 0.363 3.637 14 N -0.453 5.453 15 C 0.409 3.591 16 N -0.548 5.548 17 C 0.294 3.706 18 O -0.426 6.426 19 S 0.367 5.633 20 C -0.401 4.401 21 C 0.510 3.490 22 O -0.463 6.463 23 N -0.572 5.572 24 C 0.551 3.449 25 N -0.724 5.724 26 N -0.560 5.560 27 H 0.294 0.706 28 H 0.129 0.871 29 H 0.159 0.841 30 H 0.127 0.873 31 H 0.441 0.559 32 H 0.440 0.560 33 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.872 9.645 1.189 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.154 4.154 3 Si 0.875 3.125 4 H -0.181 1.181 5 H -0.271 1.271 6 H -0.233 1.233 7 C -0.474 4.474 8 H 0.103 0.897 9 C 0.118 3.882 10 C -0.285 4.285 11 C -0.052 4.052 12 C -0.291 4.291 13 C 0.133 3.867 14 N -0.159 5.159 15 C 0.168 3.832 16 N -0.281 5.281 17 C -0.022 4.022 18 O -0.239 6.239 19 S 0.615 5.385 20 C -0.531 4.531 21 C 0.294 3.706 22 O -0.275 6.275 23 N -0.306 5.306 24 C 0.181 3.819 25 N -0.360 5.360 26 N -0.280 5.280 27 H 0.105 0.895 28 H 0.147 0.853 29 H 0.177 0.823 30 H 0.145 0.855 31 H 0.308 0.692 32 H 0.306 0.694 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 23.528 10.069 0.840 25.606 hybrid contribution -0.356 -0.400 -0.044 0.538 sum 23.172 9.668 0.796 25.121 Atomic orbital electron populations 1.69627 1.08881 1.31661 1.35055 1.26655 0.95206 1.04684 0.88854 0.84014 0.74083 0.74454 0.79926 1.18143 1.27132 1.23283 1.19497 0.90710 0.95500 1.41690 0.89701 1.18568 0.93401 0.87508 0.88743 1.21904 0.95153 0.99091 1.12377 1.21266 0.93791 0.97205 0.92950 1.21053 0.99690 0.92469 1.15881 1.18060 0.89278 0.84392 0.94998 1.41713 1.22708 1.22822 1.28683 1.17480 0.87206 0.88895 0.89617 1.65287 1.10105 1.38022 1.14650 1.24404 0.90509 0.96015 0.91319 1.84811 1.46182 1.65715 1.27151 1.83413 1.16798 1.21378 1.16898 1.24523 1.12342 1.04667 1.11583 1.18656 0.83392 0.86764 0.81745 1.84553 1.63089 1.14175 1.65702 1.69597 1.14414 1.14093 1.32487 1.19238 0.91423 0.84617 0.86613 1.70222 1.10211 1.37373 1.18151 1.65896 1.10199 1.29780 1.22102 0.89538 0.85319 0.82309 0.85494 0.69247 0.69364 0.82808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.19 13.92 21.84 0.30 -47.89 16 2 C 0.07 3.87 5.52 85.29 0.47 4.34 16 3 Si 1.04 56.77 25.43 68.60 1.74 58.52 16 4 H -0.26 -14.25 5.62 99.48 0.56 -13.69 16 5 H -0.34 -17.71 7.11 99.48 0.71 -17.00 16 6 H -0.30 -17.68 6.56 99.48 0.65 -17.03 16 7 C -0.44 -26.11 9.68 23.47 0.23 -25.88 16 8 H 0.08 5.06 8.06 -2.91 -0.02 5.03 16 9 C 0.24 13.45 6.29 40.21 0.25 13.70 16 10 C -0.26 -12.26 9.83 22.87 0.22 -12.04 16 11 C -0.03 -1.11 10.15 22.40 0.23 -0.89 16 12 C -0.27 -11.22 9.06 22.72 0.21 -11.02 16 13 C 0.36 17.72 6.13 133.20 0.82 18.54 16 14 N -0.45 -19.82 2.93 -354.55 -1.04 -20.86 16 15 C 0.41 14.02 7.14 132.75 0.95 14.97 16 16 N -0.55 -16.43 9.54 -313.25 -2.99 -19.42 16 17 C 0.29 5.42 8.57 130.60 1.12 6.54 16 18 O -0.43 -4.91 13.62 -85.18 -1.16 -6.07 16 19 S 0.37 4.75 23.19 -56.49 -1.31 3.44 16 20 C -0.40 -10.14 6.51 22.97 0.15 -9.99 16 21 C 0.51 13.53 7.80 85.26 0.67 14.19 16 22 O -0.46 -7.63 13.55 -85.51 -1.16 -8.79 16 23 N -0.57 -20.67 10.45 -311.14 -3.25 -23.92 16 24 C 0.55 24.23 8.32 261.70 2.18 26.41 16 25 N -0.72 -35.27 11.15 -60.04 -0.67 -35.94 16 26 N -0.56 -30.86 3.84 -186.29 -0.71 -31.57 16 27 H 0.29 15.76 8.29 -92.71 -0.77 14.99 16 28 H 0.13 5.46 8.06 -2.91 -0.02 5.43 16 29 H 0.16 4.74 8.06 -2.91 -0.02 4.71 16 30 H 0.13 4.70 7.68 -2.91 -0.02 4.68 16 31 H 0.44 -0.11 9.06 -74.05 -0.67 -0.78 16 32 H 0.44 2.34 9.06 -74.05 -0.67 1.67 16 33 H 0.35 15.88 8.89 -92.71 -0.82 15.05 16 Total: -1.00 -86.70 309.10 -3.87 -90.57 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -1.11 Total: 3.07 kcal Atomic # 6 Polarization: 31.38 SS G_CDS: 7.49 Total: 38.87 kcal Atomic # 7 Polarization: -171.24 SS G_CDS: -8.36 Total: -179.61 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -2.32 Total: -14.86 kcal Atomic # 14 Polarization: 56.77 SS G_CDS: 1.74 Total: 58.52 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.31 Total: 3.44 kcal Total: -86.70 -3.87 -90.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163041975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.106 kcal (2) G-P(sol) polarization free energy of solvation -86.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds