Wall clock time and date at job start Tue Mar 31 2020 16:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86799 * 120.00231 * 2 1 4 4 H 1.48495 * 109.47207 * 239.99637 * 3 2 1 5 5 H 1.48496 * 109.47205 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46879 * 119.99562 * 3 2 1 7 7 C 1.40020 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.41446 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.40450 * 119.80010 * 180.27130 * 9 7 2 11 11 C 1.38950 * 118.88268 * 180.24476 * 10 9 7 12 12 N 1.39667 * 120.77428 * 179.76226 * 11 10 9 13 13 C 1.39536 * 120.08412 * 114.69854 * 12 11 10 14 14 N 1.32395 * 129.79694 * 0.35242 * 13 12 11 15 15 C 1.29443 * 117.87540 * 180.21024 * 14 13 12 16 16 O 1.35234 * 124.56463 * 179.77088 * 15 14 13 17 17 S 1.70771 * 110.86598 * 359.49781 * 15 14 13 18 18 C 1.38633 * 117.64483 * 180.02562 * 13 12 11 19 19 C 1.40716 * 119.89836 * 359.97379 * 18 13 12 20 20 O 1.35265 * 119.85586 * 180.02562 * 19 18 13 21 21 N 1.32151 * 120.28909 * 0.03027 * 19 18 13 22 22 C 1.33889 * 121.06982 * 359.97039 * 21 19 18 23 23 N 1.31512 * 119.37145 * 180.02562 * 22 21 19 24 24 C 1.39654 * 118.44569 * 359.48703 * 11 10 9 25 25 C 1.38500 * 119.47961 * 0.25119 * 24 11 10 26 26 N 1.31510 * 121.09680 * 0.02562 * 25 24 11 27 27 H 0.97003 * 119.99101 * 0.02562 * 1 2 3 28 28 H 1.07992 * 120.56061 * 359.97438 * 10 9 7 29 29 H 0.96700 * 114.00057 * 179.72353 * 16 15 14 30 30 H 0.96697 * 114.00390 * 90.00450 * 20 19 18 31 31 H 0.97005 * 119.99418 * 0.02562 * 23 22 21 32 32 H 1.08000 * 120.26143 * 180.27295 * 24 11 10 33 33 H 1.07994 * 119.45507 * 179.97438 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0954 1.6963 -1.2124 5 1 1.2767 2.7464 0.0006 6 1 3.0953 1.6963 1.2126 7 6 2.0076 -1.2126 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3003 -2.4376 0.0005 10 6 2.0068 -3.6515 0.0069 11 6 1.2929 -4.8435 0.0015 12 7 1.9552 -6.0732 0.0025 13 6 1.8377 -6.9301 1.0975 14 7 1.1542 -6.7801 2.2214 15 6 1.2118 -7.7322 3.0964 16 8 0.5729 -7.7187 4.2882 17 16 2.1971 -9.0111 2.5398 18 6 2.5169 -8.1375 1.0452 19 6 3.2892 -8.4594 -0.0862 20 8 3.9511 -9.6379 -0.1365 21 7 3.3706 -7.6153 -1.0998 22 6 2.7251 -6.4426 -1.0759 23 7 2.8291 -5.6280 -2.1031 24 6 -0.1024 -4.7833 0.0011 25 6 -0.7313 -3.5494 0.0006 26 7 -0.0365 -2.4328 0.0001 27 1 -0.4849 0.8401 -0.0004 28 1 3.0867 -3.6583 0.0113 29 1 0.7189 -8.5118 4.8218 30 1 3.4388 -10.3606 -0.5242 31 1 3.3693 -5.8794 -2.8686 32 1 -0.6863 -5.6918 0.0015 33 1 -1.8103 -3.5033 -0.0001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163048878.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:49 Heat of formation + Delta-G solvation = 95.948123 kcal Electronic energy + Delta-G solvation = -25002.745363 eV Core-core repulsion = 21158.454642 eV Total energy + Delta-G solvation = -3844.290721 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58753 -39.60069 -38.64328 -37.85146 -37.24946 -34.54333 -33.30943 -32.74552 -30.02705 -29.82776 -28.72146 -25.96174 -25.54439 -24.04128 -22.34712 -21.79218 -21.38382 -20.48434 -18.97222 -18.54992 -18.18769 -17.52677 -16.75888 -16.48924 -15.79463 -15.64223 -15.15684 -15.03841 -14.68361 -14.33298 -14.18696 -13.71821 -13.22712 -12.63485 -12.53189 -12.36191 -12.20292 -12.04200 -11.39044 -11.24561 -11.13446 -10.73308 -10.52556 -10.36533 -10.05929 -9.91711 -9.66391 -9.39976 -9.38314 -9.28942 -8.24746 -7.65647 -7.63794 -7.43283 -6.40929 -4.51517 -0.17739 0.43900 1.02628 1.17078 1.89686 2.20928 2.71089 2.79092 2.96034 3.10586 3.13514 3.18336 3.21032 3.70066 3.97027 4.22060 4.37863 4.75152 4.98717 5.26131 5.67340 5.82182 6.04024 6.06894 6.30700 6.40927 6.60383 6.72958 6.86335 7.05426 7.10585 7.22512 7.39467 7.47697 7.57305 7.82386 7.99592 8.22214 8.62390 8.66805 8.89782 10.08809 10.32176 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.016379 B = 0.003744 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.123299 B = 7477.313562 C = 8352.759639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.425 4.425 8 H 0.083 0.917 9 C 0.264 3.736 10 C -0.223 4.223 11 C 0.179 3.821 12 N -0.430 5.430 13 C 0.460 3.540 14 N -0.502 5.502 15 C 0.329 3.671 16 O -0.408 6.408 17 S 0.153 5.847 18 C -0.399 4.399 19 C 0.495 3.505 20 O -0.476 6.476 21 N -0.554 5.554 22 C 0.557 3.443 23 N -0.705 5.705 24 C -0.295 4.295 25 C 0.136 3.864 26 N -0.478 5.478 27 H 0.274 0.726 28 H 0.100 0.900 29 H 0.422 0.578 30 H 0.412 0.588 31 H 0.353 0.647 32 H 0.092 0.908 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 -19.703 7.230 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.156 4.156 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.456 4.456 8 H 0.102 0.898 9 C 0.138 3.862 10 C -0.248 4.248 11 C 0.084 3.916 12 N -0.131 5.131 13 C 0.219 3.781 14 N -0.234 5.234 15 C 0.009 3.991 16 O -0.206 6.206 17 S 0.397 5.603 18 C -0.530 4.530 19 C 0.279 3.721 20 O -0.284 6.284 21 N -0.287 5.287 22 C 0.188 3.812 23 N -0.340 5.340 24 C -0.320 4.320 25 C -0.030 4.030 26 N -0.190 5.190 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.278 0.722 30 H 0.273 0.727 31 H 0.172 0.828 32 H 0.110 0.890 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.911 -17.286 6.806 18.676 hybrid contribution 0.763 -1.044 -0.133 1.300 sum 2.673 -18.330 6.673 19.689 Atomic orbital electron populations 1.70128 1.07160 1.27951 1.28213 1.26050 0.94929 1.01039 0.93600 0.86366 0.80081 0.80326 0.79939 1.18853 1.20150 1.18946 1.19563 0.94259 0.89224 1.42585 0.89841 1.18436 0.88112 0.91078 0.88536 1.21629 0.98648 0.91536 1.12940 1.17369 0.90923 0.81100 1.02209 1.41835 1.43645 1.16265 1.11367 1.17472 0.88447 0.86213 0.85938 1.64577 1.27116 1.29775 1.01977 1.24195 0.92783 0.92230 0.89899 1.84767 1.66000 1.46036 1.23824 1.83848 1.46247 1.19792 1.10461 1.23669 1.20833 1.03224 1.05242 1.18544 0.81776 0.86478 0.85303 1.84586 1.42826 1.17104 1.83890 1.69611 1.26237 1.05346 1.27514 1.19245 0.87948 0.85947 0.88062 1.70216 1.29428 1.30594 1.03766 1.21099 0.91887 0.98502 1.20472 1.22361 0.98861 0.87798 0.93984 1.68732 1.07125 1.26493 1.16677 0.91483 0.88193 0.72239 0.72726 0.82810 0.88971 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.28 11.46 55.55 0.64 -18.65 16 2 C 0.07 1.80 5.50 -17.34 -0.10 1.71 16 3 Si 0.91 19.05 29.56 -169.99 -5.02 14.02 16 4 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.43 -11.76 9.14 -37.69 -0.34 -12.10 16 8 H 0.08 2.18 7.85 -52.49 -0.41 1.77 16 9 C 0.26 7.50 6.55 -85.01 -0.56 6.94 16 10 C -0.22 -5.90 9.10 -38.49 -0.35 -6.25 16 11 C 0.18 4.36 4.73 -83.50 -0.40 3.96 16 12 N -0.43 -9.11 2.85 -61.54 -0.18 -9.28 16 13 C 0.46 8.25 7.36 -154.69 -1.14 7.12 16 14 N -0.50 -8.61 10.35 -14.18 -0.15 -8.76 16 15 C 0.33 3.78 8.63 51.76 0.45 4.23 16 16 O -0.41 -3.32 13.62 -17.40 -0.24 -3.56 16 17 S 0.15 1.29 23.09 -107.50 -2.48 -1.19 16 18 C -0.40 -5.55 6.51 -38.50 -0.25 -5.80 16 19 C 0.50 6.92 7.80 -16.48 -0.13 6.79 16 20 O -0.48 -4.71 13.55 -17.49 -0.24 -4.95 16 21 N -0.55 -9.59 10.45 -13.94 -0.15 -9.73 16 22 C 0.56 11.38 8.30 -323.46 -2.68 8.70 16 23 N -0.70 -15.23 12.84 29.66 0.38 -14.85 16 24 C -0.29 -7.07 9.88 -38.96 -0.39 -7.46 16 25 C 0.14 3.42 11.17 -17.59 -0.20 3.22 16 26 N -0.48 -13.52 7.86 -11.19 -0.09 -13.61 16 27 H 0.27 6.70 8.29 -40.82 -0.34 6.36 16 28 H 0.10 2.62 8.06 -52.49 -0.42 2.20 16 29 H 0.42 0.28 8.98 45.56 0.41 0.69 16 30 H 0.41 1.75 9.06 45.56 0.41 2.16 16 31 H 0.35 6.76 8.89 -40.82 -0.36 6.40 16 32 H 0.09 2.05 8.06 -52.49 -0.42 1.62 16 33 H 0.12 2.74 8.06 -52.49 -0.42 2.32 16 LS Contribution 318.89 15.07 4.81 4.81 Total: -1.00 -37.37 318.89 -9.15 -46.52 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -0.36 Total: 8.18 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: -6.08 Total: 11.05 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: 0.46 Total: -74.88 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.47 Total: -8.50 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.48 Total: -1.19 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -37.37 -9.15 -46.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163048878.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.467 kcal (2) G-P(sol) polarization free energy of solvation -37.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds