Wall clock time and date at job start Tue Mar 31 2020 16:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86799 * 120.00231 * 2 1 4 4 H 1.48495 * 109.47207 * 239.99637 * 3 2 1 5 5 H 1.48496 * 109.47205 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46879 * 119.99562 * 3 2 1 7 7 C 1.40020 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.41446 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.40450 * 119.80010 * 180.27130 * 9 7 2 11 11 C 1.38950 * 118.88268 * 180.24476 * 10 9 7 12 12 N 1.39667 * 120.77428 * 179.76226 * 11 10 9 13 13 C 1.39536 * 120.08412 * 114.69854 * 12 11 10 14 14 N 1.32395 * 129.79694 * 0.35242 * 13 12 11 15 15 C 1.29443 * 117.87540 * 180.21024 * 14 13 12 16 16 O 1.35234 * 124.56463 * 179.77088 * 15 14 13 17 17 S 1.70771 * 110.86598 * 359.49781 * 15 14 13 18 18 C 1.38633 * 117.64483 * 180.02562 * 13 12 11 19 19 C 1.40716 * 119.89836 * 359.97379 * 18 13 12 20 20 O 1.35265 * 119.85586 * 180.02562 * 19 18 13 21 21 N 1.32151 * 120.28909 * 0.03027 * 19 18 13 22 22 C 1.33889 * 121.06982 * 359.97039 * 21 19 18 23 23 N 1.31512 * 119.37145 * 180.02562 * 22 21 19 24 24 C 1.39654 * 118.44569 * 359.48703 * 11 10 9 25 25 C 1.38500 * 119.47961 * 0.25119 * 24 11 10 26 26 N 1.31510 * 121.09680 * 0.02562 * 25 24 11 27 27 H 0.97003 * 119.99101 * 0.02562 * 1 2 3 28 28 H 1.07992 * 120.56061 * 359.97438 * 10 9 7 29 29 H 0.96700 * 114.00057 * 179.72353 * 16 15 14 30 30 H 0.96697 * 114.00390 * 90.00450 * 20 19 18 31 31 H 0.97005 * 119.99418 * 0.02562 * 23 22 21 32 32 H 1.08000 * 120.26143 * 180.27295 * 24 11 10 33 33 H 1.07994 * 119.45507 * 179.97438 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0954 1.6963 -1.2124 5 1 1.2767 2.7464 0.0006 6 1 3.0953 1.6963 1.2126 7 6 2.0076 -1.2126 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3003 -2.4376 0.0005 10 6 2.0068 -3.6515 0.0069 11 6 1.2929 -4.8435 0.0015 12 7 1.9552 -6.0732 0.0025 13 6 1.8377 -6.9301 1.0975 14 7 1.1542 -6.7801 2.2214 15 6 1.2118 -7.7322 3.0964 16 8 0.5729 -7.7187 4.2882 17 16 2.1971 -9.0111 2.5398 18 6 2.5169 -8.1375 1.0452 19 6 3.2892 -8.4594 -0.0862 20 8 3.9511 -9.6379 -0.1365 21 7 3.3706 -7.6153 -1.0998 22 6 2.7251 -6.4426 -1.0759 23 7 2.8291 -5.6280 -2.1031 24 6 -0.1024 -4.7833 0.0011 25 6 -0.7313 -3.5494 0.0006 26 7 -0.0365 -2.4328 0.0001 27 1 -0.4849 0.8401 -0.0004 28 1 3.0867 -3.6583 0.0113 29 1 0.7189 -8.5118 4.8218 30 1 3.4388 -10.3606 -0.5242 31 1 3.3693 -5.8794 -2.8686 32 1 -0.6863 -5.6918 0.0015 33 1 -1.8103 -3.5033 -0.0001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163048878.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:49 Heat of formation + Delta-G solvation = 62.621292 kcal Electronic energy + Delta-G solvation = -25004.190523 eV Core-core repulsion = 21158.454642 eV Total energy + Delta-G solvation = -3845.735881 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.84585 -40.59600 -40.19159 -39.02730 -38.41723 -36.09353 -35.14919 -34.05823 -32.02261 -31.46042 -30.11834 -27.78046 -26.80058 -25.38589 -23.75808 -23.29583 -23.17648 -21.52258 -20.23629 -19.97070 -19.35185 -18.53346 -18.29771 -17.78244 -17.23180 -16.90398 -16.66653 -16.41678 -16.24546 -16.16925 -15.16887 -15.07674 -14.88215 -14.30689 -14.15161 -13.69225 -13.45270 -13.14627 -13.07029 -12.95837 -12.83550 -12.49389 -12.15727 -11.76684 -11.54739 -11.24599 -10.93780 -10.92539 -10.84899 -10.32692 -10.06996 -9.67015 -9.65082 -8.82751 -8.35435 -6.58106 -1.24447 -0.41521 -0.01415 0.04310 0.78999 0.81757 0.84665 1.09600 1.39075 1.52213 1.52887 1.96012 2.11433 2.22169 2.36341 2.78136 3.05693 3.29055 3.80980 3.86255 4.11342 4.23692 4.32212 4.46488 4.64955 4.76677 4.93032 5.12640 5.19083 5.39433 5.50641 5.59731 5.75519 6.08270 6.18711 6.34801 6.45899 6.56580 6.65261 6.87076 7.25424 8.07544 8.41061 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.016379 B = 0.003744 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.123299 B = 7477.313562 C = 8352.759639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.026 3.974 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.258 1.258 7 C -0.463 4.463 8 H 0.083 0.917 9 C 0.237 3.763 10 C -0.248 4.248 11 C 0.198 3.802 12 N -0.453 5.453 13 C 0.432 3.568 14 N -0.570 5.570 15 C 0.322 3.678 16 O -0.410 6.410 17 S 0.317 5.683 18 C -0.416 4.416 19 C 0.517 3.483 20 O -0.465 6.465 21 N -0.578 5.578 22 C 0.562 3.438 23 N -0.756 5.756 24 C -0.291 4.291 25 C 0.124 3.876 26 N -0.509 5.509 27 H 0.283 0.717 28 H 0.087 0.913 29 H 0.451 0.549 30 H 0.440 0.560 31 H 0.357 0.643 32 H 0.110 0.890 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 -22.783 9.306 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.182 1.182 7 C -0.494 4.494 8 H 0.101 0.899 9 C 0.112 3.888 10 C -0.273 4.273 11 C 0.102 3.898 12 N -0.157 5.157 13 C 0.192 3.808 14 N -0.305 5.305 15 C 0.005 3.995 16 O -0.214 6.214 17 S 0.563 5.437 18 C -0.546 4.546 19 C 0.303 3.697 20 O -0.277 6.277 21 N -0.313 5.313 22 C 0.194 3.806 23 N -0.394 5.394 24 C -0.316 4.316 25 C -0.041 4.041 26 N -0.222 5.222 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.314 0.686 30 H 0.307 0.693 31 H 0.176 0.824 32 H 0.128 0.872 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.431 -20.552 8.998 22.567 hybrid contribution 0.592 -0.581 -0.532 0.985 sum 3.023 -21.133 8.466 22.965 Atomic orbital electron populations 1.70205 1.08795 1.29494 1.28578 1.26983 0.95827 1.04410 0.92418 0.85164 0.78680 0.75228 0.80022 1.18526 1.18521 1.18245 1.19898 0.94560 0.90421 1.44489 0.89880 1.18809 0.88731 0.92190 0.89097 1.21532 0.97995 0.92404 1.15376 1.17324 0.91079 0.82257 0.99161 1.41793 1.44699 1.15987 1.13252 1.17573 0.90379 0.86965 0.85887 1.64466 1.29512 1.33475 1.03031 1.24382 0.92634 0.92608 0.89841 1.84773 1.65272 1.48504 1.22823 1.83291 1.41695 1.14348 1.04405 1.24215 1.19372 1.03006 1.08040 1.18615 0.79853 0.86956 0.84288 1.84559 1.42701 1.16367 1.84069 1.69607 1.27572 1.04925 1.29177 1.19322 0.87209 0.86640 0.87462 1.70174 1.31722 1.32450 1.05083 1.21284 0.92156 0.98745 1.19372 1.22843 1.00099 0.87761 0.93399 1.68710 1.07282 1.27992 1.18225 0.90663 0.89513 0.68631 0.69302 0.82384 0.87180 0.83181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.87 11.46 21.84 0.25 -41.62 16 2 C 0.03 1.39 5.50 85.29 0.47 1.86 16 3 Si 0.99 40.00 29.56 68.60 2.03 42.03 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 5 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.46 -27.08 9.14 23.49 0.21 -26.86 16 8 H 0.08 4.64 7.85 -2.91 -0.02 4.61 16 9 C 0.24 14.33 6.55 40.19 0.26 14.59 16 10 C -0.25 -14.09 9.10 22.98 0.21 -13.88 16 11 C 0.20 10.13 4.73 38.41 0.18 10.31 16 12 N -0.45 -19.82 2.85 -348.62 -0.99 -20.82 16 13 C 0.43 15.30 7.36 132.76 0.98 16.28 16 14 N -0.57 -19.05 10.35 -313.27 -3.24 -22.29 16 15 C 0.32 6.38 8.63 130.59 1.13 7.51 16 16 O -0.41 -5.24 13.62 -85.17 -1.16 -6.40 16 17 S 0.32 3.68 23.09 -56.49 -1.30 2.38 16 18 C -0.42 -10.44 6.51 22.97 0.15 -10.29 16 19 C 0.52 13.17 7.80 85.25 0.67 13.84 16 20 O -0.46 -7.20 13.55 -85.49 -1.16 -8.35 16 21 N -0.58 -19.83 10.45 -311.18 -3.25 -23.08 16 22 C 0.56 23.79 8.30 261.71 2.17 25.96 16 23 N -0.76 -34.75 12.84 -60.06 -0.77 -35.52 16 24 C -0.29 -14.43 9.88 22.67 0.22 -14.21 16 25 C 0.12 6.48 11.17 84.80 0.95 7.43 16 26 N -0.51 -30.26 7.86 -189.33 -1.49 -31.74 16 27 H 0.28 14.14 8.29 -92.71 -0.77 13.37 16 28 H 0.09 4.97 8.06 -2.91 -0.02 4.94 16 29 H 0.45 -1.63 8.98 -74.06 -0.66 -2.30 16 30 H 0.44 1.50 9.06 -74.06 -0.67 0.83 16 31 H 0.36 14.68 8.89 -92.70 -0.82 13.86 16 32 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 33 H 0.15 6.76 8.06 -2.91 -0.02 6.74 16 Total: -1.00 -89.57 318.89 -4.40 -93.97 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -0.90 Total: 18.93 kcal Atomic # 6 Polarization: 24.93 SS G_CDS: 7.60 Total: 32.53 kcal Atomic # 7 Polarization: -165.58 SS G_CDS: -9.50 Total: -175.08 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -2.32 Total: -14.76 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -1.30 Total: 2.38 kcal Total: -89.57 -4.40 -93.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163048878.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.591 kcal (2) G-P(sol) polarization free energy of solvation -89.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds