Wall clock time and date at job start Tue Mar 31 2020 17:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45199 * 109.47527 * 2 1 4 4 C 1.34819 * 117.00265 * 180.02562 * 3 2 1 5 5 O 1.21579 * 120.00146 * 359.97438 * 4 3 2 6 6 C 1.46921 * 120.00075 * 180.02562 * 4 3 2 7 7 C 1.40263 * 120.93987 * 85.64737 * 6 4 3 8 8 Cl 1.73601 * 120.47553 * 0.02562 * 7 6 4 9 9 N 1.32105 * 119.04352 * 179.74198 * 7 6 4 10 10 C 1.32833 * 121.11245 * 0.57299 * 9 7 6 11 11 S 1.76202 * 118.95775 * 179.70351 * 10 9 7 12 12 C 1.81000 * 99.99861 * 359.97438 * 11 10 9 13 13 N 1.32529 * 122.08786 * 359.67295 * 10 9 7 14 14 C 1.32823 * 120.81962 * 0.02937 * 13 10 9 15 15 N 1.37940 * 120.59802 * 179.97438 * 14 13 10 16 16 C 1.46504 * 119.99958 * 83.70064 * 15 14 13 17 17 C 1.36929 * 120.00318 * 263.70754 * 15 14 13 18 18 H 1.07996 * 119.99775 * 189.16460 * 17 15 14 19 19 C 1.38894 * 119.99456 * 9.15798 * 17 15 14 20 20 N 1.31492 * 120.00656 * 11.52172 * 19 17 15 21 21 Si 1.86808 * 119.99572 * 191.51702 * 19 17 15 22 22 H 1.48504 * 109.46881 * 60.00334 * 21 19 17 23 23 H 1.48500 * 109.46950 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47224 * 300.00041 * 21 19 17 25 25 H 1.08999 * 109.47437 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47209 * 300.00719 * 1 2 3 27 27 H 1.09008 * 109.47303 * 59.99883 * 1 2 3 28 28 H 1.08998 * 109.47127 * 239.99754 * 2 1 3 29 29 H 1.09003 * 109.47238 * 119.99676 * 2 1 3 30 30 H 1.09004 * 109.47373 * 179.97438 * 12 11 10 31 31 H 1.09003 * 109.47115 * 300.00473 * 12 11 10 32 32 H 1.09004 * 109.47277 * 59.99852 * 12 11 10 33 33 H 1.09001 * 109.46734 * 355.04726 * 16 15 14 34 34 H 1.08992 * 109.47146 * 115.05203 * 16 15 14 35 35 H 1.09000 * 109.47248 * 235.05176 * 16 15 14 36 36 H 0.96994 * 119.99971 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3506 1.5455 -0.0005 5 8 4.0912 0.5813 -0.0005 6 6 3.9122 2.9032 0.0000 7 6 4.1040 3.6037 1.1999 8 17 3.6810 2.8793 2.7197 9 7 4.6166 4.8205 1.1572 10 6 4.9395 5.3891 0.0009 11 16 5.6120 7.0177 0.0095 12 6 5.6124 7.3482 1.7891 13 7 4.7724 4.7701 -1.1589 14 6 4.2687 3.5421 -1.2085 15 7 4.0963 2.9022 -2.4183 16 6 5.2184 2.1932 -3.0384 17 6 2.8765 2.9297 -3.0397 18 1 2.6979 2.3106 -3.9064 19 6 1.8688 3.7538 -2.5552 20 7 2.1447 4.6682 -1.6515 21 14 0.1214 3.5630 -3.1877 22 1 -0.3645 2.1910 -2.8933 23 1 -0.7583 4.5546 -2.5182 24 1 0.0981 3.7923 -4.6546 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 6.0111 8.3458 1.9734 31 1 4.5929 7.2878 2.1701 32 1 6.2338 6.6097 2.2957 33 1 6.1205 2.3541 -2.4482 34 1 4.9964 1.1270 -3.0796 35 1 5.3733 2.5714 -4.0490 36 1 1.4411 5.2439 -1.3136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:05 Heat of formation + Delta-G solvation = -13.532624 kcal Electronic energy + Delta-G solvation = -25193.385484 eV Core-core repulsion = 21445.454816 eV Total energy + Delta-G solvation = -3747.930669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.36930 -39.19916 -36.66337 -36.12801 -35.82798 -32.37213 -31.81163 -31.48793 -30.70588 -28.64221 -26.26236 -25.41003 -24.50720 -22.80597 -21.71619 -20.82761 -18.64898 -17.63289 -17.41734 -16.65335 -16.22312 -15.63978 -15.39120 -14.93159 -14.41137 -14.01404 -13.87193 -13.64901 -13.27586 -13.23234 -13.09684 -12.77878 -12.52953 -12.37379 -11.81101 -11.71249 -11.49898 -11.44480 -11.22113 -11.19667 -10.97031 -10.89938 -10.58626 -10.29206 -10.23272 -10.00239 -9.77920 -9.54786 -9.30458 -9.09749 -8.65410 -7.53189 -7.31145 -6.18392 -3.65982 1.25983 1.62266 1.81037 1.99077 2.59659 2.78308 3.23342 3.27272 3.30120 3.34970 4.09255 4.37760 4.53642 5.12004 5.18541 5.25184 5.28581 5.32474 5.42024 5.45425 5.51011 5.57457 5.92904 5.97233 6.02608 6.04804 6.08816 6.26777 6.41567 6.48572 6.49923 6.93456 7.40662 7.49050 7.85449 8.36074 8.60670 8.86335 9.32212 9.70284 10.89526 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.006790 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.712698 B = 4122.797223 C = 5211.991841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.330 6.330 4 C 0.560 3.440 5 O -0.513 6.513 6 C -0.220 4.220 7 C 0.273 3.727 8 Cl -0.036 7.036 9 N -0.552 5.552 10 C 0.343 3.657 11 S -0.008 6.008 12 C -0.143 4.143 13 N -0.479 5.479 14 C 0.597 3.403 15 N -0.552 5.552 16 C 0.127 3.873 17 C -0.278 4.278 18 H 0.095 0.905 19 C 0.016 3.984 20 N -0.895 5.895 21 Si 0.926 3.074 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.280 1.280 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.037 0.963 35 H 0.042 0.958 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 -1.806 6.112 6.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.246 6.246 4 C 0.403 3.597 5 O -0.402 6.402 6 C -0.236 4.236 7 C 0.096 3.904 8 Cl -0.007 7.007 9 N -0.275 5.275 10 C -0.035 4.035 11 S 0.225 5.775 12 C -0.313 4.313 13 N -0.200 5.200 14 C 0.355 3.645 15 N -0.271 5.271 16 C -0.017 4.017 17 C -0.405 4.405 18 H 0.113 0.887 19 C -0.185 4.185 20 N -0.537 5.537 21 Si 0.754 3.246 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.206 1.206 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.801 -0.382 5.324 6.028 hybrid contribution -1.994 -1.685 0.901 2.761 sum 0.807 -2.066 6.225 6.608 Atomic orbital electron populations 1.21786 0.93181 1.02241 1.03667 1.22918 0.95104 0.81205 1.01964 1.86770 1.23694 1.30858 1.83256 1.20169 0.80596 0.88601 0.70344 1.90777 1.60738 1.42141 1.46544 1.21034 1.11969 0.95713 0.94891 1.21595 0.93441 0.89653 0.85694 1.98380 1.90900 1.80488 1.30971 1.67857 1.19666 1.10404 1.29531 1.24421 0.94580 0.99102 0.85368 1.85632 1.76015 1.07404 1.08495 1.23489 1.06909 1.04904 0.95961 1.68640 1.17195 1.08416 1.25700 1.17301 0.78197 0.83827 0.85175 1.41326 1.10084 1.57715 1.17942 1.21177 0.88104 0.95370 0.97043 1.19327 0.86126 1.22723 1.12288 0.88705 1.24933 0.99795 0.95265 0.98467 1.69171 1.32325 1.20145 1.32018 0.85982 0.82591 0.77887 0.78143 1.20181 1.21181 1.20602 0.90725 0.91778 0.91271 0.91303 0.91897 0.88304 0.89287 0.89439 0.93710 0.94434 0.93963 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.29 37.15 0.38 -1.74 16 2 C 0.06 1.06 6.20 37.15 0.23 1.29 16 3 O -0.33 -7.23 10.23 -40.81 -0.42 -7.64 16 4 C 0.56 12.92 6.09 34.25 0.21 13.13 16 5 O -0.51 -11.95 16.90 -19.33 -0.33 -12.27 16 6 C -0.22 -5.26 5.55 -104.47 -0.58 -5.84 16 7 C 0.27 5.98 7.38 -16.67 -0.12 5.86 16 8 Cl -0.04 -0.66 28.33 -51.86 -1.47 -2.13 16 9 N -0.55 -11.73 9.07 -10.19 -0.09 -11.82 16 10 C 0.34 7.52 7.85 -90.62 -0.71 6.81 16 11 S -0.01 -0.14 22.89 -107.50 -2.46 -2.60 16 12 C -0.14 -1.87 9.61 101.05 0.97 -0.90 16 13 N -0.48 -11.84 9.61 -12.36 -0.12 -11.96 16 14 C 0.60 14.95 3.53 -154.86 -0.55 14.40 16 15 N -0.55 -13.73 2.50 -121.94 -0.31 -14.03 16 16 C 0.13 2.62 10.70 59.85 0.64 3.26 16 17 C -0.28 -7.20 9.78 -15.03 -0.15 -7.34 16 18 H 0.10 2.34 7.86 -52.49 -0.41 1.93 16 19 C 0.02 0.41 5.34 -17.45 -0.09 0.32 16 20 N -0.89 -24.57 10.21 55.49 0.57 -24.00 16 21 Si 0.93 20.98 29.57 -169.99 -5.03 15.96 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 0.97 8.14 -51.91 -0.42 0.55 16 31 H 0.09 1.24 8.11 -51.91 -0.42 0.82 16 32 H 0.09 1.13 8.11 -51.91 -0.42 0.71 16 33 H 0.04 0.87 7.90 -51.93 -0.41 0.46 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -30.38 348.35 -8.35 -38.73 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -4.18 Total: -2.73 kcal Atomic # 6 Polarization: 29.01 SS G_CDS: 0.23 Total: 29.24 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.05 Total: -61.81 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.74 Total: -19.92 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.96 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -2.46 Total: -2.60 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.47 Total: -2.13 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.38 -8.35 -38.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.200 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds