Wall clock time and date at job start Tue Mar 31 2020 17:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45199 * 109.47527 * 2 1 4 4 C 1.34819 * 117.00265 * 180.02562 * 3 2 1 5 5 O 1.21579 * 120.00146 * 359.97438 * 4 3 2 6 6 C 1.46921 * 120.00075 * 180.02562 * 4 3 2 7 7 C 1.40263 * 120.93987 * 85.64737 * 6 4 3 8 8 Cl 1.73601 * 120.47553 * 0.02562 * 7 6 4 9 9 N 1.32105 * 119.04352 * 179.74198 * 7 6 4 10 10 C 1.32833 * 121.11245 * 0.57299 * 9 7 6 11 11 S 1.76202 * 118.95775 * 179.70351 * 10 9 7 12 12 C 1.81000 * 99.99861 * 359.97438 * 11 10 9 13 13 N 1.32529 * 122.08786 * 359.67295 * 10 9 7 14 14 C 1.32823 * 120.81962 * 0.02937 * 13 10 9 15 15 N 1.37940 * 120.59802 * 179.97438 * 14 13 10 16 16 C 1.46504 * 119.99958 * 83.70064 * 15 14 13 17 17 C 1.36929 * 120.00318 * 263.70754 * 15 14 13 18 18 H 1.07996 * 119.99775 * 189.16460 * 17 15 14 19 19 C 1.38894 * 119.99456 * 9.15798 * 17 15 14 20 20 N 1.31492 * 120.00656 * 11.52172 * 19 17 15 21 21 Si 1.86808 * 119.99572 * 191.51702 * 19 17 15 22 22 H 1.48504 * 109.46881 * 60.00334 * 21 19 17 23 23 H 1.48500 * 109.46950 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47224 * 300.00041 * 21 19 17 25 25 H 1.08999 * 109.47437 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47209 * 300.00719 * 1 2 3 27 27 H 1.09008 * 109.47303 * 59.99883 * 1 2 3 28 28 H 1.08998 * 109.47127 * 239.99754 * 2 1 3 29 29 H 1.09003 * 109.47238 * 119.99676 * 2 1 3 30 30 H 1.09004 * 109.47373 * 179.97438 * 12 11 10 31 31 H 1.09003 * 109.47115 * 300.00473 * 12 11 10 32 32 H 1.09004 * 109.47277 * 59.99852 * 12 11 10 33 33 H 1.09001 * 109.46734 * 355.04726 * 16 15 14 34 34 H 1.08992 * 109.47146 * 115.05203 * 16 15 14 35 35 H 1.09000 * 109.47248 * 235.05176 * 16 15 14 36 36 H 0.96994 * 119.99971 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3506 1.5455 -0.0005 5 8 4.0912 0.5813 -0.0005 6 6 3.9122 2.9032 0.0000 7 6 4.1040 3.6037 1.1999 8 17 3.6810 2.8793 2.7197 9 7 4.6166 4.8205 1.1572 10 6 4.9395 5.3891 0.0009 11 16 5.6120 7.0177 0.0095 12 6 5.6124 7.3482 1.7891 13 7 4.7724 4.7701 -1.1589 14 6 4.2687 3.5421 -1.2085 15 7 4.0963 2.9022 -2.4183 16 6 5.2184 2.1932 -3.0384 17 6 2.8765 2.9297 -3.0397 18 1 2.6979 2.3106 -3.9064 19 6 1.8688 3.7538 -2.5552 20 7 2.1447 4.6682 -1.6515 21 14 0.1214 3.5630 -3.1877 22 1 -0.3645 2.1910 -2.8933 23 1 -0.7583 4.5546 -2.5182 24 1 0.0981 3.7923 -4.6546 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 6.0111 8.3458 1.9734 31 1 4.5929 7.2878 2.1701 32 1 6.2338 6.6097 2.2957 33 1 6.1205 2.3541 -2.4482 34 1 4.9964 1.1270 -3.0796 35 1 5.3733 2.5714 -4.0490 36 1 1.4411 5.2439 -1.3136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:03 Heat of formation + Delta-G solvation = -30.186672 kcal Electronic energy + Delta-G solvation = -25194.107658 eV Core-core repulsion = 21445.454816 eV Total energy + Delta-G solvation = -3748.652842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.06667 -40.87145 -38.33404 -37.80298 -37.49875 -34.12221 -33.60664 -33.07659 -32.17178 -29.76111 -28.05434 -27.10223 -26.24456 -24.17080 -23.49213 -22.44915 -20.42207 -19.31555 -19.09407 -18.32048 -17.89114 -17.22923 -17.10372 -16.55099 -16.08921 -15.77334 -15.38808 -15.26933 -14.77748 -14.73979 -14.40312 -14.30580 -13.65870 -13.52005 -13.46098 -13.38236 -13.02236 -12.94683 -12.91385 -12.76264 -12.59323 -12.45491 -12.41957 -12.07893 -11.71833 -11.47611 -11.41416 -11.24128 -11.13445 -10.77815 -10.40607 -9.39351 -8.75371 -8.12049 -5.62382 -0.44435 0.08295 0.09310 0.44126 1.04419 1.31942 1.42990 1.46345 1.51880 1.78135 2.30301 2.61678 2.80228 3.19281 3.57582 3.69033 3.83948 3.99993 4.09314 4.24763 4.32438 4.39354 4.39639 4.43747 4.73774 4.79175 4.83595 4.86404 4.89181 5.00899 5.07625 5.37389 5.43317 5.77713 5.94082 6.67849 6.80279 7.00973 7.47350 7.79985 8.92827 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.006790 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.712698 B = 4122.797223 C = 5211.991841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 O -0.348 6.348 4 C 0.563 3.437 5 O -0.526 6.526 6 C -0.247 4.247 7 C 0.266 3.734 8 Cl -0.005 7.005 9 N -0.544 5.544 10 C 0.328 3.672 11 S 0.000 6.000 12 C -0.133 4.133 13 N -0.510 5.510 14 C 0.584 3.416 15 N -0.571 5.571 16 C 0.127 3.873 17 C -0.286 4.286 18 H 0.100 0.900 19 C -0.026 4.026 20 N -0.916 5.916 21 Si 0.976 3.024 22 H -0.265 1.265 23 H -0.295 1.295 24 H -0.274 1.274 25 H 0.113 0.887 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.139 0.861 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -1.848 7.076 7.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.263 6.263 4 C 0.406 3.594 5 O -0.416 6.416 6 C -0.262 4.262 7 C 0.089 3.911 8 Cl 0.023 6.977 9 N -0.266 5.266 10 C -0.048 4.048 11 S 0.233 5.767 12 C -0.302 4.302 13 N -0.231 5.231 14 C 0.343 3.657 15 N -0.291 5.291 16 C -0.016 4.016 17 C -0.413 4.413 18 H 0.118 0.882 19 C -0.224 4.224 20 N -0.559 5.559 21 Si 0.802 3.198 22 H -0.190 1.190 23 H -0.221 1.221 24 H -0.199 1.199 25 H 0.131 0.869 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.158 0.842 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.473 -0.438 6.289 6.772 hybrid contribution -1.811 -1.647 0.713 2.550 sum 0.662 -2.085 7.002 7.336 Atomic orbital electron populations 1.21824 0.90732 1.04551 1.02995 1.23338 0.97026 0.79221 1.02631 1.86752 1.22972 1.33726 1.82876 1.20080 0.80985 0.88235 0.70055 1.90745 1.61073 1.42402 1.47387 1.21137 1.13012 0.96655 0.95421 1.21872 0.92751 0.89791 0.86646 1.98377 1.90557 1.80051 1.28673 1.68020 1.19533 1.10013 1.29072 1.25269 0.93802 1.00789 0.84963 1.85582 1.74522 1.04143 1.12499 1.23637 1.06991 1.07238 0.92360 1.68623 1.18599 1.08754 1.27095 1.17505 0.78616 0.84071 0.85526 1.41552 1.10716 1.58405 1.18451 1.21266 0.87434 0.95440 0.97457 1.19589 0.86828 1.22435 1.12404 0.88213 1.25602 1.02662 0.95216 0.98886 1.69394 1.32363 1.20861 1.33240 0.85203 0.78858 0.77952 0.77764 1.19012 1.22102 1.19937 0.86888 0.91249 0.93043 0.91631 0.90258 0.84244 0.89832 0.88980 0.93201 0.93703 0.92851 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 10.29 71.98 0.74 -3.00 16 2 C 0.05 1.68 6.20 71.98 0.45 2.13 16 3 O -0.35 -15.14 10.23 -57.31 -0.59 -15.73 16 4 C 0.56 26.04 6.09 70.10 0.43 26.47 16 5 O -0.53 -24.51 16.90 19.58 0.33 -24.18 16 6 C -0.25 -11.88 5.55 -19.77 -0.11 -11.99 16 7 C 0.27 11.64 7.38 85.14 0.63 12.26 16 8 Cl -0.01 -0.18 28.33 -2.72 -0.08 -0.26 16 9 N -0.54 -22.86 9.07 -186.14 -1.69 -24.55 16 10 C 0.33 14.35 7.85 180.35 1.42 15.77 16 11 S 0.00 0.00 22.89 -56.49 -1.29 -1.29 16 12 C -0.13 -3.14 9.61 113.37 1.09 -2.05 16 13 N -0.51 -25.52 9.61 -193.01 -1.85 -27.37 16 14 C 0.58 29.67 3.53 133.83 0.47 30.14 16 15 N -0.57 -28.75 2.50 -539.72 -1.35 -30.10 16 16 C 0.13 5.28 10.70 127.77 1.37 6.65 16 17 C -0.29 -14.90 9.78 84.05 0.82 -14.07 16 18 H 0.10 4.93 7.86 -2.91 -0.02 4.90 16 19 C -0.03 -1.39 5.34 84.90 0.45 -0.94 16 20 N -0.92 -51.07 10.21 21.66 0.22 -50.85 16 21 Si 0.98 43.09 29.57 68.60 2.03 45.12 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.08 2.13 8.11 -2.39 -0.02 2.11 16 32 H 0.09 2.14 8.11 -2.39 -0.02 2.12 16 33 H 0.05 1.96 7.90 -2.39 -0.02 1.94 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -66.04 348.35 4.60 -61.45 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.11 Total: 6.41 kcal Atomic # 6 Polarization: 53.61 SS G_CDS: 7.75 Total: 61.37 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -4.67 Total: -132.87 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.26 Total: -39.91 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.29 Total: -1.29 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.08 Total: -0.26 kcal Total: -66.04 4.60 -61.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.261 kcal (2) G-P(sol) polarization free energy of solvation -66.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds