Wall clock time and date at job start Tue Mar 31 2020 16:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86792 * 119.99940 * 2 1 4 4 H 1.48503 * 109.47191 * 240.00037 * 3 2 1 5 5 H 1.48505 * 109.47386 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47349 * 120.00234 * 3 2 1 7 7 C 1.39952 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99665 * 194.16841 * 7 2 1 9 9 C 1.41029 * 120.00105 * 14.17220 * 7 2 1 10 10 C 1.41033 * 120.70237 * 25.20939 * 9 7 2 11 11 C 1.37990 * 118.27213 * 180.25952 * 10 9 7 12 12 C 1.38703 * 119.61330 * 359.48857 * 11 10 9 13 13 N 1.31948 * 121.44388 * 0.27255 * 12 11 10 14 14 C 1.32226 * 121.87322 * 359.97438 * 13 12 11 15 15 N 1.38420 * 119.90117 * 179.97438 * 14 13 12 16 16 C 1.37858 * 119.99598 * 359.97438 * 15 14 13 17 17 N 1.30381 * 120.00488 * 0.02562 * 16 15 14 18 18 S 1.76199 * 119.99774 * 179.97438 * 16 15 14 19 19 C 1.81005 * 100.00154 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47482 * 180.02562 * 19 18 16 21 21 S 1.81397 * 109.47136 * 180.02562 * 20 19 18 22 22 O 1.42096 * 110.54537 * 291.62327 * 21 20 19 23 23 O 1.42098 * 110.54231 * 68.37897 * 21 20 19 24 24 O 1.52203 * 104.44641 * 180.02562 * 21 20 19 25 25 H 0.97004 * 120.00013 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.86727 * 0.02562 * 10 9 7 27 27 H 1.07995 * 120.19657 * 179.76385 * 11 10 9 28 28 H 1.07998 * 119.27781 * 180.25503 * 12 11 10 29 29 H 0.97004 * 120.00156 * 180.02562 * 15 14 13 30 30 H 0.97001 * 120.00459 * 179.97438 * 17 16 15 31 31 H 1.09001 * 109.47190 * 300.00760 * 19 18 16 32 32 H 1.09004 * 109.46512 * 60.00238 * 19 18 16 33 33 H 1.08995 * 109.46993 * 300.00404 * 20 19 18 34 34 H 1.08998 * 109.47053 * 59.99796 * 20 19 18 35 35 H 0.96704 * 113.99565 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2776 2.7465 0.0006 6 1 3.0964 1.6964 1.2125 7 6 2.0084 -1.2120 0.0005 8 1 3.0637 -1.2261 0.2295 9 6 1.3354 -2.4149 -0.2979 10 6 0.1656 -2.4092 -1.0857 11 6 -0.4555 -3.6144 -1.3423 12 6 0.0857 -4.7862 -0.8345 13 7 1.1838 -4.7767 -0.1030 14 6 1.8230 -3.6550 0.1825 15 7 2.9715 -3.6924 0.9541 16 6 3.4470 -4.8979 1.4243 17 7 2.8152 -6.0029 1.1417 18 16 4.9094 -4.9456 2.4061 19 6 5.0265 -6.7263 2.7092 20 6 6.2584 -7.0174 3.5686 21 16 6.3761 -8.8020 3.8717 22 8 5.3177 -9.2356 4.7148 23 8 6.6845 -9.4928 2.6688 24 8 7.6253 -8.9604 4.7268 25 1 -0.4850 0.8401 0.0004 26 1 -0.2359 -1.4853 -1.4748 27 1 -1.3552 -3.6457 -1.9388 28 1 -0.4025 -5.7269 -1.0421 29 1 3.4414 -2.8702 1.1647 30 1 3.1500 -6.8512 1.4722 31 1 4.1316 -7.0658 3.2306 32 1 5.1142 -7.2516 1.7581 33 1 7.1534 -6.6779 3.0475 34 1 6.1703 -6.4921 4.5196 35 1 7.8207 -9.8752 4.9719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168090052.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:16 Heat of formation + Delta-G solvation = -48.271819 kcal Electronic energy + Delta-G solvation = -22733.997804 eV Core-core repulsion = 18986.604437 eV Total energy + Delta-G solvation = -3747.393367 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.049 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.82625 -38.81460 -37.62847 -36.49048 -36.16065 -34.13807 -34.06558 -32.12322 -30.46274 -28.87113 -25.60907 -25.07943 -22.93977 -21.63937 -21.33138 -20.07985 -18.90594 -18.15963 -17.99213 -17.37742 -17.13996 -16.46853 -15.61922 -15.52288 -15.48502 -14.91080 -14.35830 -13.96152 -13.69545 -13.67729 -13.55868 -13.47956 -12.86635 -12.79960 -12.64806 -12.51777 -12.44864 -12.05834 -11.77497 -11.74241 -11.47041 -11.37444 -10.99883 -10.87109 -10.65010 -9.95732 -9.43440 -9.13755 -8.73871 -8.07701 -7.90421 -7.59641 -7.02582 -6.76843 -4.45612 -0.36864 1.21462 2.06017 2.15544 2.39487 2.79206 2.98833 3.00615 3.05080 3.16334 3.30444 3.77469 3.77784 3.81209 4.06115 4.25549 4.59755 4.73803 4.83607 5.08954 5.39127 5.66427 5.80294 6.09889 6.36031 6.60386 6.76446 6.96541 7.04431 7.48910 7.56788 7.81545 7.90538 8.07417 8.43074 8.61259 8.71023 8.80452 9.74842 10.05036 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.020098 B = 0.002664 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.811691 B =10508.149700 C =11652.171096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.055 3.945 10 C -0.127 4.127 11 C -0.171 4.171 12 C -0.009 4.009 13 N -0.439 5.439 14 C 0.244 3.756 15 N -0.601 5.601 16 C 0.412 3.588 17 N -0.680 5.680 18 S -0.174 6.174 19 C -0.098 4.098 20 C -0.596 4.596 21 S 2.642 3.358 22 O -0.962 6.962 23 O -0.962 6.962 24 O -0.897 6.897 25 H 0.283 0.717 26 H 0.131 0.869 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.422 0.578 30 H 0.322 0.678 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.461 0.539 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.312 -9.756 8.088 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.048 3.952 10 C -0.153 4.153 11 C -0.193 4.193 12 C -0.167 4.167 13 N -0.152 5.152 14 C 0.008 3.992 15 N -0.236 5.236 16 C 0.019 3.981 17 N -0.317 5.317 18 S 0.050 5.950 19 C -0.248 4.248 20 C -0.725 4.725 21 S 2.733 3.267 22 O -0.961 6.961 23 O -0.961 6.961 24 O -0.767 6.767 25 H 0.094 0.906 26 H 0.149 0.851 27 H 0.116 0.884 28 H 0.138 0.862 29 H 0.261 0.739 30 H 0.142 0.858 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.331 0.669 Dipole moment (debyes) X Y Z Total from point charges 13.137 -9.968 8.174 18.406 hybrid contribution 0.175 1.021 -0.022 1.036 sum 13.312 -8.948 8.152 17.993 Atomic orbital electron populations 1.69779 1.07524 1.29559 1.34874 1.25856 0.94817 1.01281 0.92225 0.86299 0.80060 0.79999 0.80046 1.18747 1.20223 1.18881 1.19185 0.96374 0.90783 1.42740 0.90617 1.17924 0.94026 0.90914 0.92332 1.21463 0.97465 0.96998 0.99401 1.21637 1.00383 0.94484 1.02811 1.21639 0.95420 0.96355 1.03266 1.66910 1.07457 1.27941 1.12880 1.18303 0.90966 0.90439 0.99482 1.41324 1.25967 1.04751 1.51545 1.24117 0.90065 0.91133 0.92779 1.69669 1.32148 0.98551 1.31378 1.86080 1.35459 1.07116 1.66388 1.23110 0.99654 0.98470 1.03610 1.30018 1.06090 1.25987 1.10434 1.03737 0.72430 0.76914 0.73669 1.93671 1.57416 1.79147 1.65822 1.93670 1.82078 1.70069 1.50264 1.85422 1.66894 1.44378 1.79975 0.90552 0.85117 0.88375 0.86163 0.73884 0.85826 0.87304 0.87315 0.83188 0.83164 0.66949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.35 10.83 55.55 0.60 -18.75 16 2 C 0.08 1.79 5.23 -17.32 -0.09 1.70 16 3 Si 0.91 17.48 29.58 -169.99 -5.03 12.45 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.46 -11.21 8.54 -37.88 -0.32 -11.53 16 8 H 0.08 1.70 6.67 -52.49 -0.35 1.35 16 9 C 0.06 1.41 5.60 -106.48 -0.60 0.81 16 10 C -0.13 -3.18 8.79 -38.61 -0.34 -3.52 16 11 C -0.17 -3.97 10.08 -39.50 -0.40 -4.37 16 12 C -0.01 -0.22 11.17 -17.33 -0.19 -0.41 16 13 N -0.44 -10.98 7.67 -11.81 -0.09 -11.07 16 14 C 0.24 6.02 7.48 -154.77 -1.16 4.86 16 15 N -0.60 -12.74 5.42 -11.59 -0.06 -12.81 16 16 C 0.41 7.79 8.12 -87.84 -0.71 7.07 16 17 N -0.68 -13.51 11.35 30.79 0.35 -13.16 16 18 S -0.17 -2.38 22.23 -107.50 -2.39 -4.77 16 19 C -0.10 -1.01 4.32 37.16 0.16 -0.85 16 20 C -0.60 -3.91 6.17 37.16 0.23 -3.68 16 21 S 2.64 16.95 5.67 -107.50 -0.61 16.34 16 22 O -0.96 -9.65 18.09 -67.04 -1.21 -10.86 16 23 O -0.96 -9.59 18.09 -67.03 -1.21 -10.80 16 24 O -0.90 -3.34 13.27 -67.56 -0.90 -4.24 16 25 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 26 H 0.13 3.33 6.18 -52.49 -0.32 3.01 16 27 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 28 H 0.12 2.52 8.06 -52.49 -0.42 2.09 16 29 H 0.42 8.22 6.95 -40.82 -0.28 7.94 16 30 H 0.32 5.32 6.02 -40.82 -0.25 5.07 16 31 H 0.11 1.07 7.67 -51.92 -0.40 0.67 16 32 H 0.11 1.05 7.67 -51.91 -0.40 0.66 16 33 H 0.15 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.15 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.46 -0.32 9.03 67.38 0.61 0.28 16 LS Contribution 329.93 15.07 4.97 4.97 Total: -1.00 -36.15 329.93 -11.22 -47.37 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -2.22 Total: 15.24 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -3.42 Total: -9.91 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.80 Total: -55.78 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -3.32 Total: -25.90 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Atomic # 16 Polarization: 14.56 SS G_CDS: -3.00 Total: 11.56 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.15 -11.22 -47.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168090052.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.905 kcal (2) G-P(sol) polarization free energy of solvation -36.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds