Wall clock time and date at job start Tue Mar 31 2020 16:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86792 * 119.99940 * 2 1 4 4 H 1.48503 * 109.47191 * 240.00037 * 3 2 1 5 5 H 1.48505 * 109.47386 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47349 * 120.00234 * 3 2 1 7 7 C 1.39952 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99665 * 194.16841 * 7 2 1 9 9 C 1.41029 * 120.00105 * 14.17220 * 7 2 1 10 10 C 1.41033 * 120.70237 * 25.20939 * 9 7 2 11 11 C 1.37990 * 118.27213 * 180.25952 * 10 9 7 12 12 C 1.38703 * 119.61330 * 359.48857 * 11 10 9 13 13 N 1.31948 * 121.44388 * 0.27255 * 12 11 10 14 14 C 1.32226 * 121.87322 * 359.97438 * 13 12 11 15 15 N 1.38420 * 119.90117 * 179.97438 * 14 13 12 16 16 C 1.37858 * 119.99598 * 359.97438 * 15 14 13 17 17 N 1.30381 * 120.00488 * 0.02562 * 16 15 14 18 18 S 1.76199 * 119.99774 * 179.97438 * 16 15 14 19 19 C 1.81005 * 100.00154 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47482 * 180.02562 * 19 18 16 21 21 S 1.81397 * 109.47136 * 180.02562 * 20 19 18 22 22 O 1.42096 * 110.54537 * 291.62327 * 21 20 19 23 23 O 1.42098 * 110.54231 * 68.37897 * 21 20 19 24 24 O 1.52203 * 104.44641 * 180.02562 * 21 20 19 25 25 H 0.97004 * 120.00013 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.86727 * 0.02562 * 10 9 7 27 27 H 1.07995 * 120.19657 * 179.76385 * 11 10 9 28 28 H 1.07998 * 119.27781 * 180.25503 * 12 11 10 29 29 H 0.97004 * 120.00156 * 180.02562 * 15 14 13 30 30 H 0.97001 * 120.00459 * 179.97438 * 17 16 15 31 31 H 1.09001 * 109.47190 * 300.00760 * 19 18 16 32 32 H 1.09004 * 109.46512 * 60.00238 * 19 18 16 33 33 H 1.08995 * 109.46993 * 300.00404 * 20 19 18 34 34 H 1.08998 * 109.47053 * 59.99796 * 20 19 18 35 35 H 0.96704 * 113.99565 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2776 2.7465 0.0006 6 1 3.0964 1.6964 1.2125 7 6 2.0084 -1.2120 0.0005 8 1 3.0637 -1.2261 0.2295 9 6 1.3354 -2.4149 -0.2979 10 6 0.1656 -2.4092 -1.0857 11 6 -0.4555 -3.6144 -1.3423 12 6 0.0857 -4.7862 -0.8345 13 7 1.1838 -4.7767 -0.1030 14 6 1.8230 -3.6550 0.1825 15 7 2.9715 -3.6924 0.9541 16 6 3.4470 -4.8979 1.4243 17 7 2.8152 -6.0029 1.1417 18 16 4.9094 -4.9456 2.4061 19 6 5.0265 -6.7263 2.7092 20 6 6.2584 -7.0174 3.5686 21 16 6.3761 -8.8020 3.8717 22 8 5.3177 -9.2356 4.7148 23 8 6.6845 -9.4928 2.6688 24 8 7.6253 -8.9604 4.7268 25 1 -0.4850 0.8401 0.0004 26 1 -0.2359 -1.4853 -1.4748 27 1 -1.3552 -3.6457 -1.9388 28 1 -0.4025 -5.7269 -1.0421 29 1 3.4414 -2.8702 1.1647 30 1 3.1500 -6.8512 1.4722 31 1 4.1316 -7.0658 3.2306 32 1 5.1142 -7.2516 1.7581 33 1 7.1534 -6.6779 3.0475 34 1 6.1703 -6.4921 4.5196 35 1 7.8207 -9.8752 4.9719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168090052.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:16 Heat of formation + Delta-G solvation = -76.299169 kcal Electronic energy + Delta-G solvation = -22735.213161 eV Core-core repulsion = 18986.604437 eV Total energy + Delta-G solvation = -3748.608724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.049 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58581 -39.19981 -38.29476 -37.76270 -37.15033 -35.91119 -34.94934 -33.55081 -32.30326 -30.61999 -27.42843 -25.78719 -24.60566 -23.38060 -21.93025 -21.67126 -19.66894 -19.38686 -19.19197 -18.62965 -17.89766 -17.69729 -17.26053 -16.51501 -16.22410 -16.21710 -15.70508 -15.45067 -15.25039 -15.20855 -14.60552 -14.17287 -14.10131 -13.77134 -13.61532 -13.36309 -13.33538 -13.26572 -13.18882 -13.12980 -12.90465 -12.71043 -12.58718 -12.21230 -11.75841 -11.66871 -11.17338 -10.75358 -10.29877 -9.93959 -9.29839 -9.06769 -8.78529 -8.52500 -6.30095 -0.95011 0.10639 0.70228 0.94815 1.08039 1.42784 1.53215 1.57747 1.63727 1.70693 2.20981 2.51068 2.56054 2.81483 3.12026 3.26336 3.58111 3.80789 4.00039 4.21614 4.23530 4.44315 4.58187 4.59515 4.83229 4.98154 5.16383 5.24504 5.28064 5.70967 5.81327 6.01989 6.22737 6.29924 6.61916 6.79867 6.93281 7.35957 7.93834 8.31457 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.020098 B = 0.002664 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.811691 B =10508.149700 C =11652.171096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.481 4.481 8 H 0.087 0.913 9 C 0.027 3.973 10 C -0.152 4.152 11 C -0.172 4.172 12 C -0.023 4.023 13 N -0.456 5.456 14 C 0.235 3.765 15 N -0.608 5.608 16 C 0.393 3.607 17 N -0.713 5.713 18 S -0.132 6.132 19 C -0.112 4.112 20 C -0.594 4.594 21 S 2.685 3.315 22 O -0.999 6.999 23 O -0.998 6.998 24 O -0.887 6.887 25 H 0.290 0.710 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.144 0.856 29 H 0.426 0.574 30 H 0.337 0.663 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.479 0.521 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.396 -9.610 9.247 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.511 4.511 8 H 0.105 0.895 9 C 0.020 3.980 10 C -0.179 4.179 11 C -0.194 4.194 12 C -0.179 4.179 13 N -0.169 5.169 14 C -0.002 4.002 15 N -0.244 5.244 16 C 0.001 3.999 17 N -0.352 5.352 18 S 0.092 5.908 19 C -0.263 4.263 20 C -0.723 4.723 21 S 2.775 3.225 22 O -0.998 6.998 23 O -0.997 6.997 24 O -0.760 6.760 25 H 0.100 0.900 26 H 0.138 0.862 27 H 0.143 0.857 28 H 0.161 0.839 29 H 0.266 0.734 30 H 0.157 0.843 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.190 0.810 34 H 0.189 0.811 35 H 0.353 0.647 Dipole moment (debyes) X Y Z Total from point charges 15.238 -9.872 9.352 20.423 hybrid contribution -0.361 0.851 -0.276 0.965 sum 14.876 -9.020 9.076 19.623 Atomic orbital electron populations 1.69848 1.09050 1.30801 1.35209 1.26737 0.95502 1.04455 0.91206 0.85195 0.78658 0.75383 0.80229 1.18488 1.19700 1.17901 1.19493 0.97031 0.91197 1.43369 0.89515 1.18290 0.94702 0.92015 0.93011 1.21514 0.98418 0.97350 1.00581 1.21865 1.01044 0.93756 1.02699 1.22109 0.95386 0.97436 1.02995 1.67036 1.08090 1.28195 1.13574 1.18580 0.91902 0.90181 0.99528 1.41304 1.25401 1.05999 1.51684 1.24313 0.92162 0.90152 0.93285 1.69654 1.33941 0.99541 1.32069 1.85891 1.30830 1.09999 1.64031 1.23386 1.01830 0.96099 1.04955 1.30038 1.05177 1.26047 1.11056 1.02354 0.71654 0.76051 0.72419 1.93629 1.59421 1.79973 1.66730 1.93629 1.82733 1.71229 1.52105 1.85361 1.65350 1.46036 1.79263 0.89951 0.86204 0.85739 0.83882 0.73420 0.84299 0.86883 0.86757 0.81045 0.81115 0.64700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.84 10.83 21.83 0.24 -40.60 16 2 C 0.04 1.71 5.23 85.25 0.45 2.16 16 3 Si 0.98 35.38 29.58 68.60 2.03 37.41 16 4 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 6 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 7 C -0.48 -23.76 8.54 23.37 0.20 -23.56 16 8 H 0.09 3.93 6.67 -2.91 -0.02 3.91 16 9 C 0.03 1.41 5.60 -21.07 -0.12 1.30 16 10 C -0.15 -7.86 8.79 22.90 0.20 -7.66 16 11 C -0.17 -8.07 10.08 22.32 0.22 -7.84 16 12 C -0.02 -1.07 11.17 84.79 0.95 -0.12 16 13 N -0.46 -23.10 7.67 -191.28 -1.47 -24.57 16 14 C 0.23 11.84 7.48 133.94 1.00 12.84 16 15 N -0.61 -26.03 5.42 -190.59 -1.03 -27.07 16 16 C 0.39 14.72 8.12 179.38 1.46 16.17 16 17 N -0.71 -28.30 11.35 -56.51 -0.64 -28.94 16 18 S -0.13 -3.37 22.23 -56.49 -1.26 -4.63 16 19 C -0.11 -2.08 4.32 71.98 0.31 -1.76 16 20 C -0.59 -5.98 6.17 71.98 0.44 -5.53 16 21 S 2.68 28.78 5.67 -56.49 -0.32 28.46 16 22 O -1.00 -18.54 18.09 -118.57 -2.15 -20.68 16 23 O -1.00 -18.35 18.09 -118.57 -2.15 -20.50 16 24 O -0.89 -4.03 13.27 -118.07 -1.57 -5.60 16 25 H 0.29 13.05 8.30 -92.71 -0.77 12.28 16 26 H 0.12 6.34 6.18 -2.91 -0.02 6.33 16 27 H 0.12 4.99 8.06 -2.91 -0.02 4.96 16 28 H 0.14 5.92 8.06 -2.91 -0.02 5.90 16 29 H 0.43 16.73 6.95 -92.71 -0.64 16.08 16 30 H 0.34 10.99 6.02 -92.71 -0.56 10.43 16 31 H 0.11 2.04 7.67 -2.39 -0.02 2.02 16 32 H 0.11 2.02 7.67 -2.39 -0.02 2.01 16 33 H 0.17 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.17 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.48 -1.97 9.03 -87.93 -0.79 -2.76 16 Total: -1.00 -78.74 329.93 -4.00 -82.74 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: -0.81 Total: 37.97 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 5.11 Total: -14.01 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -2.91 Total: -121.17 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -5.86 Total: -46.78 kcal Atomic # 14 Polarization: 35.38 SS G_CDS: 2.03 Total: 37.41 kcal Atomic # 16 Polarization: 25.41 SS G_CDS: -1.58 Total: 23.84 kcal Total: -78.74 -4.00 -82.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168090052.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.444 kcal (2) G-P(sol) polarization free energy of solvation -78.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds