Wall clock time and date at job start Tue Mar 31 2020 16:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30530 * 1 3 3 Si 1.86799 * 120.00347 * 2 1 4 4 H 1.48503 * 109.47095 * 272.95720 * 3 2 1 5 5 H 1.48497 * 109.47040 * 32.95401 * 3 2 1 6 6 H 1.48497 * 109.47061 * 152.95763 * 3 2 1 7 7 C 1.40438 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99875 * 347.52301 * 7 2 1 9 9 C 1.40162 * 120.00379 * 167.52076 * 7 2 1 10 10 C 1.39429 * 120.04651 * 152.67868 * 9 7 2 11 11 C 1.41142 * 118.86107 * 179.72650 * 10 9 7 12 12 N 1.33884 * 120.54115 * 179.97438 * 11 10 9 13 13 C 1.34140 * 120.00212 * 185.44173 * 12 11 10 14 14 N 1.31433 * 120.00311 * 60.71683 * 13 12 11 15 15 S 1.76203 * 120.00125 * 240.71456 * 13 12 11 16 16 C 1.80999 * 100.00231 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47117 * 180.02562 * 16 15 13 18 18 S 1.81396 * 109.46937 * 179.97438 * 17 16 15 19 19 O 1.42095 * 110.54324 * 291.61876 * 18 17 16 20 20 O 1.42101 * 110.54510 * 68.37324 * 18 17 16 21 21 O 1.52208 * 104.44816 * 179.97438 * 18 17 16 22 22 C 1.41838 * 118.92217 * 359.97438 * 11 10 9 23 23 C 1.34775 * 120.00416 * 359.97438 * 22 11 10 24 24 N 1.36094 * 121.19083 * 0.02562 * 23 22 11 25 25 H 0.96996 * 119.44829 * 180.02562 * 24 23 22 26 26 H 0.97005 * 119.99969 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.57114 * 359.69887 * 10 9 7 28 28 H 0.96990 * 120.00007 * 180.02562 * 14 13 12 29 29 H 1.09009 * 109.46823 * 300.00065 * 16 15 13 30 30 H 1.08993 * 109.47152 * 59.99638 * 16 15 13 31 31 H 1.09000 * 109.46926 * 299.99850 * 17 16 15 32 32 H 1.08993 * 109.47676 * 59.99627 * 17 16 15 33 33 H 0.96701 * 113.99998 * 179.97438 * 21 18 17 34 34 H 1.08001 * 120.00002 * 180.02562 * 22 11 10 35 35 H 1.07998 * 119.40840 * 180.02562 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.4244 2.0825 -1.3982 5 1 1.4695 2.6338 0.7616 6 1 3.5668 1.4228 0.6365 7 6 2.0075 -1.2162 0.0005 8 1 1.4866 -2.1404 0.2030 9 6 3.3843 -1.2308 -0.2617 10 6 4.1846 -2.2439 0.2648 11 6 5.5670 -2.2375 -0.0200 12 7 6.3667 -3.1936 0.4686 13 6 7.6931 -3.1181 0.2833 14 7 8.3664 -2.0957 0.7616 15 16 8.5329 -4.3897 -0.6012 16 6 10.2275 -3.7585 -0.5261 17 6 11.1649 -4.7261 -1.2513 18 16 12.8631 -4.0930 -1.1766 19 8 12.9907 -2.9142 -1.9598 20 8 13.3565 -4.1448 0.1550 21 8 13.6887 -5.1313 -1.9229 22 6 6.0952 -1.2016 -0.8322 23 6 5.2803 -0.2447 -1.3188 24 7 3.9470 -0.2486 -1.0457 25 1 3.3837 0.4523 -1.4095 26 1 -0.4850 0.8401 -0.0004 27 1 3.7542 -3.0199 0.8804 28 1 9.3253 -2.0409 0.6272 29 1 10.2727 -2.7808 -1.0062 30 1 10.5350 -3.6662 0.5155 31 1 11.1197 -5.7038 -0.7716 32 1 10.8572 -4.8180 -2.2929 33 1 14.6326 -4.9258 -1.9669 34 1 7.1504 -1.1800 -1.0614 35 1 5.6927 0.5392 -1.9366 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168092913.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:58 Heat of formation + Delta-G solvation = -53.272018 kcal Electronic energy + Delta-G solvation = -22511.018477 eV Core-core repulsion = 18763.408285 eV Total energy + Delta-G solvation = -3747.610192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.049 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.57312 -38.74260 -37.54233 -36.44512 -36.39452 -34.29140 -33.85707 -32.37848 -31.33819 -29.19256 -26.54676 -24.86006 -23.18353 -22.05933 -21.30955 -19.97406 -18.82595 -18.55047 -17.91955 -17.69821 -17.04814 -16.93290 -16.01149 -15.54785 -15.40577 -15.35169 -14.91595 -14.25214 -13.86096 -13.69893 -13.56967 -13.51198 -13.29728 -12.73469 -12.71800 -12.56686 -12.42062 -12.33157 -11.81760 -11.68368 -11.58054 -11.49035 -11.27169 -10.77046 -10.62781 -10.52016 -10.09781 -9.97336 -8.70253 -8.51498 -8.13432 -7.64047 -7.55975 -6.55408 -5.22714 -0.24850 1.52522 1.97795 2.13677 2.25218 2.44368 2.63485 2.64242 2.68779 3.07455 3.14395 3.25704 3.66720 3.89135 3.99105 4.14610 4.40196 4.84696 4.93119 5.01417 5.14805 5.25242 5.47486 5.77024 6.00331 6.09471 6.15685 6.30349 6.61621 6.86468 7.19104 7.41721 7.57837 7.64342 7.68157 8.12463 8.19908 8.72964 9.33661 9.37394 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.034828 B = 0.002273 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.755735 B =12316.263617 C =12705.392848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.077 3.923 3 Si 0.879 3.121 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.237 1.237 7 C -0.427 4.427 8 H 0.123 0.877 9 C 0.298 3.702 10 C -0.310 4.310 11 C 0.327 3.673 12 N -0.633 5.633 13 C 0.435 3.565 14 N -0.772 5.772 15 S -0.200 6.200 16 C -0.105 4.105 17 C -0.590 4.590 18 S 2.637 3.363 19 O -0.966 6.966 20 O -0.965 6.965 21 O -0.897 6.897 22 C -0.247 4.247 23 C 0.117 3.883 24 N -0.617 5.617 25 H 0.395 0.605 26 H 0.298 0.702 27 H 0.131 0.869 28 H 0.310 0.690 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.459 0.541 34 H 0.128 0.872 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.995 -1.633 -7.150 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.148 4.148 3 Si 0.702 3.298 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.160 1.160 7 C -0.459 4.459 8 H 0.141 0.859 9 C 0.190 3.810 10 C -0.340 4.340 11 C 0.183 3.817 12 N -0.371 5.371 13 C 0.042 3.958 14 N -0.408 5.408 15 S 0.025 5.975 16 C -0.255 4.255 17 C -0.720 4.720 18 S 2.728 3.272 19 O -0.964 6.964 20 O -0.964 6.964 21 O -0.766 6.766 22 C -0.276 4.276 23 C -0.011 4.011 24 N -0.230 5.230 25 H 0.235 0.765 26 H 0.110 0.890 27 H 0.149 0.851 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.329 0.671 34 H 0.146 0.854 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 14.169 -2.375 -6.580 15.802 hybrid contribution 1.398 1.939 -0.355 2.417 sum 15.567 -0.436 -6.935 17.048 Atomic orbital electron populations 1.69445 1.07884 1.31533 1.29596 1.26312 0.95299 1.01588 0.91647 0.86811 0.82355 0.80573 0.80012 1.18598 1.19074 1.15992 1.19538 0.89670 0.97139 1.39589 0.85934 1.18055 0.92240 0.84586 0.86140 1.20410 0.90403 1.06669 1.16527 1.18718 0.92893 0.84542 0.85536 1.68686 0.98155 1.31626 1.38584 1.24877 0.95976 0.87141 0.87847 1.70710 1.12795 1.24540 1.32753 1.86540 1.00147 1.40355 1.70502 1.23055 0.97713 1.00809 1.03944 1.29996 1.19636 1.11102 1.11301 1.03870 0.77559 0.72360 0.73374 1.93654 1.85291 1.47864 1.69610 1.93657 1.77100 1.85326 1.40315 1.85438 1.34304 1.71607 1.85281 1.21437 0.99877 0.99184 1.07121 1.21411 0.83455 0.98826 0.97443 1.42536 1.07557 1.27550 1.45376 0.76535 0.89013 0.85088 0.87492 0.88196 0.88118 0.83377 0.83426 0.67147 0.85444 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.17 13.91 55.57 0.77 -15.40 16 2 C 0.08 1.58 5.49 -17.28 -0.09 1.49 16 3 Si 0.88 14.97 24.60 -169.99 -4.18 10.79 16 4 H -0.26 -3.90 6.86 56.52 0.39 -3.51 16 5 H -0.27 -4.50 7.11 56.52 0.40 -4.10 16 6 H -0.24 -4.31 6.80 56.52 0.38 -3.92 16 7 C -0.43 -9.27 9.62 -38.03 -0.37 -9.64 16 8 H 0.12 2.82 8.06 -52.49 -0.42 2.39 16 9 C 0.30 6.27 5.89 -84.06 -0.49 5.77 16 10 C -0.31 -7.02 9.81 -38.04 -0.37 -7.39 16 11 C 0.33 7.47 6.56 -84.49 -0.55 6.92 16 12 N -0.63 -15.16 10.51 -11.14 -0.12 -15.28 16 13 C 0.44 9.37 6.34 -90.41 -0.57 8.80 16 14 N -0.77 -16.22 12.82 30.25 0.39 -15.84 16 15 S -0.20 -3.49 22.27 -107.50 -2.39 -5.88 16 16 C -0.10 -1.34 4.32 37.16 0.16 -1.18 16 17 C -0.59 -5.14 6.17 37.16 0.23 -4.91 16 18 S 2.64 20.85 5.67 -107.50 -0.61 20.24 16 19 O -0.97 -10.83 18.09 -67.03 -1.21 -12.05 16 20 O -0.97 -10.97 18.09 -67.04 -1.21 -12.18 16 21 O -0.90 -4.47 13.27 -67.56 -0.90 -5.37 16 22 C -0.25 -4.92 8.92 -39.43 -0.35 -5.27 16 23 C 0.12 1.97 11.15 -16.89 -0.19 1.78 16 24 N -0.62 -11.23 3.69 -10.75 -0.04 -11.27 16 25 H 0.40 6.46 4.44 -40.82 -0.18 6.28 16 26 H 0.30 5.60 8.29 -40.82 -0.34 5.26 16 27 H 0.13 3.00 8.06 -52.49 -0.42 2.58 16 28 H 0.31 5.58 6.05 -40.82 -0.25 5.34 16 29 H 0.10 1.20 7.67 -51.91 -0.40 0.80 16 30 H 0.10 1.25 7.68 -51.92 -0.40 0.85 16 31 H 0.15 1.09 8.14 -51.92 -0.42 0.66 16 32 H 0.15 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.46 0.18 9.03 67.37 0.61 0.78 16 34 H 0.13 2.48 6.47 -52.49 -0.34 2.15 16 35 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -33.97 328.06 -9.40 -43.37 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -2.23 Total: 17.55 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.61 Total: -3.64 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 1.00 Total: -57.78 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -3.32 Total: -29.60 kcal Atomic # 14 Polarization: 14.97 SS G_CDS: -4.18 Total: 10.79 kcal Atomic # 16 Polarization: 17.36 SS G_CDS: -3.00 Total: 14.36 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.97 -9.40 -43.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168092913.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.901 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds